Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

18938091 .. 18939149

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGACGAGATGAGCAATGTAGCCAAGACAACGACAGAGACTTCAGGCTTAACTGACTCTGTCTTGAGCCTCACGAAACGCATGAAACCTACTGAGGTTACGACCACCACAAAACCTGCCTTGTCCAACACGACGAAATTCAAAGGAGTTGTTCAGCAACAGAACGGTCATTGGGGTGCTCAGATTTACGCAGACCATCGAAGGATTTGGCTTGGAACTTTCAAATCCGCTCATGAAGCCGCTGCTGCTTACGATAGCGCATCGATTAAGCTTCGAAGCTTTGATGCTAACTCGCACCGGAACTTCCCTTGGTCTGATTTTACCCTCCATGAACCGGACTTTCAAGAGTGCTACACGACAGAAGCTGTGTTGAACATGATCAGAGACGGTTCTTATCAACACAAGTTCAGAGATTTTCTCAGAATCCGGTCTCAGATTGTTGCGAATATCAACATCGTGGGATCAAAACAAGTCTTAGGAGGAGGAGAAGGTGGTCAAGAATCGAACAAGTGTTTCTCGTGCACGCAGCTTTTTCAGAAAGAACTGACACCGAGCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGCCTTTCATAAGCGATGATCAAAGCGAGAAAGAGACGAGTGAAGGAGTAGAAGATGTGGAGGTTGTCTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGAAGGAGAAGAATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAACAATGTGAAGACATTAGAAGGCCAAAGCAAGACCTTCTTGATGATTGATGTTCATCACTTTTCAGGCAACGGTTTCGTGGTTCCCGAGGAAGTAAACAAGACGGTTCATGAGATTTCTGATGAAGAGATGAAAACAGAAACCCTCTTTACCTCGAAGGTAGAAGAAGAAACCAAATCAGAGGAGAAGAAAGGAGGGTTTATGCTGTTTGGTGTTAGGATCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

352

Amino Acids

40.31

Weight (kDa)

