Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003878.1

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

127911 .. 128999

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003878.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atggaagaggatttgtcaagcatggtatcaaatgcaggcacaacaaggcagaagaggacatatcaagcagaagcttctgtttcaagcatcactggtttcttggtccaagagagtaagcgcttgagtcatgggagcagcaatttgtctgccaataccaaatttaaaggagttgtactgcaacaaaatggccactggggtgctcagatctatgccaatcacaatagggtttggcttggaacattcaattctgaggtggatgcagccatggcttatgatagtgctgcaatcaagcttcgcaacggagagtgccaaaggaactttgcatggaccaaggtcactgatcaagagccatactttcagaatctctatagccaagaagctgttctcaacatgatcaaggacgggacttaccaggctaggtttttagaatttcgcatgtctcaccaggcagcagaaagtatgcaaaaaataggaatggccgagtgtaactcagctagggtgcaacaaagcaaaagagatatcttgcacaaacaactcttccaaaaagagctgacgccaagcgatgttggtaagctgaacagacttgtcatacccaaaaattatgcaactaaatacttccctcgtattgatgaatccatgcaggacgggttggatgacaacccggctcctgatgtgcagttgtcattttatgatgaaaacatgaggccatggaagttcaggtactgttattggaagagcagccaaagctttgtgttcacccggggttggaatcggtttgtaaaggagagtcttttgaaagccaatgacattatcaggttctatgagtgccacattagggaaggagacaaggaggccaagtcattctacatgattaaaatcgaccgggctgaaagttctgatgttattgttgaaaatgctggcctgtgtgtttcccccgcccttacccccttgcatgccaagaaatttggagaggagaaagatgacataaagacgcaaattgcagaggttattgatgaaacgccacaagttaacggtgataataaaagaattaggctctttggtgtctgtatggtcgtaggtgaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

362

Amino Acids

41.45

Weight (kDa)

