Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Reverse (-)

11446592 .. 11449849

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1154300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGAGGGCATGTCAAGAACGATCTCAAATGTCGGGGTGAAACGCGATGTTGAAGAAGTTTGTGATCCAAACCTTGCTGCGAATGACTCATCAGATGGTGCTAGTAGGCATGTATCGAAGAGGTTCAAAGGCGTTGTTGAGCAGCCAAATGGGCATTGGGGTGCCCAGATATATGCCAATCACGAAAGGGTTTGGCTTGGCACGTTCAGTTCTGAGAATGAAGCAGCTATGGCTTATGATAGCGCTGCAATCAAGCTTCGCGGTTGGGAGTGCCATCGCAACTTTCCGTGGACCAAAGTCACCTTTGAAGAGCCACACTTTCAAAATCAGTACTCCAAAGAAGCTGTGTTGAGAATGATCAAGGATAGTTCCTACCAAGCTGAGTTCTTAGAATATCGAAAGAGTTGTGCTGCAAGCAAGAGTTTGAGGAGTGGTATTCAATTTGACAGCTTGGTTAGGGTGCATAGCAATGGAAATGCAAAGATGTTGAATCGACTTCTTTTCCAAAAAGAGCTGACGCCAAGTGATGTGAGTAAGCTGAATAGACTTGTGATACCGGTTACCAATGCTAAACGGTGCTTTCCCAGCATATCGGAATCCATAAGTCAGAAGGTTGAGAGTGGCTCCAGCCAGCTGGTGTTTTACGATAAGATGATGAGGTCGTGGACTTTCCGGTACTGTTATTGGAAGAGCAGCAGGAGTTTTGTGTTCACCAGGGGTTGGAGTCGGTTCGTAAAGACGCACCATTTGAAGGCCAAAGACATTCTTACATTCTTTCAGTGCCATTACAAGCAATTGGGGGACAATGGTAACAAGGAGCCACAAACTTTTTACATGGTTAAAGTTAACTGGGATGGTGCTGAAAGCGAAGACGACAACATTAACTGCTTGGTTGAGAATGATGCTAATAATTACCAATATGATAAATGTAAACTAGAATCTGTAAGCCAAAATATTAATGAAGCTGAAGGAATCCGTGCTGATCAAAAGAAACGTTTCAGGCTCTTCGGCGTGGAGATCTGCAACGAGGTGGCGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

348

Amino Acids

40.04

Weight (kDa)