6.77

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	45 - 92	4.8e-06	AP2 domain
B3	PF02362	178 - 274	6e-23	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	759
AccBSI	CCGCTC	1 cut(s)	230
AciI	CCGC	2 cut(s)	228, 240
AclWI	GGATC	3 cut(s)	469, 1045, 1058
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	334, 759
AgsI	TTSAA	4 cut(s)	142, 223, 344, 373
AluBI	AGCT	5 cut(s)	271, 279, 365, 529, 741
AluI	AGCT	5 cut(s)	271, 279, 365, 529, 741
Alw21I	GWGCWC	2 cut(s)	181, 524
Alw26I	GTCTC	5 cut(s)	32, 378, 435, 638, 691
Alw44I	GTGCAC	1 cut(s)	520
AlwI	GGATC	3 cut(s)	469, 1045, 1058
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	1 cut(s)	853
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	242, 245, 526
ApoI	RAATTY	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	767
AspLEI	GCGC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	742
AsuII	TTCGAA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	1050
BauI	CACGAG	1 cut(s)	517
BbsI	GAAGAC	2 cut(s)	739, 848
Bbv12I	GWGCWC	2 cut(s)	181, 524
BbvI	GCAGC	3 cut(s)	229, 232, 538
BccI	CCATC	2 cut(s)	204, 753
BcgI	CGANNNNNNTGC	2 cut(s)	889, 923
BclI	TGATCA	2 cut(s)	378, 628
BcoDI	GTCTC	5 cut(s)	32, 378, 435, 638, 691
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	4 cut(s)	240, 243, 246, 527
BlsI	GCNGC	4 cut(s)	241, 244, 247, 528
BmeT110I	CYCGRG	1 cut(s)	917
BmiI	GGNNCC	2 cut(s)	915, 1052
BmsI	GCATC	2 cut(s)	269, 274
BpiI	GAAGAC	2 cut(s)	739, 848
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpmI	CTGGAG	1 cut(s)	745
Bpu14I	TTCGAA	1 cut(s)	274
BpuEI	CTTGAG	2 cut(s)	85, 773
Bsa29I	ATCGAT	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	885
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	308, 918
BsaWI	WCCGGW	3 cut(s)	297, 334, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 759
Bse1I	ACTGG	1 cut(s)	728
Bse3DI	GCAATG	2 cut(s)	22, 699
Bse8I	GATNNNNATC	1 cut(s)	885
BseCI	ATCGAT	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	308, 918
BseGI	GGATG	1 cut(s)	764
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	2 cut(s)	334, 759
BseMI	GCAATG	2 cut(s)	22, 699
BseMII	CTCAG	4 cut(s)	84, 194, 433, 446
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	3 cut(s)	495, 498, 1028
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	229, 232, 538
BshFI	GGCC	1 cut(s)	855
BshVI	ATCGAT	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	181, 524
BsiHKCI	CYCGRG	1 cut(s)	917
BsiSI	CCGG	3 cut(s)	298, 335, 427
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	2 cut(s)	334, 759
BsmAI	GTCTC	5 cut(s)	32, 378, 435, 638, 691
BsmBI	CGTCTC	2 cut(s)	378, 638
BsmFI	GGGAC	1 cut(s)	812
BsnI	GGCC	1 cut(s)	855
Bso31I	GGTCTC	1 cut(s)	435
BsoBI	CYCGRG	1 cut(s)	917
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	181, 524
Bsp143I	GATC	4 cut(s)	378, 461, 628, 1050
BspACI	CCGC	2 cut(s)	228, 240
BspANI	GGCC	1 cut(s)	855
BspCNI	CTCAG	4 cut(s)	85, 193, 432, 445
BspDI	ATCGAT	1 cut(s)	263
BspHI	TCATGA	2 cut(s)	232, 940
BspLI	GGNNCC	2 cut(s)	915, 1052
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	3 cut(s)	469, 1045, 1058
BspT104I	TTCGAA	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	2 cut(s)	22, 699
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	2 cut(s)	308, 918
BssMI	GATC	4 cut(s)	378, 461, 628, 1050
BssSI	CACGAG	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	517
Bst4CI	ACNGT	4 cut(s)	167, 389, 905, 937
Bst6I	CTCTTC	1 cut(s)	951
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	6 cut(s)	93, 180, 419, 432, 475, 588
BstF5I	GGATG	1 cut(s)	764
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	4 cut(s)	381, 464, 631, 1053
BstMAI	GTCTC	5 cut(s)	32, 378, 435, 638, 691
BstMBI	GATC	4 cut(s)	378, 461, 628, 1050
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 245
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	3 cut(s)	229, 232, 538
BstV2I	GAAGAC	2 cut(s)	739, 848
BstX2I	RGATCY	1 cut(s)	1050
BstYI	RGATCY	1 cut(s)	1050
Bsu15I	ATCGAT	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	855
BsuTUI	ATCGAT	1 cut(s)	263
