Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

21693939 .. 21698541

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G261000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGACACTTTCAAAGTTGAAGAAATTTCCTTATTCAGATTATTTGCTGCTTCCATTTATTTGCAGCAGGTTAATCAACAAGAAGCATATTATGGAAGAGGGCATGTCAAGCACGGTTTCAAACAGTGGGATGAAAATGAATACTGTAGGAGGAGTATCAGATTCAAGCCTGGCTGCTAATGACTCAACAGACGGTGCTTGTAAGCGTGTGTCTAAGAAGTTCAAAGGAGTTGTTGAGCAGCCAAACGGGCATTGGGGTGCCCAAATATATGCCAATCACGAAAGGGTTTGGCTTGGCACTTTCAATTCTGAGATTGATGCAGCCATGGGTTATGACAGTGCTGCACTCAAGCTTAGGGGTAGAGACTGCCATCGCAACTTTCCGTGGACAGAAACCACCTTTGAAGAGCAGCACTTTCAGAATCAGTACGCCACAGAAGTTGTGCTCATCATGATCAAGGATGGTTCCTACCAGACCAAGTTCTCGGAATTTCGAAGAAGCCGGTCTGGAATTGAGAGTGTGGGGGCTGATGTTCAATTTGGCAGCTTAGCTAGGGTACAAAGCAGCAACGGAAAGGGAGAGCTGTTGGAAGACTTTCTTTTCCAAAAAGAGCTGACGCCAAGCGATGTGGGTAAGCTCAATAGACTTGTGATACCAAGTAAGTATGCGTGTACCTACTTTCCCACTGTTTCTGAAGCCATAAGGGGAAAGGTGGAGAGTTGCTCCAGCCAGCTGACGTTTTATGATAGGATGATGAGGTCATGGACATTCCGGTTCTGTTTTTGGAAGAGCAGCAAGAGTTTTGTATTCACCAAGGGTTGGAGTAGGTTTGTTAGGACACACGATTTGCAGGCCAAAGACACTATCAGATTCTTGCAATGCCAGTACAAGCAATCCGGGGACGGTAATTATAAGGAGCAGCCTCACTCATTCTGCATGATTCAAGTTAAAAAGGATGGTGGTCGAAGCAATGATGTGAGCTGTTTGGTTGAGAATAATGCTAATAGTTACCAATATGATGGTGTTAGGAATGATGGAGGCATGATGGATTCGGATTATAAGTTTAAAGTTGAAGCTGTAAGCCCAAATATTCATGAAGATGAAGATGGAATCCTCCTGGCAGATGAGAAGAAATGTTTCAGGCTCTTTGGAGTGGAAATCAGTGATGTCGATGTGCTTTCTTCGCATTCGATCATAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

401

Amino Acids

45.36

Weight (kDa)

