Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001969

Physical Location & Seq

Genomic Coordinates Reverse (-)

4426173 .. 4427547

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG066700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAAGCGTTTTGTTCTGTTTTTGTTCTTCTGGTGCAGCGCCTTTTTTGTATTGCTTGTAGTACAAGCAGACCCTTCAATTTCACCTATGCAGGAAAAAGAGCAACAAGCCCTTTACTCTACTATCCAAGGCTTTGTGGGGAAGTGGTGGAATGGTTCAGATCTCTATCCAGATCCTTGTGGCTGGACTCCGATACAAGGAGTTTATTGTGATCTCTACAATGGTTTCTGGTATGTTGCTGTTATAAACATTGGACCGCTTTATGACAACTATCTTCCTTGCACCCCAAATGCAGAATTTTCACATCACCTATTCAAGCTCAAGCACTTAAAGGTCCTCTCATTCTTCAATTGCTTCCTCTCACCAATTACAATTTCCCATTTAAACTGGGAAAGGCTTTCAAACAGTATAGAATCCTTGGAGTTTCGATCAAACCCAGGTCTCATTGGGAGAATTCCAAACACTTTTGGTTACCTTACAAAGCTGCAATCTCTAGTGCTGCTACAAAATGGGTTACAAGGCAAGTTGCCTAATCAAATAGGCAATCTAGTGAACTTGAGGCGGCTTGTCCTAGCAGGAAACAATCTTTCTGGTAAGATTCCAGTAAGTCTTGGAAGATTGACTAAGCTTTTAATTCTTGATGCAAGCAGAAACAAGCTATCTGGTTCATTACCTCTGACTTTTGGATCTTTGAGTTCACTTCTAAAGCTTGATTTAAGCGACAATATGATAGAGGGAAAGTTGCCTGTAGAGCTTGGAAGGCTAAAAAGTCTCACACTATTAGATCTTGGAAGTAACAAAATTTCAGGTGGCTTGGTCCAGTCACTTCAAGAAATGGTTTCTTTGAAAGAATTGGTGATATCCAACAATCCAATTGGGGGTGGCCTCGTCAGAATTCAGTGGCATAATCTACACAAGCTGGAAATTTTGGACCTTTCAAGCACATTTTTGACAGGGCACATTCCTAAGTCCTTGGCAGAAATGAAAAGGCTAAGGTTTTTGGGGCTTAACAATAACAATCTCTCAGGAAGAATATCTCCAATGCTGGAATCTCTGCCTTGCATTGGTGCTCTTTACCTCTATGGAAACAATTTCACAGGAGAAGCTAAATTCTCAGAAGGGTTCTATCGGAAAATGGGGAGGCGATTTGGAGCTTGGAACAACCCGAATCTATGTTACCGAGCTGAATCAAGTTCACCACAGTATGTTCCTCATGGGGTAAAACCATGCCAGCAAGAAACAACTATTTCCTCTGATAATTTTCCAAATTCCAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

426

Amino Acids

47.66

Weight (kDa)

