Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

59079013 .. 59081832

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG449300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCCGTTCAAGCTGGCCACCTCAATCTCTTCCCTCTCACCAACTCATCTACAACAACAGCAACAGATCGGATTATCTGCATCAGATCCATCAGATTGGTAAGAATGGTTTTGGAAATGGAAGAGGATTTGTCAAGTACGGCCACAAACGCAGGCACGACAACAAGGCGGAAGAGGACATATCAAGCAGAAGCTTCTATTTCAAGTATCACTGGTTTCTTGGTTCAAGAGAGTAAGCGCTTGAGTCATGGGAGCAGCAATTTGTCTACCAATGCTAAATTTAAAGGAGTTGTGCTGCAACAAATTGGCCACTGGGGTGCTCAGATCTATGCCATTCACAATAGGGTTTGGCTTGGAACATTCAATTCCGAGGTGGACGCAGCCATGTCTTATGATAGTGCTGCAATCAAGTTTCGCAACGGAGAATGCCAAAAGAAACTTTGCATGGACCAAGGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

153

Amino Acids

16.9

Weight (kDa)

9.37

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	4 cut(s)	3, 16, 141, 307
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	1 cut(s)	139
AfeI	AGCGCT	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	11, 204, 227, 364
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	14, 194
AluI	AGCT	2 cut(s)	14, 194
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	81
Aor51HI	AGCGCT	1 cut(s)	239
AoxI	GGCC	4 cut(s)	3, 16, 141, 307
ApeKI	GCWGC	4 cut(s)	255, 295, 380, 401
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	448
BalI	TGGCCA	2 cut(s)	18, 309
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	267, 282, 388, 392
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	241
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	4 cut(s)	256, 296, 381, 402
BlsI	GCNGC	4 cut(s)	257, 297, 382, 403
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	322
BoxI	GACNNNNGTC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	369, 451
Bse1I	ACTGG	2 cut(s)	217, 317
BseDI	CCNNGG	2 cut(s)	369, 451
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	217, 317
BseXI	GCAGC	4 cut(s)	267, 282, 388, 392
BshFI	GGCC	4 cut(s)	5, 18, 143, 309
BsiHKAI	GWGCWC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	4 cut(s)	5, 18, 143, 309
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	3 cut(s)	67, 86, 324
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	4 cut(s)	5, 18, 143, 309
BspCNI	CTCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	217, 317
BssECI	CCNNGG	2 cut(s)	369, 451
BssMI	GATC	3 cut(s)	67, 86, 324
BssT1I	CCWWGG	1 cut(s)	451
Bst6I	CTCTTC	3 cut(s)	35, 117, 167
BstC8I	GCNNGC	2 cut(s)	16, 154
BstDEI	CTNAG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	3 cut(s)	70, 89, 327
BstMBI	GATC	3 cut(s)	67, 86, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 149
BstPAI	GACNNNNGTC	1 cut(s)	453
BstV1I	GCAGC	4 cut(s)	267, 282, 388, 392
BstX2I	RGATCY	2 cut(s)	86, 324
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	2 cut(s)	86, 324
BsuRI	GGCC	4 cut(s)	5, 18, 143, 309
BtsIMutI	CAGTG	3 cut(s)	210, 310, 457
Cac8I	GCNNGC	2 cut(s)	16, 154
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	3 cut(s)	248, 385, 445
CviJI	RGCY	8 cut(s)	5, 14, 18, 143, 194, 309, 352, 383
CviKI_1	RGCY	8 cut(s)	5, 14, 18, 143, 194, 309, 352, 383
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	69, 88, 326
DpnII	GATC	3 cut(s)	67, 86, 324
DraI	TTTAAA	1 cut(s)	283
EaeI	YGGCCR	4 cut(s)	3, 16, 141, 307
Eam1104I	CTCTTC	3 cut(s)	35, 117, 167
EarI	CTCTTC	3 cut(s)	35, 117, 167
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	448
Eco47III	AGCGCT	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	3 cut(s)	251, 388, 448
FaiI	YATR	6 cut(s)	181, 249, 330, 386, 393, 446
FatI	CATG	3 cut(s)	247, 384, 444
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	256, 296, 381, 402
Fsp4HI	GCNGC	4 cut(s)	256, 296, 381, 402
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	4 cut(s)	256, 296, 381, 402
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	4 cut(s)	5, 18, 143, 309
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	251, 388, 448
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	267, 376
Hpy188I	TCNGA	5 cut(s)	72, 86, 95, 324, 370
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	2 cut(s)	267, 376
HpyCH4V	TGCA	4 cut(s)	81, 298, 404, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 149
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	251, 388, 448
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	67, 86, 324
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	3 cut(s)	138, 198, 298
Lsp1109I	GCAGC	4 cut(s)	267, 282, 388, 392
LweI	GCATC	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	3 cut(s)	69, 88, 326
MboI	GATC	3 cut(s)	67, 86, 324
MboII	GAAGA	3 cut(s)	22, 134, 184
MflI	RGATCY	2 cut(s)	86, 324
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	2 cut(s)	18, 309
MluCI	AATT	4 cut(s)	259, 278, 303, 364
MluNI	TGGCCA	2 cut(s)	18, 309
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	5 cut(s)	32, 45, 118, 168, 364
Mox20I	TGGCCA	2 cut(s)	18, 309
MscI	TGGCCA	2 cut(s)	18, 309
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	2 cut(s)	18, 309
Mva1269I	GAATGC	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	11, 149
NdeII	GATC	3 cut(s)	67, 86, 324
NlaIII	CATG	3 cut(s)	251, 388, 448
NmuCI	GTSAC	1 cut(s)	455
OliI	CACNNNNGTG	1 cut(s)	315
PctI	GAATGC	1 cut(s)	431
PkrI	GCNGC	4 cut(s)	257, 297, 382, 403
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	86, 324
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	256, 296, 381, 402
Sau3AI	GATC	3 cut(s)	67, 86, 324
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	5 cut(s)	16, 24, 196, 375, 457
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	4 cut(s)	259, 278, 303, 364
SsiI	CCGC	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	451
TasI	AATT	4 cut(s)	259, 278, 303, 364
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	217, 317
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	4 cut(s)	255, 295, 380, 401
Tsp45I	GTSAC	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	217, 317
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.