Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

57907491 .. 57907835

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG430500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAGAGGATTTGTCAAGTACGGCCACAAACGCAGGCACGACAACAAGGCGGAAGAGGACATATCAAGCAGAAGCTTCTATTTCAAGTATCACTGGTTTCTTGGTTCAAGAGAGTAAGCGCTTGAGTCATGGGAGCAGCAATTTGTCTACCAATGCTAAATTTAAAGGAGTTGTGCTGCAACAAATTGGCCACTGGGGTGCTCAGATCTATGCCATTCACAATAGGGTTTGGCTTGGAACATTCAATTCCGAGGTGGACGCAGCCATGTCTTATGATAGTGCTGCAATCAAGTTTCGCAACGGAGAATGCCAAAAGAAACTTTGCATGGACCAAGGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

114

Amino Acids

12.57

Weight (kDa)

9.03

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	24, 190
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	1 cut(s)	22
AfeI	AGCGCT	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	87, 110, 247
AleI	CACNNNNGTG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw21I	GWGCWC	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	24, 190
ApeKI	GCWGC	4 cut(s)	138, 178, 263, 284
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	150, 165, 271, 275
BceAI	ACGGC	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	124
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	4 cut(s)	139, 179, 264, 285
BlsI	GCNGC	4 cut(s)	140, 180, 265, 286
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	205
BoxI	GACNNNNGTC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	252, 334
Bse1I	ACTGG	2 cut(s)	100, 200
BseDI	CCNNGG	2 cut(s)	252, 334
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	100, 200
BseXI	GCAGC	4 cut(s)	150, 165, 271, 275
BshFI	GGCC	2 cut(s)	26, 192
BsiHKAI	GWGCWC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	26, 192
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	26, 192
BspCNI	CTCAG	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	100, 200
BssECI	CCNNGG	2 cut(s)	252, 334
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	150, 165, 271, 275
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	26, 192
BtsIMutI	CAGTG	3 cut(s)	93, 193, 340
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	131, 268, 328
CviJI	RGCY	5 cut(s)	26, 77, 192, 235, 266
CviKI_1	RGCY	5 cut(s)	26, 77, 192, 235, 266
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
DraI	TTTAAA	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	24, 190
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	331
Eco47III	AGCGCT	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	134, 271, 331
FaiI	YATR	6 cut(s)	64, 132, 213, 269, 276, 329
FatI	CATG	3 cut(s)	130, 267, 327
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	139, 179, 264, 285
Fsp4HI	GCNGC	4 cut(s)	139, 179, 264, 285
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	139, 179, 264, 285
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	26, 192
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	134, 271, 331
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	150, 259
Hpy188I	TCNGA	2 cut(s)	207, 253
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	150, 259
HpyCH4V	TGCA	3 cut(s)	181, 287, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	134, 271, 331
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	3 cut(s)	21, 81, 181
Lsp1109I	GCAGC	4 cut(s)	150, 165, 271, 275
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	2 cut(s)	17, 67
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	4 cut(s)	142, 161, 186, 247
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	51, 247
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	3 cut(s)	134, 271, 331
NmuCI	GTSAC	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	198
PctI	GAATGC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	140, 180, 265, 286
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PshAI	GACNNNNGTC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	139, 179, 264, 285
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	3 cut(s)	79, 258, 340
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	142, 161, 186, 247
SsiI	CCGC	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	334
TasI	AATT	4 cut(s)	142, 161, 186, 247
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	100, 200
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	4 cut(s)	138, 178, 263, 284
Tsp45I	GTSAC	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	100, 200
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.