Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Reverse (-)

18777601 .. 18778614

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGACTTGATGACGAACCAGAAAACGCCCTAGTGGTTTCGTCTTCACCAAAGACGGTTGTGGCTTCTGGCAATGTCAAGTACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGTGCCCAGATTTACGCAGACCACAAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAAGCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCACCGGAACTTCCCTTGGTCTACAATCACTCTCAACGAACCAGACTTTCAAAATTGCTACACAACAGAGACTGTGTTGAACATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTTTCTCAGAATCAGATCTCAGATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAGCCCGAGGAGAAGTGAATCAAGAATCAGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGAATTGACACCGAGCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGTGAAGTATATGCCTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGAGGGTGAAATAGTAGGATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGTGAAGGAGAAGAATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAACAATGTGAAGACATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTTTTCAGACAACGGTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAGTGCAAGTAAAGAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATCAGAGGAGAACAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAATGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

337

Amino Acids

38.47

Weight (kDa)

6.62

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	27 - 73	4.7e-06	AP2 domain
B3	PF02362	157 - 256	3.2e-22	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	705
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	2 cut(s)	171, 183
AclWI	GGATC	2 cut(s)	607, 1007
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	2 cut(s)	83, 338
AfeI	AGCGCT	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	705
AgsI	TTSAA	3 cut(s)	166, 287, 316
AluBI	AGCT	5 cut(s)	222, 466, 687, 863, 930
AluI	AGCT	5 cut(s)	222, 466, 687, 863, 930
Alw26I	GTCTC	3 cut(s)	299, 321, 637
AlwI	GGATC	2 cut(s)	607, 1007
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	417
Aor51HI	AGCGCT	1 cut(s)	562
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	3 cut(s)	39, 599, 688
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	119
BbsI	GAAGAC	3 cut(s)	36, 685, 794
BbvCI	CCTCAGC	1 cut(s)	864
BccI	CCATC	1 cut(s)	699
BceAI	ACGGC	1 cut(s)	204
BclI	TGATCA	2 cut(s)	321, 565
BcoDI	GTCTC	3 cut(s)	299, 321, 637
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	564
BglI	GCCNNNNNGGC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	3 cut(s)	121, 405, 853
BmsI	GCATC	1 cut(s)	212
BpiI	GAAGAC	3 cut(s)	36, 685, 794
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
Bpu10I	CCTNAGC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	719
Bsa29I	ATCGAT	1 cut(s)	825
BsaJI	CCNNGG	4 cut(s)	186, 251, 418, 855
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	3 cut(s)	79, 645, 832
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	4 cut(s)	186, 251, 418, 855
BseGI	GGATG	2 cut(s)	710, 751
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseMI	GCAATG	3 cut(s)	79, 645, 832
BseMII	CTCAG	3 cut(s)	376, 389, 855
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	435, 977
BseSI	GKGCMC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	825
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	2 cut(s)	417, 758
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	3 cut(s)	299, 321, 637
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	417, 758
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
BspACI	CCGC	2 cut(s)	171, 183
BspCNI	CTCAG	3 cut(s)	375, 388, 856
BspDI	ATCGAT	1 cut(s)	825
BspHI	TCATGA	1 cut(s)	886
BspLI	GGNNCC	3 cut(s)	121, 405, 853
BspPI	GGATC	2 cut(s)	607, 1007
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	3 cut(s)	79, 645, 832
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	4 cut(s)	186, 251, 418, 855
BssMI	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
BssT1I	CCWWGG	1 cut(s)	251
Bst4CI	ACNGT	7 cut(s)	58, 110, 310, 332, 851, 883, 893
Bst6I	CTCTTC	1 cut(s)	576
BstDEI	CTNAG	4 cut(s)	362, 375, 864, 1011
