Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

50519307 .. 50520303

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTATGGAAATGGAAGAGGATTTGTCAAGCATGGTATCTAACGCAGGCACGACAACAAGGCAGAAGAGGACATATCAAGCAGAAGCTTCTGTTTCAAGCATCACTGGTTTCTTGGTCCAAGAGAGTAAGCGCTTGAGTCATGGGAGCAGCAATTTGTCTGCCAATACCAAATTTAAAGGAGTTGTACTGCAACAAAATGGCCACTGGGGTGCTCAGATCTATGCCAATCACAATAGGGTTTGGCTCGGAACATTCAATTCTGAGGTGGATGCAGCCATGGCTTATGATAGTGCTGCAATCAAGCTTCGCAACGGAGAGTGCCAAAGGAACTTTGCATGGACCAAGGTCACTGATCAAGAGCCATACTTTCAGAAAGAGCTGACGCCAAGCGATGTTGGTAAGCTGAACAGACTTGTCATACCCAAAAATTATGCAACTAAATACTTCCCTCGTATTGATGAATCCATGCAGGGAGGGTTGGATGACAACCCGGCTCCTGATAAGTTCAGGTACTGTTATTGGAAGAGCAGCCAAAGCTTTGTGTTCACCCGGGGTTGGAATCGGTTTCCTTACCCCCTTGCATGCCAAGAAATTTGGAGTGGAGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

204

Amino Acids

23.25

Weight (kDa)