7.95

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	912, 1059
Acc36I	ACCTGC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	819
AcsI	RAATTY	2 cut(s)	23, 488
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	617
AfaI	GTAC	4 cut(s)	428, 558, 673, 887
AfiI	CCNNNNNNNGG	1 cut(s)	819
AjnI	CCWGG	2 cut(s)	168, 1116
AluBI	AGCT	9 cut(s)	352, 546, 551, 583, 613, 637, 733, 981, 1076
AluI	AGCT	9 cut(s)	352, 546, 551, 583, 613, 637, 733, 981, 1076
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	852
ApoI	RAATTY	2 cut(s)	23, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	829, 861
Asp700I	GAANNNNTTC	2 cut(s)	594, 1136
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	1 cut(s)	802
AsuII	TTCGAA	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	447
BccI	CCATC	7 cut(s)	378, 455, 950, 1013, 1028, 1039, 1100
BciT130I	CCWGG	2 cut(s)	170, 1118
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	247
BlpI	GCTNAGC	1 cut(s)	547
Bme1390I	CCNGG	3 cut(s)	170, 898, 1118
BmiI	GGNNCC	2 cut(s)	259, 466
BmrFI	CCNGG	3 cut(s)	170, 898, 1118
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
BpmI	CTGGAG	1 cut(s)	709
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	547
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	898
BsaHI	GRCGYC	1 cut(s)	617
BsaJI	CCNNGG	4 cut(s)	324, 383, 813, 897
BsaWI	WCCGGW	1 cut(s)	771
Bsc4I	CCNNNNNNNGG	1 cut(s)	819
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	883
Bse3DI	GCAATG	2 cut(s)	884, 976
BseBI	CCWGG	2 cut(s)	170, 1118
BseDI	CCNNGG	4 cut(s)	324, 383, 813, 897
BseGI	GGATG	4 cut(s)	135, 466, 756, 961
BseLI	CCNNNNNNNGG	1 cut(s)	819
BseMI	GCAATG	2 cut(s)	884, 976
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	854
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	502, 772, 897
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	1 cut(s)	819
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	914
BsmI	GAATGC	1 cut(s)	1186
BsnI	GGCC	1 cut(s)	854
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	262, 447
Bsp143I	GATC	2 cut(s)	453, 1191
Bsp1720I	GCTNAGC	1 cut(s)	547
Bsp19I	CCATGG	1 cut(s)	324
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	2 cut(s)	450, 1093
BspLI	GGNNCC	2 cut(s)	259, 466
BspMI	ACCTGC	1 cut(s)	57
BspQI	GCTCTTC	2 cut(s)	399, 782
BspT104I	TTCGAA	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	884, 976
BsrFI	RCCGGY	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	883
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	4 cut(s)	324, 383, 813, 897
BssMI	GATC	2 cut(s)	453, 1191
BssNI	GRCGYC	1 cut(s)	617
BssT1I	CCWWGG	2 cut(s)	324, 813
Bst2UI	CCWGG	2 cut(s)	170, 1118
Bst4CI	ACNGT	7 cut(s)	115, 125, 145, 194, 338, 688, 905
Bst6I	CTCTTC	3 cut(s)	90, 399, 782
BstACI	GRCGYC	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	731, 852
BstDEI	CTNAG	4 cut(s)	213, 309, 353, 547
BstDSI	CCRYGG	2 cut(s)	324, 383
BstF5I	GGATG	4 cut(s)	135, 466, 756, 961
BstKTI	GATC	2 cut(s)	456, 1194
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	2 cut(s)	453, 1191
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 247, 1183
BstNI	CCWGG	2 cut(s)	170, 1118
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	3 cut(s)	168, 896, 1116
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	597
BstXI	CCANNNNNNTGG	1 cut(s)	1019
BsuRI	GGCC	1 cut(s)	854
BtgI	CCRYGG	2 cut(s)	324, 383
BtgZI	GCGATG	2 cut(s)	356, 639
BtsCI	GGATG	4 cut(s)	135, 466, 756, 961
BtsIMutI	CAGTG	4 cut(s)	130, 343, 684, 1168
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	731, 852
CciI	TCATGA	2 cut(s)	450, 1093
Cfr10I	RCCGGY	1 cut(s)	501
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	4 cut(s)	427, 557, 672, 886
CspCI	CAANNNNNGTGG	4 cut(s)	421, 456, 609, 644
CviAII	CATG	7 cut(s)	103, 325, 451, 762, 937, 1042, 1094
CviQI	GTAC	4 cut(s)	427, 557, 672, 886
DdeI	CTNAG	4 cut(s)	213, 309, 353, 547
DpnI	GATC	2 cut(s)	455, 1193
DpnII	GATC	2 cut(s)	453, 1191
DraI	TTTAAA	1 cut(s)	1066
Eam1104I	CTCTTC	3 cut(s)	90, 399, 782
EarI	CTCTTC	3 cut(s)	90, 399, 782
Eco130I	CCWWGG	2 cut(s)	324, 813
Eco57I	CTGAAG	1 cut(s)	714