BstDSI	CCRYGG	2 cut(s)	186, 855
BstF5I	GGATG	2 cut(s)	710, 751
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	6 cut(s)	324, 374, 568, 602, 825, 1002
BstMAI	GTCTC	3 cut(s)	299, 321, 637
BstMBI	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstSLI	GKGCMC	1 cut(s)	124
BstV2I	GAAGAC	3 cut(s)	36, 685, 794
BstX2I	RGATCY	2 cut(s)	371, 599
BstYI	RGATCY	2 cut(s)	371, 599
Bsu15I	ATCGAT	1 cut(s)	825
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	2 cut(s)	186, 855
BtgZI	GCGATG	2 cut(s)	507, 783
BtsCI	GGATG	2 cut(s)	710, 751
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	543, 903
CaiI	CAGNNNCTG	1 cut(s)	308
CciI	TCATGA	1 cut(s)	886
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	404
ClaI	ATCGAT	1 cut(s)	825
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	82, 337
CviAII	CATG	3 cut(s)	319, 887, 934
CviQI	GTAC	2 cut(s)	82, 337
DdeI	CTNAG	4 cut(s)	362, 375, 864, 1011
DpnI	GATC	6 cut(s)	323, 373, 567, 601, 824, 1001
DpnII	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	404
Eco47III	AGCGCT	1 cut(s)	562
Eco88I	CYCGRG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	3 cut(s)	322, 890, 937
FaiI	YATR	9 cut(s)	320, 534, 546, 548, 557, 878, 888, 935, 983
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	2 cut(s)	417, 758
FatI	CATG	3 cut(s)	318, 886, 933
FbaI	TGATCA	2 cut(s)	321, 565
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	717, 758
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	564
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	3 cut(s)	322, 890, 937
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	5 cut(s)	90, 366, 430, 437, 730
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	3 cut(s)	39, 599, 688
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188III	TCNNGA	5 cut(s)	434, 718, 775, 817, 887
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	5 cut(s)	469, 715, 736, 766, 791
HpyCH4III	ACNGT	7 cut(s)	58, 110, 310, 332, 851, 883, 893
HpyCH4V	TGCA	4 cut(s)	203, 459, 536, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	4 cut(s)	362, 375, 864, 1011
Hsp92II	CATG	3 cut(s)	322, 890, 937
HspAI	GCGC	1 cut(s)	561
Ksp22I	TGATCA	2 cut(s)	321, 565
Kzo9I	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
LmnI	GCTCC	1 cut(s)	935
LpnPI	CCDG	8 cut(s)	33, 54, 137, 254, 291, 655, 695, 712
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	6 cut(s)	323, 373, 567, 601, 824, 1001
MboI	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
MboII	GAAGA	7 cut(s)	36, 593, 620, 685, 739, 799, 953
MflI	RGATCY	2 cut(s)	371, 599
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	3 cut(s)	289, 347, 479
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	7 cut(s)	413, 577, 610, 695, 859, 955, 968
MroXI	GAANNNNTTC	1 cut(s)	713
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NdeII	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
NlaIII	CATG	3 cut(s)	322, 890, 937
NlaIV	GGNNCC	3 cut(s)	121, 405, 853
PagI	TCATGA	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	4 cut(s)	366, 430, 437, 730
PflMI	CCANNNNNTGG	1 cut(s)	705
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	121, 405, 853
PspPI	GGNCC	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	371, 599
RsaI	GTAC	2 cut(s)	83, 338
RsaNI	GTAC	2 cut(s)	82, 337
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	6 cut(s)	321, 371, 565, 599, 822, 999
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	9 cut(s)	224, 468, 526, 621, 662, 689, 802, 865, 932
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	3 cut(s)	289, 347, 479
SsiI	CCGC	2 cut(s)	171, 183
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	7 cut(s)	58, 110, 310, 332, 851, 883, 893
TaqI	TCGA	2 cut(s)	825, 1002
TasI	AATT	3 cut(s)	289, 347, 479
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	4 cut(s)	366, 430, 437, 730
TscAI	CASTG	2 cut(s)	543, 903
TspDTI	ATGAA	4 cut(s)	192, 544, 821, 875
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	2 cut(s)	543, 903
Van91I	CCANNNNNTGG	1 cut(s)	705
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.