8.7

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	57 - 105	7.3e-07	AP2 domain
B3	PF02362	124 - 190	2.5e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	173, 594
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	2 cut(s)	189, 515
AfeI	AGCGCT	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	99, 259
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	5 cut(s)	89, 307, 382, 406, 540
AluI	AGCT	5 cut(s)	89, 307, 382, 406, 540
Alw21I	GWGCWC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	552
Aor51HI	AGCGCT	1 cut(s)	134
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	150, 275, 296, 531
ApoI	RAATTY	2 cut(s)	173, 594
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	118, 342
AsuC2I	CCSGG	3 cut(s)	494, 553, 554
AsuHPI	GGTGA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	2 cut(s)	118, 342
BalI	TGGCCA	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	162, 283, 287, 543
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	3 cut(s)	494, 553, 554
BfoI	RGCGCY	1 cut(s)	136
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	4 cut(s)	151, 276, 297, 532
BlsI	GCNGC	4 cut(s)	152, 277, 298, 533
Bme1390I	CCNGG	3 cut(s)	494, 553, 554
Bme18I	GGWCC	2 cut(s)	118, 342
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	118, 342
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	3 cut(s)	494, 553, 554
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	2 cut(s)	111, 262
BmuI	ACTGGG	1 cut(s)	217
BoxI	GACNNNNGTC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	3 cut(s)	494, 553, 554
BsaHI	GRCGYC	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	279, 345, 552, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	2 cut(s)	112, 212
BseDI	CCNNGG	4 cut(s)	279, 345, 552, 553
BseGI	GGATG	2 cut(s)	277, 490
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	230, 255
BseNI	ACTGG	2 cut(s)	112, 212
BseXI	GCAGC	4 cut(s)	162, 283, 287, 543
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	2 cut(s)	494, 553
BslI	CCNNNNNNNGG	1 cut(s)	558
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	219, 355
Bsp19I	CCATGG	1 cut(s)	279
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	229, 256
BspLI	GGNNCC	1 cut(s)	498
BspQI	GCTCTTC	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	112, 212
BssECI	CCNNGG	4 cut(s)	279, 345, 552, 553
BssMI	GATC	2 cut(s)	219, 355
BssNI	GRCGYC	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	279, 345
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	3 cut(s)	12, 62, 521
BstACI	GRCGYC	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	49, 586
BstDEI	CTNAG	2 cut(s)	216, 264
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	277, 490
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	222, 358
BstMBI	GATC	2 cut(s)	219, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 537
BstNSI	RCATGY	1 cut(s)	588
BstPAI	GACNNNNGTC	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	492, 551, 552
BstV1I	GCAGC	4 cut(s)	162, 283, 287, 543
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	277, 490
BtsIMutI	CAGTG	3 cut(s)	105, 205, 351
Cac8I	GCNNGC	2 cut(s)	49, 586
CaiI	CAGNNNCTG	1 cut(s)	516
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	118, 342
Cfr9I	CCCGGG	1 cut(s)	552
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	188, 514
CviAII	CATG	6 cut(s)	34, 143, 280, 339, 469, 585
CviQI	GTAC	2 cut(s)	188, 514
DdeI	CTNAG	2 cut(s)	216, 264
DpnI	GATC	2 cut(s)	221, 357
DpnII	GATC	2 cut(s)	219, 355
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	3 cut(s)	12, 62, 521
EarI	CTCTTC	3 cut(s)	12, 62, 521
Eco130I	CCWWGG	2 cut(s)	279, 345
Eco47I	GGWCC	2 cut(s)	118, 342
Eco47III	AGCGCT	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	552
EcoT14I	CCWWGG	2 cut(s)	279, 345
ErhI	CCWWGG	2 cut(s)	279, 345
FaeI	CATG	6 cut(s)	37, 146, 283, 342, 472, 588
FatI	CATG	6 cut(s)	33, 142, 279, 338, 468, 584
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	151, 276, 297, 532
FokI	GGATG	2 cut(s)	284, 497
Fsp4HI	GCNGC	4 cut(s)	151, 276, 297, 532
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	151, 276, 297, 532
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	494, 553
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	386
Hin1II	CATG	6 cut(s)	37, 146, 283, 342, 472, 588
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HindIII	AAGCTT	3 cut(s)	87, 305, 538
HinfI	GANTC	3 cut(s)	139, 464, 562
HpaII	CCGG	2 cut(s)	494, 553
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	4 cut(s)	219, 251, 265, 375
Hpy188III	TCNNGA	2 cut(s)	359, 500
Hpy8I	GTNNAC	1 cut(s)	549
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	7 cut(s)	193, 275, 299, 338, 437, 472, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 537
HpyF3I	CTNAG	2 cut(s)	216, 264
Hsp92I	GRCGYC	1 cut(s)	386
Hsp92II	CATG	6 cut(s)	37, 146, 283, 342, 472, 588
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	219, 355
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	2 cut(s)	147, 502
LpnPI	CCDG	8 cut(s)	33, 93, 193, 458, 496, 507, 513, 566
Lsp1109I	GCAGC	4 cut(s)	162, 283, 287, 543
LweI	GCATC	2 cut(s)	111, 262
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	221, 357
MboI	GATC	2 cut(s)	219, 355
MboII	GAAGA	3 cut(s)	29, 79, 538
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	5 cut(s)	154, 173, 259, 430, 594
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	2 cut(s)	462, 539
MnlI	CCTC	5 cut(s)	13, 63, 259, 462, 470
Mox20I	TGGCCA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	204
MspI	CCGG	2 cut(s)	494, 553
MspR9I	CCNGG	3 cut(s)	494, 553, 554
MwoI	GCNNNNNNNGC	2 cut(s)	281, 537
NciI	CCSGG	3 cut(s)	494, 553, 554
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	219, 355
NlaIII	CATG	6 cut(s)	37, 146, 283, 342, 472, 588
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	588
OliI	CACNNNNGTG	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	464, 562
PkrI	GCNGC	4 cut(s)	152, 277, 298, 533
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PshAI	GACNNNNGTC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	2 cut(s)	118, 342
PstNI	CAGNNNCTG	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	189, 515
RsaNI	GTAC	2 cut(s)	188, 514
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	4 cut(s)	151, 276, 297, 532
Sau3AI	GATC	2 cut(s)	219, 355
Sau96I	GGNCC	2 cut(s)	118, 342
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	494, 553, 554
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	8 cut(s)	91, 270, 309, 351, 384, 408, 515, 542
SfaNI	GCATC	2 cut(s)	111, 262
SinI	GGWCC	2 cut(s)	118, 342
SmaI	CCCGGG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SphI	GCATGC	1 cut(s)	588
Sse9I	AATT	5 cut(s)	154, 173, 259, 430, 594
StyD4I	CCNGG	3 cut(s)	492, 551, 552
StyI	CCWWGG	2 cut(s)	279, 345
TaaI	ACNGT	1 cut(s)	518
TasI	AATT	5 cut(s)	154, 173, 259, 430, 594
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	464, 562
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	3 cut(s)	112, 212, 358
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	4 cut(s)	150, 275, 296, 531
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	330
TspMI	CCCGGG	1 cut(s)	552
TspRI	CASTG	3 cut(s)	112, 212, 358
VpaK11BI	GGWCC	2 cut(s)	118, 342
XapI	RAATTY	2 cut(s)	173, 594
XceI	RCATGY	1 cut(s)	588
XmaI	CCCGGG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.