RLG00000001316

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002213
Physical Location & Seq
Reverse (-)
13982184 .. 13982997
814 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001316

Sequence Viewer

Length: 573 bp
ATGTCTACCAATACCAAATTGAAAGGAGTTGTGCTGCAACAAATTGGCCACTGGGGTGCTCAGATCTATGCCAATCACAATAGGGTTTGGCTTGGAACATTCAATTTCGAGGTGGATGCATCCATGTCTTATGATAGTGCTACAATCAAGCTTCGCAACGGAGAGTGCCAAAGGAACTTTTCATGGACCAAGATCACTGATCAAGAGCCATACTTTCAGAATCTCTATAGCCAAGAAGCCGTTCTCAACATGATCAAGGACGGTCTTACCAGGCTAGATTTTTTAGAATTTCTCATGGCTCGCCAGGCAGCAGAAATTGAAAACATGAGGCCATGGAAGTTCAGGTACTGTTACTGGAAGAGCAGCCAAAGCTTTGTGTTCACCCGGTGTTGGAATCGGTTTGTAAAGGAGAGCCTATTGAATGCCAATGACACTATCAGATTCTATGAGTGCTACATTAGGGAAGGAGATAAGGAGGCCAAGTCATTCTACAAGATTAAAATCGACAGGGCTGAAAGTTCTGATGTCATTGTTGTAAATCCTAGCCAATGTGATCCCCCCGCCCTCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2 B3

Protein Analysis

191

Amino Acids

22.37

Weight (kDa)

