Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

56889519 .. 56889923

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20857

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATTCACTTTTGTGAAGTCCAAACTTTTTATTATTACTCATGTAGAATGGTTTTGGAAATGGAAGAGGATTTGTCAAGTACGGTCTCAAACGCAGGCACGACAACAAGGCGGAAGAGGACATATCAAGCAGAAGCTTCTATTTCAAGTATCACTGGTTTCTTGGTTCAAGAGAGTAAGCGCTTGAGTCATGGGAGCAGCAATTTGTCTACCAATGCCAAATTTAAAGGAGTTGTGCTGCAACAAATTGGCCACTGGGGTGCTCAGATCTATGCCATTCACAATAGGGTTTGGCTTGGAACATTCAATTCCGAGGTGGACGCAGCCATGTCTTATGATAGTGCTGCAATCAAGCTTCGCAACGGAGAGTGCCCAAAGGAACTTTGCATGGACCAAGGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

134

Amino Acids

15.07

Weight (kDa)

6.95

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	82
AfeI	AGCGCT	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	147, 170, 307
AleI	CACNNNNGTG	2 cut(s)	12, 258
AluBI	AGCT	2 cut(s)	137, 355
AluI	AGCT	2 cut(s)	137, 355
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	91
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	4 cut(s)	198, 238, 323, 344
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	210, 225, 331, 335
BcoDI	GTCTC	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	184
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	4 cut(s)	199, 239, 324, 345
BlsI	GCNGC	4 cut(s)	200, 240, 325, 346
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmrI	ACTGGG	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	312, 394
Bse1I	ACTGG	2 cut(s)	160, 260
BseDI	CCNNGG	2 cut(s)	312, 394
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	160, 260
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	210, 225, 331, 335
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	265, 374
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	160, 260
BssECI	CCNNGG	2 cut(s)	312, 394
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	60, 110
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	267
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	210, 225, 331, 335
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	153, 253, 400
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	4 cut(s)	42, 191, 328, 388
CviJI	RGCY	5 cut(s)	137, 252, 295, 326, 355
CviKI_1	RGCY	5 cut(s)	137, 252, 295, 326, 355
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DraI	TTTAAA	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	60, 110
EarI	CTCTTC	2 cut(s)	60, 110
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	45, 194, 331, 391
FaiI	YATR	7 cut(s)	43, 124, 192, 273, 329, 336, 389
FatI	CATG	4 cut(s)	41, 190, 327, 387
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	4 cut(s)	199, 239, 324, 345
Fsp4HI	GCNGC	4 cut(s)	199, 239, 324, 345
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	4 cut(s)	199, 239, 324, 345
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	252
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	45, 194, 331, 391
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HindIII	AAGCTT	2 cut(s)	135, 353
HinfI	GANTC	2 cut(s)	4, 187
Hpy166II	GTNNAC	2 cut(s)	210, 319
Hpy188I	TCNGA	2 cut(s)	267, 313
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	210, 319
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	241, 347, 387
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	45, 194, 331, 391
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	3 cut(s)	81, 141, 241
Lsp1109I	GCAGC	4 cut(s)	210, 225, 331, 335
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	2 cut(s)	77, 127
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	2 cut(s)	265, 374
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	4 cut(s)	202, 221, 246, 307
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	61, 111, 307
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	12, 258
Msp20I	TGGCCA	1 cut(s)	252
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	4 cut(s)	45, 194, 331, 391
NmuCI	GTSAC	1 cut(s)	398
OliI	CACNNNNGTG	2 cut(s)	12, 258
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	200, 240, 325, 346
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PshAI	GACNNNNGTC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	2 cut(s)	12, 258
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	4 cut(s)	199, 239, 324, 345
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	265, 374
SetI	ASST	4 cut(s)	139, 318, 357, 400
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	12, 258
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	4 cut(s)	202, 221, 246, 307
SsiI	CCGC	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	4 cut(s)	202, 221, 246, 307
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	160, 260
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	4 cut(s)	198, 238, 323, 344
Tsp45I	GTSAC	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	160, 260
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.