Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

1088830 .. 1089900

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G015000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAGAAGATGCTGCATCAAGCATGATTTCAAGAGTCCAAAGAAATGTAGCTCTCGAAACTTCTGGTTCAAACGACAACGATTTTGGACTGCTTCATCCAAATAAGCGTGCGAGACTTGACAATGATGTCTCATTTGCAAAATTTAAAGGGGTTGTGCCACAACAAAATGGTCACTGGGGTGCACAAATATATGCAAACCACCAAAGAATTTGGCTTGGCACCTTCAAGTCCGAGAAGGAAGCTGCCATGGCTTACGATAGTGCGGCAATCAAGCTTCGAAATGGTAAAGATTTGCATAGAAATTTTCCATGGACCAATTTCACCATTCAAGAGCCTGATTTTCAAAACCATTACACAACAGATGCAATAATAAAAATGATTAGGGATGGTTCCTATCCATCCAAATTTGATGCATTTATAAGGTCACAAAAACAATCACAAACTGAGGAAATGGGCAAGGGTAACAACTCAATTAGGGTGCATGGTGATGGGAAAATATTGTCTAGGCAACTCTTCCAAAAAGAATTGACACCAAGTGATGTGGGCAAGCTCAATAGGCTTGTAATTCCCAAGAAATATGCTGTTGAGTATTTCCCTTGTATTTGTGAGAATGTGGAAGAAAATGGGGTTGATGACATTGAGCTGGTTTTCTATGACAAGCTCATGAGGGTGTGGAAGTTTAGGTATTGCTATTGGAAGAGTAGCCAAAGCTTTGTGTTCACAAGGGGTTGGAATAGGTTTGTGAAGGAAAACAATTTGAAGGCAAATGATGTGATCACATTTTATACATGTGAGAATGATGATCAATTGAGAGAGGAAGACAGAGAAAGTGCTACATTTTGGTTAATTGATGTGATGCATATTGAGGGTGAAAGCAAGAGATCATGTTTGCTTGAGCAGGAGATCAATAAGCATGAGTGTGAGGATTTGCAGGTCAAATTGGAACTGAATTTGGGGGGAAGTAGCAGCTACAAGTTTCAGCAAGGTGAATGTAAGTATAGTGAAGATCACAAGGCATCCATGGCTGACCAAAAAGGATTTAGACTCTTTGGTGTTAATATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

357

Amino Acids

41.3

Weight (kDa)