8.23

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 107 - 155 2.3e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 561
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 4 cut(s) 22, 103, 320, 421
AjnI CCWGG 2 cut(s) 269, 303
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 2 cut(s) 151, 372
AluI AGCT 2 cut(s) 151, 372
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 1 cut(s) 548
AlwNI CAGNNNCTG 1 cut(s) 348
AoxI GGCC 3 cut(s) 46, 329, 477
ApeKI GCWGC 3 cut(s) 34, 308, 363
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 373, 559
AvaII GGWCC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 48
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 3 cut(s) 21, 320, 375
BceAI ACGGC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 2 cut(s) 271, 305
BclI TGATCA 2 cut(s) 199, 252
BcnI CCSGG 1 cut(s) 385
BfaI CTAG 3 cut(s) 275, 543, 571
BfmI CTRYAG 1 cut(s) 226
BglII AGATCT 1 cut(s) 63
BisI GCNGC 3 cut(s) 35, 309, 364
BlsI GCNGC 3 cut(s) 36, 310, 365
Bme1390I CCNGG 3 cut(s) 271, 305, 385
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 271, 305, 385
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 2 cut(s) 106, 128
BmuI ACTGGG 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 332
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 56, 359
Bse8I GATNNNNATC 1 cut(s) 500
BseBI CCWGG 2 cut(s) 271, 305
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 2 cut(s) 119, 121
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 56, 359
BseXI GCAGC 3 cut(s) 21, 320, 375
BshFI GGCC 3 cut(s) 48, 331, 479
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 390
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 3 cut(s) 48, 331, 479
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 5 cut(s) 63, 192, 199, 252, 553
Bsp19I CCATGG 1 cut(s) 332
BspACI CCGC 1 cut(s) 561
BspANI GGCC 3 cut(s) 48, 331, 479
BspCNI CTCAG 1 cut(s) 73
BspPI GGATC 1 cut(s) 548
BspQI GCTCTTC 1 cut(s) 353
BsrI ACTGG 2 cut(s) 56, 359
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 5 cut(s) 63, 192, 199, 252, 553
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 271, 305
Bst4CI ACNGT 2 cut(s) 263, 350
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 119, 121
BstKTI GATC 5 cut(s) 66, 195, 202, 255, 556
BstMBI GATC 5 cut(s) 63, 192, 199, 252, 553
BstMWI GCNNNNNNNGC 2 cut(s) 305, 369
BstNI CCWGG 2 cut(s) 271, 305
BstSCI CCNGG 3 cut(s) 269, 303, 383
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 21, 320, 375
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 3 cut(s) 48, 331, 479
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 2 cut(s) 119, 121
BtsIMutI CAGTG 2 cut(s) 49, 195
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 346
CviAII CATG 6 cut(s) 124, 183, 250, 295, 325, 333
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 60
DpnI GATC 5 cut(s) 65, 194, 201, 254, 555
DpnII GATC 5 cut(s) 63, 192, 199, 252, 553
DraIII CACNNNGTG 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 269, 303
EcoT14I CCWWGG 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 6 cut(s) 127, 186, 253, 298, 328, 336
FatI CATG 6 cut(s) 123, 182, 249, 294, 324, 332
FauI CCCGC 1 cut(s) 568
FbaI TGATCA 2 cut(s) 199, 252
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 35, 309, 364
FokI GGATG 2 cut(s) 106, 128
Fsp4HI GCNGC 3 cut(s) 35, 309, 364
FspBI CTAG 3 cut(s) 275, 543, 571
GluI GCNGC 3 cut(s) 35, 309, 364
HaeIII GGCC 3 cut(s) 48, 331, 479
HapII CCGG 1 cut(s) 385
Hin1II CATG 6 cut(s) 127, 186, 253, 298, 328, 336
HindIII AAGCTT 2 cut(s) 149, 370
HinfI GANTC 3 cut(s) 220, 394, 441
HpaII CCGG 1 cut(s) 385
HphI GGTGA 2 cut(s) 373, 559
Hpy166II GTNNAC 2 cut(s) 6, 381
Hpy188I TCNGA 4 cut(s) 63, 219, 440, 523
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 6, 381
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 263, 350
HpyCH4V TGCA 2 cut(s) 37, 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 369
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 6 cut(s) 127, 186, 253, 298, 328, 336
Ksp22I TGATCA 2 cut(s) 199, 252
Kzo9I GATC 5 cut(s) 63, 192, 199, 252, 553
LguI GCTCTTC 1 cut(s) 353
LpnPI CCDG 9 cut(s) 37, 256, 283, 290, 317, 328, 340, 398, 493
Lsp1109I GCAGC 3 cut(s) 21, 320, 375
LweI GCATC 2 cut(s) 106, 128
MaeI CTAG 3 cut(s) 275, 543, 571
MaeIII GTNAC 1 cut(s) 350
MalI GATC 5 cut(s) 65, 194, 201, 254, 555
MboI GATC 5 cut(s) 63, 192, 199, 252, 553
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 5 cut(s) 17, 42, 103, 287, 315
MluNI TGGCCA 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 3 cut(s) 103, 321, 469
Mox20I TGGCCA 1 cut(s) 48
Mph1103I ATGCAT 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 3 cut(s) 271, 305, 385
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 2 cut(s) 271, 305
MwoI GCNNNNNNNGC 2 cut(s) 305, 369
NciI CCSGG 1 cut(s) 385
NcoI CCATGG 1 cut(s) 332
NdeII GATC 5 cut(s) 63, 192, 199, 252, 553
NlaIII CATG 6 cut(s) 127, 186, 253, 298, 328, 336
NsiI ATGCAT 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 353
PctI GAATGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 220, 394, 441
PkrI GCNGC 3 cut(s) 36, 310, 365
Psp6I CCWGG 2 cut(s) 269, 303
PspGI CCWGG 2 cut(s) 269, 303
PspPI GGNCC 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 348
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 3 cut(s) 35, 309, 364
Sau3AI GATC 5 cut(s) 63, 192, 199, 252, 553
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 3 cut(s) 271, 305, 385
SduI GDGCHC 1 cut(s) 61
SetI ASST 5 cut(s) 114, 153, 347, 374, 572
SfaNI GCATC 2 cut(s) 106, 128
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 5 cut(s) 17, 42, 103, 287, 315
SsiI CCGC 1 cut(s) 561
SspMI CTAG 3 cut(s) 275, 543, 571
StyD4I CCNGG 3 cut(s) 269, 303, 383
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 263, 350
TaqI TCGA 2 cut(s) 108, 504
TasI AATT 5 cut(s) 17, 42, 103, 287, 315
TfiI GAWTC 3 cut(s) 220, 394, 441
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 56, 202
TseI GCWGC 3 cut(s) 34, 308, 363
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 2 cut(s) 56, 202
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 275, 543, 571
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.