EcoRII	CCWGG	2 cut(s)	168, 1116
EcoT14I	CCWWGG	2 cut(s)	324, 813
ErhI	CCWWGG	2 cut(s)	324, 813
FaeI	CATG	7 cut(s)	106, 328, 454, 765, 940, 1045, 1097
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	7 cut(s)	102, 324, 450, 761, 936, 1041, 1093
FbaI	TGATCA	1 cut(s)	453
FokI	GGATG	4 cut(s)	142, 473, 763, 968
FspBI	CTAG	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	709
HaeIII	GGCC	1 cut(s)	854
HapII	CCGG	3 cut(s)	502, 772, 897
HgaI	GACGC	1 cut(s)	625
Hin1I	GRCGYC	1 cut(s)	617
Hin1II	CATG	7 cut(s)	106, 328, 454, 765, 940, 1045, 1097
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	7 cut(s)	161, 182, 421, 870, 940, 1049, 1110
HpaII	CCGG	3 cut(s)	502, 772, 897
HphI	GGTGA	1 cut(s)	802
Hpy166II	GTNNAC	2 cut(s)	387, 672
Hpy188I	TCNGA	8 cut(s)	37, 160, 310, 420, 487, 694, 869, 1054
Hpy188III	TCNNGA	4 cut(s)	278, 451, 507, 1094
Hpy8I	GTNNAC	2 cut(s)	387, 672
HpyCH4III	ACNGT	7 cut(s)	115, 125, 145, 194, 338, 688, 905
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	6 cut(s)	63, 320, 344, 850, 877, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 247, 1183
HpyF3I	CTNAG	4 cut(s)	213, 309, 353, 547
HpySE526I	ACGT	1 cut(s)	737
Hsp92I	GRCGYC	1 cut(s)	617
Hsp92II	CATG	7 cut(s)	106, 328, 454, 765, 940, 1045, 1097
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	453, 1191
LguI	GCTCTTC	2 cut(s)	399, 782
LmnI	GCTCC	2 cut(s)	728, 916
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	1 cut(s)	1007
MalI	GATC	2 cut(s)	455, 1193
MboI	GATC	2 cut(s)	453, 1191
MhlI	GDGCHC	2 cut(s)	262, 447
MluCI	AATT	6 cut(s)	23, 304, 488, 510, 536, 907
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	567, 800
MnlI	CCTC	6 cut(s)	91, 143, 750, 933, 1031, 1124
MroXI	GAANNNNTTC	2 cut(s)	594, 1136
MseI	TTAA	3 cut(s)	71, 948, 1065
MslI	CAYNNNNRTG	2 cut(s)	255, 1098
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	3 cut(s)	502, 772, 897
MspR9I	CCNGG	3 cut(s)	170, 898, 1118
Mva1269I	GAATGC	1 cut(s)	1186
MvaI	CCWGG	2 cut(s)	170, 1118
MwoI	GCNNNNNNNGC	3 cut(s)	108, 247, 1183
NciI	CCSGG	1 cut(s)	898
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	453, 1191
NlaIII	CATG	7 cut(s)	106, 328, 454, 765, 940, 1045, 1097
NlaIV	GGNNCC	2 cut(s)	259, 466
NspI	RCATGY	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	2 cut(s)	450, 1093
PciSI	GCTCTTC	2 cut(s)	399, 782
PctI	GAATGC	1 cut(s)	1186
PdmI	GAANNNNTTC	2 cut(s)	594, 1136
PfeI	GAWTC	6 cut(s)	161, 421, 870, 940, 1049, 1110
PflMI	CCANNNNNTGG	1 cut(s)	819
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PsiI	TTATAA	2 cut(s)	912, 1059
Psp6I	CCWGG	2 cut(s)	168, 1116
PspGI	CCWGG	2 cut(s)	168, 1116
PspN4I	GGNNCC	2 cut(s)	259, 466
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	4 cut(s)	428, 558, 673, 887
RsaNI	GTAC	4 cut(s)	427, 557, 672, 886
RseI	CAYNNNNRTG	2 cut(s)	255, 1098
SapI	GCTCTTC	2 cut(s)	399, 782
SaqAI	TTAA	3 cut(s)	71, 948, 1065
Sau3AI	GATC	2 cut(s)	453, 1191
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	3 cut(s)	170, 898, 1118
SduI	GDGCHC	2 cut(s)	262, 447
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	493
SmiMI	CAYNNNNRTG	2 cut(s)	255, 1098
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	6 cut(s)	23, 304, 488, 510, 536, 907
SspI	AATATT	1 cut(s)	1090
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	168, 896, 1116
StyI	CCWWGG	2 cut(s)	324, 813
TaaI	ACNGT	7 cut(s)	115, 125, 145, 194, 338, 688, 905
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	4 cut(s)	493, 964, 1170, 1190
TasI	AATT	6 cut(s)	23, 304, 488, 510, 536, 907
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	6 cut(s)	161, 421, 870, 940, 1049, 1110
Tru1I	TTAA	3 cut(s)	71, 948, 1065
Tru9I	TTAA	3 cut(s)	71, 948, 1065
TscAI	CASTG	4 cut(s)	130, 343, 691, 1168
TspDTI	ATGAA	5 cut(s)	146, 152, 1082, 1110, 1116
TspGWI	ACGGA	2 cut(s)	372, 585
TspRI	CASTG	4 cut(s)	130, 343, 691, 1168
Van91I	CCANNNNNTGG	1 cut(s)	819
XapI	RAATTY	2 cut(s)	23, 488
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	249
XmnI	GAANNNNTTC	2 cut(s)	594, 1136
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.