Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01079

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

3277 .. 4329

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAAGATGAAGCATCAACCATGATTAATTCAAGTGCCCTTAAAAATAATAACAGCGTTGCTGTGCCGGGAGAAACGTCGGGTTCAAACGACACCAATTTTGAACTTCGCCCAACTAAGCGTTTGAGGCATGACAATGATGTCTCACTTGCAAAATTCAAAGGAGTGGTGCCACAACAAAATGGTCATTGGGGTGCACAGATATACGCAAACCACCAAAGAATTTGGCTTGGCACGTTCAAATCAGAGAACGAAGCGGCCATGGCTTACGATAGTGCTGCAATCAAGCTTCGAAAAGGTAACGAGTCCCATAGAAATTTCCCGTGGACCAACCTGACCATTCAAGAGCCTGATTTCCAAAACCATCTCACCACAGAAGAAGTAATTAAAATGATTAGGGACGGTTCCTATCCATCCAAATTTGGTGCCTTCGTTAGGTCACAAACACAGTCTCAGAGTGAGGAAGTTGGAAAGGTACTGTGTAGGCAACTATTTCAAAAGGAATTGACACCAAGCGATGTGGGTAAGCTTAATAGGCTTGTGATACCGAAGAAATATGCTGTTAAGTATTTTCCTTGTATTTGTGAGACTGTGGAAGAAAATGGGGTTGACGATGTTGAGCTAGTTTTCTATGACAAGGTCATGAGGGCATGGAAATTTAGGTATTGCTATTGGAAGAGTAGTCAAAGTTTTGTCTTCACAAGGGGTTGGAATCGGTTTGTGAAGGAAAACAGCTTAAAGGCAAATGATGTGATCACATTCTATACATGTGAGAGTGCTGAGTTAATAAGAGATGAAAGTGGAGAAGTTACTACTACATTTTCCTTAATTGATGGGAAACTGGAACTAAATCTGAGCGGAAATAGCAGCTACAAATTGCAAGAAGTTGAATGTAAACATGGTGAAGAAAATAAGGCATCCATGGTGGAGGAAAAAGGAGTTAGGCTCTTTGGTGTGAATATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

322

Amino Acids

36.74

Weight (kDa)