9.28

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	157 - 369	1.9e-13	Leucine-rich repeat region
LRR_8	PF13855	213 - 268	2.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48940 AT3G18590
fragaria_vesca	FvH4_5g12850 FvH4_5g12860 FvH4_5g16790
malus_domestica	MD06G1209600.v1.1 MD14G1220300.v1.1 MD14G1231000.v1.1
prunus_persica	Prupe.3G188300_v2.0.a1 Prupe.3G262600_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G215500_v2.0.a1 Prupe.5G215600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179281 RchiOBHm_Chr7g0184371 RchiOBHm_Chr7g0184381
rosa_laevigata	RLG00000004980 RLG00000004981 RLG00000005366
rosa_multiflora	Rmu_sc0001557.1_g000021 Rmu_sc0008980.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269680
rosa_rugosa	Rorug06G0423200
rosa_samantha	Rh1BG431000 Rh1DG463500 Rh2AG269500 Rh2DG277300 Rh6AG308100 Rh7AG022400 Rh7AG080500 Rh7AG080600 Rh7BG022300 Rh7BG066600 Rh7BG066700 Rh7CG023600 Rh7CG066900 Rh7CG067000 Rh7DG022900 Rh7DG066600 Rh7DG066700
rosa_wichuraiana	Rw6G026630 Rw7G001840 Rw7G005470 Rw7G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AciI	CCGC	2 cut(s)	257, 562
AclWI	GGATC	2 cut(s)	167, 694
AcsI	RAATTY	7 cut(s)	296, 453, 801, 894, 924, 1109, 1267
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	3 cut(s)	197, 878, 1064
AgsI	TTSAA	7 cut(s)	78, 316, 349, 402, 830, 847, 939
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
Alw21I	GWGCWC	1 cut(s)	1072
Alw26I	GTCTC	2 cut(s)	446, 776
AlwI	GGATC	2 cut(s)	167, 694
AoxI	GGCC	1 cut(s)	883
ApeKI	GCWGC	3 cut(s)	36, 484, 499
ApoI	RAATTY	7 cut(s)	296, 453, 801, 894, 924, 1109, 1267
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	254, 334, 817, 931
AsuHPI	GGTGA	5 cut(s)	75, 299, 354, 868, 1188
AvaII	GGWCC	4 cut(s)	254, 334, 817, 931
BaeGI	GKGCMC	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	1072
BbvI	GCAGC	3 cut(s)	48, 471, 486
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	446, 776
BfaI	CTAG	3 cut(s)	494, 548, 572
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	42
BglII	AGATCT	2 cut(s)	160, 784
BisI	GCNGC	4 cut(s)	37, 485, 500, 563
BlsI	GCNGC	4 cut(s)	38, 486, 501, 564
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	4 cut(s)	254, 334, 817, 931
BmgT120I	GGNCC	4 cut(s)	254, 334, 817, 931
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	631
BmuI	ACTGGG	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	992
BpuEI	CTTGAG	2 cut(s)	305, 577
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	4 cut(s)	127, 417, 436, 972
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 878, 1064
Bse1I	ACTGG	3 cut(s)	392, 602, 820
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	127, 417, 436, 972
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	197, 878, 1064
BseMII	CTCAG	2 cut(s)	1038, 1128
BseNI	ACTGG	3 cut(s)	392, 602, 820
BseSI	GKGCMC	1 cut(s)	960
BseXI	GCAGC	3 cut(s)	48, 471, 486
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	885
BsiHKAI	GWGCWC	1 cut(s)	1072
BslI	CCNNNNNNNGG	3 cut(s)	197, 878, 1064
BsmAI	GTCTC	2 cut(s)	446, 776
BsnI	GGCC	1 cut(s)	885
Bso31I	GGTCTC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	960, 1072
Bsp143I	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
BspACI	CCGC	2 cut(s)	257, 562
BspANI	GGCC	1 cut(s)	885
BspCNI	CTCAG	2 cut(s)	1037, 1127
BspPI	GGATC	2 cut(s)	167, 694
BspTNI	GGTCTC	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	392, 602, 820
BssECI	CCNNGG	4 cut(s)	127, 417, 436, 972
BssMI	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
BssT1I	CCWWGG	3 cut(s)	127, 417, 972
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	407, 1203
BstC8I	GCNNGC	2 cut(s)	646, 1232
BstDEI	CTNAG	5 cut(s)	624, 966, 992, 1024, 1114
BstEII	GGTNACC	1 cut(s)	470
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	6 cut(s)	163, 175, 214, 431, 689, 787
BstMAI	GTCTC	2 cut(s)	446, 776
BstMBI	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	751, 760
BstNI	CCWGG	1 cut(s)	438
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	960
BstV1I	GCAGC	3 cut(s)	48, 471, 486
BstX2I	RGATCY	4 cut(s)	160, 172, 686, 784
BstYI	RGATCY	4 cut(s)	160, 172, 686, 784