8.6

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	42 - 89	3.2e-07	AP2 domain
B3	PF02362	169 - 259	1.9e-21	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	723
AccII	CGCG	2 cut(s)	48, 264
AciI	CCGC	1 cut(s)	264
AclI	AACGTT	1 cut(s)	997
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	990
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	2 cut(s)	335, 680
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	723, 754
AgeI	ACCGGT	1 cut(s)	559
AgsI	TTSAA	7 cut(s)	56, 130, 311, 326, 443, 493, 754
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	9 cut(s)	230, 259, 347, 383, 453, 517, 541, 637, 968
AluI	AGCT	9 cut(s)	230, 259, 347, 383, 453, 517, 541, 637, 968
AlwI	GGATC	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	1 cut(s)	756
ApeKI	GCWGC	6 cut(s)	80, 145, 227, 248, 413, 696
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
AseI	ATTAAT	1 cut(s)	960
AsiGI	ACCGGT	1 cut(s)	559
Asp700I	GAANNNNTTC	2 cut(s)	125, 998
AspLEI	GCGC	2 cut(s)	248, 1039
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	52, 295, 706
AvaII	GGWCC	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	879
BbvI	GCAGC	6 cut(s)	67, 157, 235, 239, 400, 708
BccI	CCATC	3 cut(s)	92, 285, 851
BciT130I	CCWGG	1 cut(s)	718
BclI	TGATCA	2 cut(s)	360, 985
BfaI	CTAG	2 cut(s)	105, 938
BfoI	RGCGCY	1 cut(s)	249
BglI	GCCNNNNNGGC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	1020
BisI	GCNGC	6 cut(s)	81, 146, 228, 249, 414, 697
BlsI	GCNGC	6 cut(s)	82, 147, 229, 250, 415, 698
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	3 cut(s)	166, 628, 822
BmrFI	CCNGG	1 cut(s)	718
BmrI	ACTGGG	1 cut(s)	862
BmsI	GCATC	1 cut(s)	895
BmuI	ACTGGG	1 cut(s)	862
BoxI	GACNNNNGTC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	879
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
BpmI	CTGGAG	1 cut(s)	613
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	290, 717
BsaWI	WCCGGW	2 cut(s)	559, 675
Bsc4I	CCNNNNNNNGG	2 cut(s)	723, 754
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	857
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	290, 717
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	2 cut(s)	723, 754
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	207, 375
BseNI	ACTGG	1 cut(s)	857
BseRI	GAGGAG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	6 cut(s)	67, 157, 235, 239, 400, 708
BseYI	CCCAGC	1 cut(s)	587
Bsh1236I	CGCG	2 cut(s)	48, 264
BshFI	GGCC	1 cut(s)	758
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	559
BsiSI	CCGG	2 cut(s)	560, 676
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	2 cut(s)	723, 754
BsmFI	GGGAC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	758
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	24, 67, 360, 985, 1020
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	758
BspCNI	CTCAG	2 cut(s)	208, 376
BspFNI	CGCG	2 cut(s)	48, 264
BspLI	GGNNCC	3 cut(s)	166, 628, 822
BspPI	GGATC	1 cut(s)	62
BspQI	GCTCTTC	3 cut(s)	306, 686, 1013
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	857
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	2 cut(s)	290, 717
BssMI	GATC	5 cut(s)	24, 67, 360, 985, 1020
BssNI	GRCGYC	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	2 cut(s)	579, 683
Bst6I	CTCTTC	4 cut(s)	116, 306, 686, 1013
BstACI	GRCGYC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	418, 635
BstDEI	CTNAG	3 cut(s)	216, 384, 391
BstDSI	CCRYGG	1 cut(s)	290
BstEII	GGTNACC	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	862
BstFNI	CGCG	2 cut(s)	48, 264
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	248, 1039
BstKTI	GATC	5 cut(s)	27, 70, 363, 988, 1023
BstMBI	GATC	5 cut(s)	24, 67, 360, 985, 1020
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 233, 588
BstNI	CCWGG	1 cut(s)	718
BstNSI	RCATGY	2 cut(s)	16, 116
BstPAI	GACNNNNGTC	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	716
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	2 cut(s)	48, 264
BstV1I	GCAGC	6 cut(s)	67, 157, 235, 239, 400, 708
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	1 cut(s)	1020
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	1020
BsuRI	GGCC	1 cut(s)	758
BtgI	CCRYGG	1 cut(s)	290
BtgZI	GCGATG	2 cut(s)	63, 263
BtsCI	GGATG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	2 cut(s)	418, 635
CfoI	GCGC	2 cut(s)	248, 1039
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	2 cut(s)	529, 751
Csp6I	GTAC	2 cut(s)	334, 679
CspAI	ACCGGT	1 cut(s)	559
CviAII	CATG	3 cut(s)	13, 113, 838
CviQI	GTAC	2 cut(s)	334, 679
DdeI	CTNAG	3 cut(s)	216, 384, 391
DpnI	GATC	5 cut(s)	26, 69, 362, 987, 1022
DpnII	GATC	5 cut(s)	24, 67, 360, 985, 1020
Eam1104I	CTCTTC	4 cut(s)	116, 306, 686, 1013
EarI	CTCTTC	4 cut(s)	116, 306, 686, 1013
Eco47I	GGWCC	1 cut(s)	294
Eco47III	AGCGCT	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	990