6.36

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	52 - 99	1.5e-06	AP2 domain
B3	PF02362	165 - 258	2.4e-23	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	169, 425
AccBSI	CCGCTC	1 cut(s)	858
AciI	CCGC	2 cut(s)	257, 858
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	5 cut(s)	155, 222, 316, 419, 656
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflIII	ACRYGT	1 cut(s)	767
AgsI	TTSAA	8 cut(s)	33, 87, 104, 160, 241, 344, 497, 890
AluBI	AGCT	5 cut(s)	289, 529, 622, 735, 870
AluI	AGCT	5 cut(s)	289, 529, 622, 735, 870
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	148, 456, 581
Alw44I	GTGCAC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	258
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	278, 867
ApoI	RAATTY	5 cut(s)	155, 222, 316, 419, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AseI	ATTAAT	2 cut(s)	27, 963
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	361, 914
AsuII	TTCGAA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	2 cut(s)	40, 199
BanI	GGYRCC	2 cut(s)	169, 425
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	265, 879
BccI	CCATC	3 cut(s)	372, 421, 827
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BclI	TGATCA	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	3 cut(s)	148, 456, 581
BfaI	CTAG	1 cut(s)	623
BisI	GCNGC	3 cut(s)	258, 279, 868
BlsI	GCNGC	3 cut(s)	259, 280, 869
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	3 cut(s)	171, 406, 427
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	23, 926
BpiI	GAAGAC	1 cut(s)	688
BplI	GAGNNNNNCTC	2 cut(s)	930, 962
Bpu14I	TTCGAA	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	261, 323, 921
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	846
BseDI	CCNNGG	3 cut(s)	261, 323, 921
BseGI	GGATG	2 cut(s)	413, 917
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	467, 771, 845
BseNI	ACTGG	1 cut(s)	846
BseSI	GKGCMC	2 cut(s)	40, 199
BseXI	GCAGC	2 cut(s)	265, 879
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	2 cut(s)	169, 425
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	292, 413
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	3 cut(s)	148, 456, 581
BsmFI	GGGAC	2 cut(s)	292, 413
BsnI	GGCC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	40, 199
Bsp143I	GATC	1 cut(s)	753
Bsp19I	CCATGG	2 cut(s)	261, 921
BspACI	CCGC	2 cut(s)	257, 858
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	3 cut(s)	466, 772, 846
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	3 cut(s)	171, 406, 427
BspT104I	TTCGAA	1 cut(s)	292
BspT107I	GGYRCC	2 cut(s)	169, 425
BsrBI	CCGCTC	1 cut(s)	858
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	3 cut(s)	261, 323, 921
BssMI	GATC	1 cut(s)	753
BssT1I	CCWWGG	2 cut(s)	261, 921
Bst4CI	ACNGT	4 cut(s)	404, 450, 480, 592
Bst6I	CTCTTC	1 cut(s)	671
BstBI	TTCGAA	1 cut(s)	292
BstDEI	CTNAG	4 cut(s)	117, 453, 780, 854
BstDSI	CCRYGG	3 cut(s)	261, 323, 921
BstENI	CCTNNNNNAGG	1 cut(s)	433
BstF5I	GGATG	2 cut(s)	413, 917
BstKTI	GATC	1 cut(s)	756
BstMAI	GTCTC	3 cut(s)	148, 456, 581
BstMBI	GATC	1 cut(s)	753
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 263, 535, 864
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	1 cut(s)	67
BstSLI	GKGCMC	2 cut(s)	40, 199
BstV1I	GCAGC	2 cut(s)	265, 879
BstV2I	GAAGAC	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	260
BtgI	CCRYGG	3 cut(s)	261, 323, 921
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	413, 917
CciI	TCATGA	1 cut(s)	642
Cfr13I	GGNCC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	476
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	8 cut(s)	22, 131, 262, 643, 651, 768, 899, 922
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	4 cut(s)	117, 453, 780, 854
DpnI	GATC	1 cut(s)	755
DpnII	GATC	1 cut(s)	753
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
Eco130I	CCWWGG	2 cut(s)	261, 921
Eco47I	GGWCC	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	261, 921
ErhI	CCWWGG	2 cut(s)	261, 921
FaeI	CATG	8 cut(s)	25, 134, 265, 646, 654, 771, 902, 925
FaqI	GGGAC	2 cut(s)	292, 413
FatI	CATG	8 cut(s)	21, 130, 261, 642, 650, 767, 898, 921
FbaI	TGATCA	1 cut(s)	753
Fnu4HI	GCNGC	3 cut(s)	258, 279, 868
FokI	GGATG	2 cut(s)	400, 904
Fsp4HI	GCNGC	3 cut(s)	258, 279, 868
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	3 cut(s)	258, 279, 868
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	8 cut(s)	25, 134, 265, 646, 654, 771, 902, 925
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	2 cut(s)	287, 527
HinfI	GANTC	2 cut(s)	305, 712
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	361, 914
Hpy166II	GTNNAC	4 cut(s)	197, 327, 610, 896
Hpy188I	TCNGA	3 cut(s)	247, 456, 855
Hpy188III	TCNNGA	2 cut(s)	344, 643
Hpy8I	GTNNAC	4 cut(s)	197, 327, 610, 896
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	439, 718
HpyCH4III	ACNGT	4 cut(s)	404, 450, 480, 592
HpyCH4IV	ACGT	2 cut(s)	77, 236
HpyCH4V	TGCA	4 cut(s)	152, 197, 281, 880
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 263, 535, 864
HpyF3I	CTNAG	4 cut(s)	117, 453, 780, 854
HpySE526I	ACGT	2 cut(s)	77, 236
Hsp92II	CATG	8 cut(s)	25, 134, 265, 646, 654, 771, 902, 925
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	1 cut(s)	753
LpnPI	CCDG	4 cut(s)	81, 347, 363, 827
Lsp1109I	GCAGC	2 cut(s)	265, 879
LweI	GCATC	2 cut(s)	23, 926
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	2 cut(s)	77, 236
MaeIII	GTNAC	3 cut(s)	299, 438, 808
MalI	GATC	1 cut(s)	755
MbiI	CCGCTC	1 cut(s)	858
MboI	GATC	1 cut(s)	753
MboII	GAAGA	7 cut(s)	17, 389, 562, 608, 688, 688, 917
MhlI	GDGCHC	2 cut(s)	40, 199
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	448, 689
MnlI	CCTC	4 cut(s)	120, 454, 639, 922
MslI	CAYNNNNRTG	2 cut(s)	135, 192
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	4 cut(s)	127, 263, 535, 864
NciI	CCSGG	1 cut(s)	69
NcoI	CCATGG	2 cut(s)	261, 921
NdeII	GATC	1 cut(s)	753
NlaIII	CATG	8 cut(s)	25, 134, 265, 646, 654, 771, 902, 925
NlaIV	GGNNCC	3 cut(s)	171, 406, 427
NmuCI	GTSAC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	771
NspV	TTCGAA	1 cut(s)	292
PacI	TTAATTAA	1 cut(s)	967
PagI	TCATGA	1 cut(s)	642
PciI	ACATGT	1 cut(s)	767
PfeI	GAWTC	1 cut(s)	712
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	259, 280, 869
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PscI	ACATGT	1 cut(s)	767
PshBI	ATTAAT	2 cut(s)	27, 963
PspN4I	GGNNCC	3 cut(s)	171, 406, 427
PspPI	GGNCC	1 cut(s)	327
PsyI	GACNNNGTC	1 cut(s)	638
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	2 cut(s)	135, 192
SatI	GCNGC	3 cut(s)	258, 279, 868
Sau3AI	GATC	1 cut(s)	753
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	40, 199
SfaNI	GCATC	2 cut(s)	23, 926
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	2 cut(s)	135, 192
SsiI	CCGC	2 cut(s)	257, 858
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	261, 921
TaaI	ACNGT	4 cut(s)	404, 450, 480, 592
TaiI	ACGT	2 cut(s)	80, 239
TaqI	TCGA	1 cut(s)	292
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	2 cut(s)	278, 867
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	2 cut(s)	24, 810
Tth111I	GACNNNGTC	1 cut(s)	638
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	327
VspI	ATTAAT	2 cut(s)	27, 963
XagI	CCTNNNNNAGG	1 cut(s)	433
XapI	RAATTY	5 cut(s)	155, 222, 316, 419, 656
XceI	RCATGY	1 cut(s)	771
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.