Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

1316425 .. 1317051

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1016500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTTATGATAGCGTGGCAGTCAAGCTTCGAAATGGTAAAGATTTGCATATAAATTTTCCATGGAACAGCTTCACCGTTCAAGAGCTTCATTTCCAAAACCATTACTCAACAGATGCAATAATGAAAATGATTAGGAATGGTTCCTATCTATCCAAATTTGATGCTTTTGTAAGGTCACAAATACAATCTCAAATTGAGGAAATGGGCAAGGGCACCAATAACCCAATAAGAGTGCACGGTGATGGACAAGTATTGTGTAGGCAACTCTTCCAAAAAGAACTGACTCCAAGTGATGTGAGTAAGCTCAACAGGCTTGTGATTCCGAAGAAATATGCCGTCGAGTATTTCCCATGTATTTGTGAGAATGTGGAAGTAAATGGGACTGAGGACATTGAGCTAGTTTTCTATGACAAGCTCATGAGGGTTTGGAAGTTTAGGTACTGCTATTGGAGGAGTAGCCAAAGCTTTGCATTCACAAGGGGTTGGAATAGGTTTGTAAAGGAAAACAATTTGAAGGCAAATGATGTGATCACATTTTATGCATGTGAGAGTGATGATCAAGTAATAAGAGAGGAAGATAGAGAAAGTACTACATTTTGGTTAATTGAGGTAATGGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

209

Amino Acids

24.58

Weight (kDa)

6.11

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	91 - 186	5.3e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AcsI	RAATTY	2 cut(s)	55, 158
AfaI	GTAC	2 cut(s)	443, 592
AgsI	TTSAA	2 cut(s)	83, 517
AluBI	AGCT	8 cut(s)	28, 72, 88, 307, 400, 418, 468, 624
AluI	AGCT	8 cut(s)	28, 72, 88, 307, 400, 418, 468, 624
Alw21I	GWGCWC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	236
ApaLI	GTGCAC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	55, 158
Asp700I	GAANNNNTTC	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	67, 254
AsuII	TTCGAA	1 cut(s)	31
BaeGI	GKGCMC	2 cut(s)	218, 240
BanI	GGYRCC	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	323
BclI	TGATCA	2 cut(s)	531, 559
BfaI	CTAG	2 cut(s)	401, 625
BmcAI	AGTACT	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	145, 217
BmsI	GCATC	2 cut(s)	106, 154
Bpu14I	TTCGAA	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	469
BseSI	GKGCMC	2 cut(s)	218, 240
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	218, 240
Bsp143I	GATC	2 cut(s)	531, 559
Bsp19I	CCATGG	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	145, 217
BspT104I	TTCGAA	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	531, 559
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	79, 242
Bst6I	CTCTTC	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	534, 562
BstMBI	GATC	2 cut(s)	531, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	549
BstSLI	GKGCMC	2 cut(s)	218, 240
BtgI	CCRYGG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	420
Csp6I	GTAC	2 cut(s)	442, 591
CviAII	CATG	4 cut(s)	63, 354, 421, 546
CviQI	GTAC	2 cut(s)	442, 591
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	2 cut(s)	533, 561
DpnII	GATC	2 cut(s)	531, 559
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	62
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	4 cut(s)	66, 357, 424, 549
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	4 cut(s)	62, 353, 420, 545
FbaI	TGATCA	2 cut(s)	531, 559
FspBI	CTAG	2 cut(s)	401, 625
Hin1II	CATG	4 cut(s)	66, 357, 424, 549
HindIII	AAGCTT	2 cut(s)	26, 466
HinfI	GANTC	2 cut(s)	286, 322
HphI	GGTGA	2 cut(s)	67, 254
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	2 cut(s)	83, 421
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	79, 242
HpyCH4V	TGCA	5 cut(s)	49, 119, 238, 473, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	66, 357, 424, 549
Ksp22I	TGATCA	2 cut(s)	531, 559
Kzo9I	GATC	2 cut(s)	531, 559
LpnPI	CCDG	1 cut(s)	298
LweI	GCATC	2 cut(s)	106, 154
MaeI	CTAG	2 cut(s)	401, 625
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	2 cut(s)	533, 561
MboI	GATC	2 cut(s)	531, 559
MboII	GAAGA	3 cut(s)	262, 340, 590
MhlI	GDGCHC	2 cut(s)	218, 240
MluCI	AATT	5 cut(s)	55, 158, 195, 511, 606
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	6 cut(s)	193, 382, 417, 447, 568, 604
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	531, 559
NlaIII	CATG	4 cut(s)	66, 357, 424, 549
NlaIV	GGNNCC	2 cut(s)	145, 217
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	549
NspV	TTCGAA	1 cut(s)	31
PagI	TCATGA	1 cut(s)	420
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	145, 217
RsaI	GTAC	2 cut(s)	443, 592
RsaNI	GTAC	2 cut(s)	442, 591
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	605
Sau3AI	GATC	2 cut(s)	531, 559
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	218, 240
SfaNI	GCATC	2 cut(s)	106, 154
SfuI	TTCGAA	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	5 cut(s)	55, 158, 195, 511, 606
SspMI	CTAG	2 cut(s)	401, 625
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	79, 242
TaqI	TCGA	2 cut(s)	31, 342
TasI	AATT	5 cut(s)	55, 158, 195, 511, 606
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	80, 140
VneI	GTGCAC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	55, 158
XceI	RCATGY	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	401, 625
ZrmI	AGTACT	1 cut(s)	592
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.