Eco91I	GGTNACC	1 cut(s)	562
EcoO65I	GGTNACC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	716
FaeI	CATG	3 cut(s)	16, 116, 841
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	3 cut(s)	12, 112, 837
FbaI	TGATCA	2 cut(s)	360, 985
Fnu4HI	GCNGC	6 cut(s)	81, 146, 228, 249, 414, 697
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	6 cut(s)	81, 146, 228, 249, 414, 697
FspBI	CTAG	2 cut(s)	105, 938
GlaI	GCGC	2 cut(s)	247, 1038
GluI	GCNGC	6 cut(s)	81, 146, 228, 249, 414, 697
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	613
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	758
HapII	CCGG	2 cut(s)	560, 676
HgaI	GACGC	2 cut(s)	529, 751
HhaI	GCGC	2 cut(s)	248, 1039
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	16, 116, 841
Hin6I	GCGC	2 cut(s)	246, 1037
HinP1I	GCGC	2 cut(s)	246, 1037
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	6 cut(s)	89, 493, 599, 727, 941, 975
HpaI	GTTAAC	1 cut(s)	850
HpaII	CCGG	2 cut(s)	560, 676
HphI	GGTGA	3 cut(s)	52, 295, 706
Hpy166II	GTNNAC	5 cut(s)	294, 669, 714, 850, 935
Hpy188I	TCNGA	4 cut(s)	97, 217, 598, 612
Hpy188III	TCNNGA	2 cut(s)	18, 185
Hpy8I	GTNNAC	5 cut(s)	294, 669, 714, 850, 935
HpyAV	CCTTC	3 cut(s)	607, 748, 965
HpyCH4III	ACNGT	2 cut(s)	579, 683
HpyCH4IV	ACGT	2 cut(s)	206, 997
HpyCH4V	TGCA	5 cut(s)	251, 416, 466, 482, 1026
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 233, 588
HpyF3I	CTNAG	3 cut(s)	216, 384, 391
HpySE526I	ACGT	2 cut(s)	206, 997
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	3 cut(s)	16, 116, 841
HspAI	GCGC	2 cut(s)	246, 1037
Ksp22I	TGATCA	2 cut(s)	360, 985
KspAI	GTTAAC	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	24, 67, 360, 985, 1020
LguI	GCTCTTC	3 cut(s)	306, 686, 1013
LmnI	GCTCC	2 cut(s)	632, 820
Lsp1109I	GCAGC	6 cut(s)	67, 157, 235, 239, 400, 708
LweI	GCATC	1 cut(s)	895
MaeI	CTAG	2 cut(s)	105, 938
MaeII	ACGT	2 cut(s)	206, 997
MaeIII	GTNAC	3 cut(s)	301, 562, 812
MalI	GATC	5 cut(s)	26, 69, 362, 987, 1022
MboI	GATC	5 cut(s)	24, 67, 360, 985, 1020
MboII	GAAGA	7 cut(s)	17, 68, 133, 323, 703, 884, 1000
MfeI	CAATTG	1 cut(s)	797
MflI	RGATCY	1 cut(s)	1020
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	443, 797, 913
MlyI	GAGTC	2 cut(s)	83, 736
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	4 cut(s)	117, 423, 654, 1024
MroXI	GAANNNNTTC	2 cut(s)	125, 998
MseI	TTAA	4 cut(s)	843, 849, 885, 960
MslI	CAYNNNNRTG	2 cut(s)	162, 471
MspA1I	CMGCKG	1 cut(s)	637
MspI	CCGG	2 cut(s)	560, 676
MspR9I	CCNGG	1 cut(s)	718
MunI	CAATTG	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	718
MvnI	CGCG	2 cut(s)	48, 264
MwoI	GCNNNNNNNGC	3 cut(s)	154, 233, 588
NdeII	GATC	5 cut(s)	24, 67, 360, 985, 1020
NlaIII	CATG	3 cut(s)	16, 116, 841
NlaIV	GGNNCC	3 cut(s)	166, 628, 822
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	2 cut(s)	16, 116
PciSI	GCTCTTC	3 cut(s)	306, 686, 1013
PdmI	GAANNNNTTC	2 cut(s)	125, 998
PfeI	GAWTC	4 cut(s)	493, 599, 941, 975
PflMI	CCANNNNNTGG	1 cut(s)	723
PinAI	ACCGGT	1 cut(s)	559
PkrI	GCNGC	6 cut(s)	82, 147, 229, 250, 415, 698
PleI	GAGTC	2 cut(s)	83, 735
PpsI	GAGTC	2 cut(s)	83, 735
PshAI	GACNNNNGTC	1 cut(s)	299
PshBI	ATTAAT	1 cut(s)	960
Psp1406I	AACGTT	1 cut(s)	997
Psp6I	CCWGG	1 cut(s)	716
PspEI	GGTNACC	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	3 cut(s)	166, 628, 822
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	1020
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	2 cut(s)	335, 680
RsaNI	GTAC	2 cut(s)	334, 679
RseI	CAYNNNNRTG	2 cut(s)	162, 471
SapI	GCTCTTC	3 cut(s)	306, 686, 1013
SaqAI	TTAA	4 cut(s)	843, 849, 885, 960
SatI	GCNGC	6 cut(s)	81, 146, 228, 249, 414, 697
Sau3AI	GATC	5 cut(s)	24, 67, 360, 985, 1020
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	2 cut(s)	83, 736
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	895
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	162, 471
Sse9I	AATT	3 cut(s)	443, 797, 913
SsiI	CCGC	1 cut(s)	264
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	2 cut(s)	105, 938
StyD4I	CCNGG	1 cut(s)	716
TaaI	ACNGT	2 cut(s)	579, 683
TaiI	ACGT	2 cut(s)	209, 1000
TaqI	TCGA	3 cut(s)	119, 400, 496
TasI	AATT	3 cut(s)	443, 797, 913
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	4 cut(s)	493, 599, 941, 975
Tru1I	TTAA	4 cut(s)	843, 849, 885, 960
Tru9I	TTAA	4 cut(s)	843, 849, 885, 960
TscAI	CASTG	1 cut(s)	788
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	6 cut(s)	80, 145, 227, 248, 413, 696
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	237, 978
TspGWI	ACGGA	2 cut(s)	279, 968
TspRI	CASTG	1 cut(s)	788
Van91I	CCANNNNNTGG	1 cut(s)	723
VpaK11BI	GGWCC	1 cut(s)	294
VspI	ATTAAT	1 cut(s)	960
XceI	RCATGY	2 cut(s)	16, 116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmnI	GAANNNNTTC	2 cut(s)	125, 998
XspI	CTAG	2 cut(s)	105, 938
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.