BsuRI	GGCC	1 cut(s)	885
BtsIMutI	CAGTG	1 cut(s)	905
Cac8I	GCNNGC	2 cut(s)	646, 1232
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	4 cut(s)	254, 334, 817, 931
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	2 cut(s)	1214, 1227
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	5 cut(s)	624, 966, 992, 1024, 1114
DpnI	GATC	6 cut(s)	162, 174, 213, 430, 688, 786
DpnII	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
DraI	TTTAAA	1 cut(s)	384
Eco130I	CCWWGG	3 cut(s)	127, 417, 972
Eco31I	GGTCTC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	861
Eco47I	GGWCC	4 cut(s)	254, 334, 817, 931
Eco91I	GGTNACC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	470
EcoRI	GAATTC	2 cut(s)	453, 894
EcoRII	CCWGG	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	861
EcoT14I	CCWWGG	3 cut(s)	127, 417, 972
ErhI	CCWWGG	3 cut(s)	127, 417, 972
FaeI	CATG	2 cut(s)	1217, 1230
FatI	CATG	2 cut(s)	1213, 1226
Fnu4HI	GCNGC	4 cut(s)	37, 485, 500, 563
Fsp4HI	GCNGC	4 cut(s)	37, 485, 500, 563
FspBI	CTAG	3 cut(s)	494, 548, 572
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	37, 485, 500, 563
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	885
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	1217, 1230
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	2 cut(s)	626, 707
HinfI	GANTC	6 cut(s)	187, 413, 598, 1049, 1168, 1187
HphI	GGTGA	5 cut(s)	75, 299, 354, 868, 1188
Hpy166II	GTNNAC	3 cut(s)	553, 698, 1196
Hpy188I	TCNGA	7 cut(s)	160, 192, 678, 893, 1117, 1131, 1255
Hpy188III	TCNNGA	4 cut(s)	170, 638, 830, 1026
Hpy8I	GTNNAC	3 cut(s)	553, 698, 1196
HpyAV	CCTTC	3 cut(s)	84, 753, 1112
HpyCH4III	ACNGT	2 cut(s)	407, 1203
HpyCH4V	TGCA	7 cut(s)	36, 91, 282, 293, 487, 644, 1062
HpyF10VI	GCNNNNNNNGC	2 cut(s)	751, 760
HpyF3I	CTNAG	5 cut(s)	624, 966, 992, 1024, 1114
Hsp92II	CATG	2 cut(s)	1217, 1230
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
LmnI	GCTCC	1 cut(s)	1151
Lsp1109I	GCAGC	3 cut(s)	48, 471, 486
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	3 cut(s)	494, 548, 572
MaeIII	GTNAC	5 cut(s)	470, 513, 794, 822, 1175
MalI	GATC	6 cut(s)	162, 174, 213, 430, 688, 786
MboI	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
MboII	GAAGA	5 cut(s)	19, 266, 337, 627, 1041
MfeI	CAATTG	2 cut(s)	349, 873
MflI	RGATCY	4 cut(s)	160, 172, 686, 784
MhlI	GDGCHC	2 cut(s)	960, 1072
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	888
MseI	TTAA	5 cut(s)	329, 383, 632, 716, 1008
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	2 cut(s)	349, 873
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	751, 760
NdeII	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
NlaIII	CATG	2 cut(s)	1217, 1230
NmuCI	GTSAC	1 cut(s)	822
PfeI	GAWTC	5 cut(s)	413, 598, 1049, 1168, 1187
PkrI	GCNGC	4 cut(s)	38, 486, 501, 564
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	4 cut(s)	254, 334, 817, 931
PspPPI	RGGWCCY	1 cut(s)	334
PsuI	RGATCY	4 cut(s)	160, 172, 686, 784
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	329, 383, 632, 716, 1008
SatI	GCNGC	4 cut(s)	37, 485, 500, 563
Sau3AI	GATC	6 cut(s)	160, 172, 211, 428, 686, 784
Sau96I	GGNCC	4 cut(s)	254, 334, 817, 931
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	2 cut(s)	960, 1072
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	4 cut(s)	254, 334, 817, 931
SmlI	CTYRAG	2 cut(s)	320, 556
SmoI	CTYRAG	2 cut(s)	320, 556
SsiI	CCGC	2 cut(s)	257, 562
SspMI	CTAG	3 cut(s)	494, 548, 572
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	3 cut(s)	127, 417, 972
TaaI	ACNGT	2 cut(s)	407, 1203
TaqI	TCGA	1 cut(s)	427
TatI	WGTACW	1 cut(s)	61
TauI	GCSGC	1 cut(s)	565
TfiI	GAWTC	5 cut(s)	413, 598, 1049, 1168, 1187
Tru1I	TTAA	5 cut(s)	329, 383, 632, 716, 1008
Tru9I	TTAA	5 cut(s)	329, 383, 632, 716, 1008
TscAI	CASTG	1 cut(s)	905
TseFI	GTSAC	1 cut(s)	822
TseI	GCWGC	3 cut(s)	36, 484, 499
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	3 cut(s)	17, 657, 998
TspRI	CASTG	1 cut(s)	905
VpaK11BI	GGWCC	4 cut(s)	254, 334, 817, 931
XapI	RAATTY	7 cut(s)	296, 453, 801, 894, 924, 1109, 1267
XspI	CTAG	3 cut(s)	494, 548, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.