7.6

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	936
AcoI	YGGCCR	2 cut(s)	187, 477
AcsI	RAATTY	3 cut(s)	158, 428, 962
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	2 cut(s)	174, 722
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	765, 835
AgsI	TTSAA	4 cut(s)	84, 244, 796, 911
AjnI	CCWGG	2 cut(s)	411, 444
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	7 cut(s)	74, 292, 380, 494, 550, 574, 747
AluI	AGCT	7 cut(s)	74, 292, 380, 494, 550, 574, 747
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	444, 837
AlwNI	CAGNNNCTG	1 cut(s)	723
Ama87I	CYCGRG	1 cut(s)	759
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	5 cut(s)	187, 477, 704, 852, 919
ApeKI	GCWGC	5 cut(s)	135, 260, 281, 449, 738
ApoI	RAATTY	3 cut(s)	158, 428, 962
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	103, 327
AsuC2I	CCSGG	4 cut(s)	662, 760, 761, 884
AsuHPI	GGTGA	3 cut(s)	434, 748, 1046
AvaI	CYCGRG	1 cut(s)	759
AvaII	GGWCC	2 cut(s)	103, 327
BalI	TGGCCA	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	5 cut(s)	147, 268, 272, 461, 750
BciT130I	CCWGG	2 cut(s)	413, 446
BclI	TGATCA	2 cut(s)	340, 393
BcnI	CCSGG	4 cut(s)	662, 760, 761, 884
BcoDI	GTCTC	2 cut(s)	444, 837
BfaI	CTAG	2 cut(s)	417, 495
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	121
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	5 cut(s)	136, 261, 282, 450, 739
BlsI	GCNGC	5 cut(s)	137, 262, 283, 451, 740
Bme1390I	CCNGG	6 cut(s)	413, 446, 662, 760, 761, 884
Bme18I	GGWCC	2 cut(s)	103, 327
BmeT110I	CYCGRG	1 cut(s)	759
BmgT120I	GGNCC	2 cut(s)	103, 327
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	6 cut(s)	413, 446, 662, 760, 761, 884
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	96, 247
BmuI	ACTGGG	1 cut(s)	202
BoxI	GACNNNNGTC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	4 cut(s)	662, 760, 761, 884
BsaBI	GATNNNNATC	1 cut(s)	875
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	5 cut(s)	264, 330, 707, 759, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	765, 835
Bse1I	ACTGG	2 cut(s)	97, 197
Bse8I	GATNNNNATC	1 cut(s)	875
BseBI	CCWGG	2 cut(s)	413, 446
BseDI	CCNNGG	5 cut(s)	264, 330, 707, 759, 760
BseGI	GGATG	2 cut(s)	262, 658
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	2 cut(s)	765, 835
BseMII	CTCAG	3 cut(s)	215, 240, 504
BseNI	ACTGG	2 cut(s)	97, 197
BseRI	GAGGAG	1 cut(s)	986
BseXI	GCAGC	5 cut(s)	147, 268, 272, 461, 750
BsgI	GTGCAG	1 cut(s)	695
Bsh1285I	CGRYCG	1 cut(s)	883
BshFI	GGCC	5 cut(s)	189, 479, 706, 854, 921
BsiEI	CGRYCG	1 cut(s)	883
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	759
BsiSI	CCGG	3 cut(s)	662, 760, 883
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	2 cut(s)	765, 835
BsmAI	GTCTC	2 cut(s)	444, 837
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	5 cut(s)	189, 479, 706, 854, 921
BsoBI	CYCGRG	1 cut(s)	759
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	204, 340, 393
Bsp19I	CCATGG	2 cut(s)	264, 707
BspACI	CCGC	1 cut(s)	936
BspANI	GGCC	5 cut(s)	189, 479, 706, 854, 921
BspCNI	CTCAG	3 cut(s)	214, 241, 503
BspLI	GGNNCC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	728
BsrI	ACTGG	2 cut(s)	97, 197
BssECI	CCNNGG	5 cut(s)	264, 330, 707, 759, 760
BssMI	GATC	3 cut(s)	204, 340, 393
BssNI	GRCGYC	1 cut(s)	554
BssT1I	CCWWGG	3 cut(s)	264, 330, 707
Bst2UI	CCWGG	2 cut(s)	413, 446
Bst4CI	ACNGT	2 cut(s)	725, 1034
Bst6I	CTCTTC	3 cut(s)	47, 542, 728
BstACI	GRCGYC	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	37, 919, 954
BstDEI	CTNAG	3 cut(s)	201, 249, 490
BstDSI	CCRYGG	2 cut(s)	264, 707
BstF5I	GGATG	2 cut(s)	262, 658
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	207, 343, 396
BstMAI	GTCTC	2 cut(s)	444, 837
BstMBI	GATC	3 cut(s)	204, 340, 393
BstMCI	CGRYCG	1 cut(s)	883
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 744
BstNI	CCWGG	2 cut(s)	413, 446
BstNSI	RCATGY	2 cut(s)	439, 956
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	6 cut(s)	411, 444, 660, 758, 759, 882
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	5 cut(s)	147, 268, 272, 461, 750
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	5 cut(s)	189, 479, 706, 854, 921
BtgI	CCRYGG	2 cut(s)	264, 707
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	262, 658
BtsIMutI	CAGTG	3 cut(s)	90, 190, 336