6.18

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	266
AcsI	RAATTY	5 cut(s)	143, 210, 304, 407, 952
AdeI	CACNNNGTG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	791
AgsI	TTSAA	6 cut(s)	33, 72, 229, 332, 347, 763
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	8 cut(s)	53, 245, 277, 553, 646, 664, 714, 972
AluI	AGCT	8 cut(s)	53, 245, 277, 553, 646, 664, 714, 972
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	109, 136
Alw44I	GTGCAC	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	14, 245, 969
ApoI	RAATTY	5 cut(s)	143, 210, 304, 407, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AseI	ATTAAT	1 cut(s)	1065
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	4 cut(s)	316, 500, 884, 1001
AsuII	TTCGAA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	232, 981
BccI	CCATC	3 cut(s)	383, 409, 485
BclI	TGATCA	2 cut(s)	777, 805
BcoDI	GTCTC	2 cut(s)	109, 136
BfaI	CTAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	925
BisI	GCNGC	4 cut(s)	15, 246, 267, 970
BlsI	GCNGC	4 cut(s)	16, 247, 268, 971
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	223, 394
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	5 cut(s)	26, 355, 403, 849, 1028
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	917
BsaJI	CCNNGG	3 cut(s)	249, 311, 1023
Bse1I	ACTGG	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	249, 311, 1023
BseGI	GGATG	4 cut(s)	97, 394, 401, 1019
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	232, 981
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	109, 136
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	777, 805, 884, 906, 1009
Bsp19I	CCATGG	3 cut(s)	249, 311, 1023
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	223, 394
BspMI	ACCTGC	1 cut(s)	925
BspT104I	TTCGAA	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	249, 311, 1023
BssMI	GATC	5 cut(s)	777, 805, 884, 906, 1009
BssT1I	CCWWGG	3 cut(s)	249, 311, 1023
Bst6I	CTCTTC	2 cut(s)	521, 695
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	111, 551
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	3 cut(s)	249, 311, 1023
BstF5I	GGATG	4 cut(s)	97, 394, 401, 1019
BstKTI	GATC	5 cut(s)	780, 808, 887, 909, 1012
BstMAI	GTCTC	2 cut(s)	109, 136
BstMBI	GATC	5 cut(s)	777, 805, 884, 906, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 559, 1025
BstNSI	RCATGY	1 cut(s)	795
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	232, 981
BstV2I	GAAGAC	1 cut(s)	828
BtgI	CCRYGG	3 cut(s)	249, 311, 1023
BtsCI	GGATG	4 cut(s)	97, 394, 401, 1019
BtsIMutI	CAGTG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	2 cut(s)	111, 551
CciI	TCATGA	1 cut(s)	666
Cfr13I	GGNCC	1 cut(s)	315
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	9 cut(s)	25, 250, 312, 485, 667, 792, 888, 917, 1024
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	5 cut(s)	779, 807, 886, 908, 1011
DpnII	GATC	5 cut(s)	777, 805, 884, 906, 1009
DraI	TTTAAA	1 cut(s)	148
DraIII	CACNNNGTG	1 cut(s)	539
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	521, 695
EarI	CTCTTC	2 cut(s)	521, 695
Eco130I	CCWWGG	3 cut(s)	249, 311, 1023
Eco47I	GGWCC	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	249, 311, 1023
EcoT22I	ATGCAT	2 cut(s)	418, 864
ErhI	CCWWGG	3 cut(s)	249, 311, 1023
FaeI	CATG	9 cut(s)	28, 253, 315, 488, 670, 795, 891, 920, 1027
FatI	CATG	9 cut(s)	24, 249, 311, 484, 666, 791, 887, 916, 1023
FbaI	TGATCA	2 cut(s)	777, 805
Fnu4HI	GCNGC	4 cut(s)	15, 246, 267, 970
FokI	GGATG	4 cut(s)	84, 388, 401, 1006
Fsp4HI	GCNGC	4 cut(s)	15, 246, 267, 970
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	4 cut(s)	15, 246, 267, 970
Hin1II	CATG	9 cut(s)	28, 253, 315, 488, 670, 795, 891, 920, 1027
HindIII	AAGCTT	2 cut(s)	275, 712
HinfI	GANTC	2 cut(s)	36, 1047
HphI	GGTGA	4 cut(s)	316, 500, 884, 1001
Hpy166II	GTNNAC	2 cut(s)	185, 723
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	4 cut(s)	33, 56, 332, 667
Hpy8I	GTNNAC	2 cut(s)	185, 723
HpyAV	CCTTC	4 cut(s)	232, 235, 742, 757
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 559, 1025
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	9 cut(s)	28, 253, 315, 488, 670, 795, 891, 920, 1027
Ksp22I	TGATCA	2 cut(s)	777, 805
Kzo9I	GATC	5 cut(s)	777, 805, 884, 906, 1009
LpnPI	CCDG	6 cut(s)	51, 163, 351, 632, 887, 920
Lsp1109I	GCAGC	2 cut(s)	232, 981
LweI	GCATC	5 cut(s)	26, 355, 403, 849, 1028
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	3 cut(s)	173, 426, 464
MalI	GATC	5 cut(s)	779, 807, 886, 908, 1011
MboI	GATC	5 cut(s)	777, 805, 884, 906, 1009
MboII	GAAGA	7 cut(s)	17, 20, 508, 632, 712, 833, 1019
MfeI	CAATTG	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	187
MlyI	GAGTC	2 cut(s)	45, 1041
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	5 cut(s)	442, 663, 811, 862, 919
Mph1103I	ATGCAT	2 cut(s)	418, 864
MseI	TTAA	5 cut(s)	147, 848, 1059, 1065, 1069
MslI	CAYNNNNRTG	4 cut(s)	180, 489, 671, 921
MunI	CAATTG	1 cut(s)	809
MwoI	GCNNNNNNNGC	3 cut(s)	251, 559, 1025
NcoI	CCATGG	3 cut(s)	249, 311, 1023
NdeII	GATC	5 cut(s)	777, 805, 884, 906, 1009
NlaIII	CATG	9 cut(s)	28, 253, 315, 488, 670, 795, 891, 920, 1027
NlaIV	GGNNCC	2 cut(s)	223, 394
NmuCI	GTSAC	2 cut(s)	173, 426
NsiI	ATGCAT	2 cut(s)	418, 864
NspI	RCATGY	1 cut(s)	795
NspV	TTCGAA	1 cut(s)	280
OliI	CACNNNNGTG	1 cut(s)	180
PacI	TTAATTAA	1 cut(s)	1069
PagI	TCATGA	1 cut(s)	666
PciI	ACATGT	1 cut(s)	791
PkrI	GCNGC	4 cut(s)	16, 247, 268, 971
PleI	GAGTC	2 cut(s)	44, 1041
PpsI	GAGTC	2 cut(s)	44, 1041
PscI	ACATGT	1 cut(s)	791
PshBI	ATTAAT	1 cut(s)	1065
PsiI	TTATAA	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	223, 394
PspPI	GGNCC	1 cut(s)	315
RseI	CAYNNNNRTG	4 cut(s)	180, 489, 671, 921
SaqAI	TTAA	5 cut(s)	147, 848, 1059, 1065, 1069
SatI	GCNGC	4 cut(s)	15, 246, 267, 970
Sau3AI	GATC	5 cut(s)	777, 805, 884, 906, 1009
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	2 cut(s)	45, 1041
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	5 cut(s)	26, 355, 403, 849, 1028
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	4 cut(s)	180, 489, 671, 921
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SsiI	CCGC	1 cut(s)	266
SspI	AATATT	2 cut(s)	501, 1063
SspMI	CTAG	1 cut(s)	507
StyI	CCWWGG	3 cut(s)	249, 311, 1023
TaqI	TCGA	2 cut(s)	57, 280
TauI	GCSGC	1 cut(s)	269
Tru1I	TTAA	5 cut(s)	147, 848, 1059, 1065, 1069
Tru9I	TTAA	5 cut(s)	147, 848, 1059, 1065, 1069
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	2 cut(s)	173, 426
TseI	GCWGC	3 cut(s)	14, 245, 969
Tsp45I	GTSAC	2 cut(s)	173, 426
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	1065
XapI	RAATTY	5 cut(s)	143, 210, 304, 407, 952
XceI	RCATGY	1 cut(s)	795
XspI	CTAG	1 cut(s)	507
Zsp2I	ATGCAT	2 cut(s)	418, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.