BtgZI	GCGATG	3 cut(s)	570, 639, 837
BtsCI	GGATG	1 cut(s)	764
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	524
CaiI	CAGNNNCTG	1 cut(s)	365
CciI	TCATGA	2 cut(s)	232, 940
CfoI	GCGC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	263
CviAII	CATG	5 cut(s)	82, 233, 329, 376, 941
DdeI	CTNAG	6 cut(s)	93, 180, 419, 432, 475, 588
DpnI	GATC	4 cut(s)	380, 463, 630, 1052
DpnII	GATC	4 cut(s)	378, 461, 628, 1050
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
Eco130I	CCWWGG	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	917
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	2 cut(s)	378, 638
FaeI	CATG	5 cut(s)	85, 236, 332, 379, 944
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	5 cut(s)	81, 232, 328, 375, 940
FbaI	TGATCA	2 cut(s)	378, 628
Fnu4HI	GCNGC	4 cut(s)	240, 243, 246, 527
FokI	GGATG	1 cut(s)	771
Fsp4HI	GCNGC	4 cut(s)	240, 243, 246, 527
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	4 cut(s)	240, 243, 246, 527
GsuI	CTGGAG	1 cut(s)	745
HaeIII	GGCC	1 cut(s)	855
HapII	CCGG	3 cut(s)	298, 335, 427
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	5 cut(s)	85, 236, 332, 379, 944
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	2 cut(s)	269, 277
HinfI	GANTC	4 cut(s)	56, 423, 500, 784
HpaII	CCGG	3 cut(s)	298, 335, 427
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	522, 928
Hpy188I	TCNGA	9 cut(s)	183, 316, 383, 410, 422, 435, 537, 952, 1012
Hpy188III	TCNNGA	9 cut(s)	64, 73, 233, 344, 497, 772, 871, 917, 941
Hpy8I	GTNNAC	2 cut(s)	522, 928
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	7 cut(s)	195, 482, 647, 769, 845, 877, 982
HpyCH4III	ACNGT	4 cut(s)	167, 389, 905, 937
HpyCH4V	TGCA	2 cut(s)	522, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 245
HpyF3I	CTNAG	6 cut(s)	93, 180, 419, 432, 475, 588
Hsp92II	CATG	5 cut(s)	85, 236, 332, 379, 944
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	2 cut(s)	378, 628
Kzo9I	GATC	4 cut(s)	378, 461, 628, 1050
LpnPI	CCDG	9 cut(s)	30, 129, 311, 348, 440, 709, 749, 766, 882
Lsp1109I	GCAGC	3 cut(s)	229, 232, 538
LweI	GCATC	2 cut(s)	269, 274
MaeIII	GTNAC	2 cut(s)	97, 719
MalI	GATC	4 cut(s)	380, 463, 630, 1052
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	4 cut(s)	378, 461, 628, 1050
MboII	GAAGA	8 cut(s)	674, 739, 793, 853, 968, 1007, 1010, 1030
MflI	RGATCY	1 cut(s)	1050
MhlI	GDGCHC	2 cut(s)	181, 524
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	767
MseI	TTAA	2 cut(s)	50, 267
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	3 cut(s)	298, 335, 427
MwoI	GCNNNNNNNGC	2 cut(s)	236, 245
NdeII	GATC	4 cut(s)	378, 461, 628, 1050
NlaIII	CATG	5 cut(s)	85, 236, 332, 379, 944
NlaIV	GGNNCC	2 cut(s)	915, 1052
NspV	TTCGAA	1 cut(s)	274
PagI	TCATGA	2 cut(s)	232, 940
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	767
PfeI	GAWTC	3 cut(s)	423, 500, 784
PflFI	GACNNNGTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	4 cut(s)	241, 244, 247, 528
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	915, 1052
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	1050
PsyI	GACNNNGTC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	50, 267
SatI	GCNGC	4 cut(s)	240, 243, 246, 527
Sau3AI	GATC	4 cut(s)	378, 461, 628, 1050
SchI	GAGTC	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	181, 524
SfaNI	GCATC	2 cut(s)	269, 274
SfuI	TTCGAA	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	2 cut(s)	64, 788
SmoI	CTYRAG	2 cut(s)	64, 788
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	228, 240
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	4 cut(s)	167, 389, 905, 937
TaqI	TCGA	5 cut(s)	199, 263, 274, 503, 986
TasI	AATT	1 cut(s)	137
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	3 cut(s)	423, 500, 784
Tru1I	TTAA	2 cut(s)	50, 267
Tru9I	TTAA	2 cut(s)	50, 267
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	3 cut(s)	242, 245, 526
TspDTI	ATGAA	8 cut(s)	98, 249, 345, 607, 875, 929, 969, 977
TspRI	CASTG	1 cut(s)	606
Tth111I	GACNNNGTC	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	759
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.