Cac8I	GCNNGC	3 cut(s)	37, 919, 954
CaiI	CAGNNNCTG	1 cut(s)	723
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	103, 327
Cfr9I	CCCGGG	1 cut(s)	759
CseI	GACGC	2 cut(s)	562, 1000
Csp6I	GTAC	2 cut(s)	173, 721
CviQI	GTAC	2 cut(s)	173, 721
DdeI	CTNAG	3 cut(s)	201, 249, 490
DpnI	GATC	3 cut(s)	206, 342, 395
DpnII	GATC	3 cut(s)	204, 340, 393
DraI	TTTAAA	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	187, 477
Eam1104I	CTCTTC	3 cut(s)	47, 542, 728
EarI	CTCTTC	3 cut(s)	47, 542, 728
Eco130I	CCWWGG	3 cut(s)	264, 330, 707
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	103, 327
Eco47III	AGCGCT	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	759
EcoRII	CCWGG	2 cut(s)	411, 444
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	3 cut(s)	264, 330, 707
ErhI	CCWWGG	3 cut(s)	264, 330, 707
FaqI	GGGAC	1 cut(s)	418
FauI	CCCGC	1 cut(s)	943
FbaI	TGATCA	2 cut(s)	340, 393
Fnu4HI	GCNGC	5 cut(s)	136, 261, 282, 450, 739
FokI	GGATG	2 cut(s)	269, 665
Fsp4HI	GCNGC	5 cut(s)	136, 261, 282, 450, 739
FspBI	CTAG	2 cut(s)	417, 495
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	5 cut(s)	136, 261, 282, 450, 739
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	5 cut(s)	189, 479, 706, 854, 921
HapII	CCGG	3 cut(s)	662, 760, 883
HgaI	GACGC	2 cut(s)	562, 1000
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	554
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	3 cut(s)	72, 290, 745
HinfI	GANTC	5 cut(s)	124, 361, 632, 769, 787
HpaI	GTTAAC	1 cut(s)	1030
HpaII	CCGG	3 cut(s)	662, 760, 883
HphI	GGTGA	3 cut(s)	434, 748, 1046
Hpy166II	GTNNAC	2 cut(s)	756, 1030
Hpy188I	TCNGA	4 cut(s)	204, 250, 360, 898
Hpy188III	TCNNGA	2 cut(s)	344, 668
Hpy8I	GTNNAC	2 cut(s)	756, 1030
HpyAV	CCTTC	1 cut(s)	833
HpyCH4III	ACNGT	2 cut(s)	725, 1034
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 744
HpyF3I	CTNAG	3 cut(s)	201, 249, 490
Hsp92I	GRCGYC	1 cut(s)	554
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	2 cut(s)	340, 393
KspAI	GTTAAC	1 cut(s)	1030
Kzo9I	GATC	3 cut(s)	204, 340, 393
LguI	GCTCTTC	1 cut(s)	728
LmnI	GCTCC	2 cut(s)	132, 670
Lsp1109I	GCAGC	5 cut(s)	147, 268, 272, 461, 750
LweI	GCATC	2 cut(s)	96, 247
MaeI	CTAG	2 cut(s)	417, 495
MaeIII	GTNAC	2 cut(s)	334, 485
MalI	GATC	3 cut(s)	206, 342, 395
MboI	GATC	3 cut(s)	204, 340, 393
MboII	GAAGA	4 cut(s)	17, 64, 529, 745
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	9 cut(s)	139, 158, 244, 428, 598, 962, 996, 1047, 1084
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	133, 796
MmeI	TCCRAC	2 cut(s)	630, 746
MnlI	CCTC	7 cut(s)	48, 244, 630, 696, 844, 964, 997
Mox20I	TGGCCA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	4 cut(s)	162, 873, 1029, 1087
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	189
MspI	CCGG	3 cut(s)	662, 760, 883
MspR9I	CCNGG	6 cut(s)	413, 446, 662, 760, 761, 884
MvaI	CCWGG	2 cut(s)	413, 446
MwoI	GCNNNNNNNGC	2 cut(s)	266, 744
NciI	CCSGG	4 cut(s)	662, 760, 761, 884
NcoI	CCATGG	2 cut(s)	264, 707
NdeII	GATC	3 cut(s)	204, 340, 393
NlaIV	GGNNCC	1 cut(s)	666
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	2 cut(s)	439, 956
OliI	CACNNNNGTG	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	956
PciSI	GCTCTTC	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	361, 632, 769
PkrI	GCNGC	5 cut(s)	137, 262, 283, 451, 740
PleI	GAGTC	2 cut(s)	132, 795
PpsI	GAGTC	2 cut(s)	132, 795
PshAI	GACNNNNGTC	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	411, 444
PspGI	CCWGG	2 cut(s)	411, 444
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	2 cut(s)	103, 327
PstNI	CAGNNNCTG	1 cut(s)	723
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	2 cut(s)	174, 722
RsaNI	GTAC	2 cut(s)	173, 721
RseI	CAYNNNNRTG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	728
SaqAI	TTAA	4 cut(s)	162, 873, 1029, 1087
SatI	GCNGC	5 cut(s)	136, 261, 282, 450, 739
Sau3AI	GATC	3 cut(s)	204, 340, 393
Sau96I	GGNCC	2 cut(s)	103, 327
SchI	GAGTC	2 cut(s)	133, 796
ScrFI	CCNGG	6 cut(s)	413, 446, 662, 760, 761, 884
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	2 cut(s)	96, 247
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	2 cut(s)	103, 327
SmaI	CCCGGG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	9 cut(s)	139, 158, 244, 428, 598, 962, 996, 1047, 1084
SsiI	CCGC	1 cut(s)	936
SspMI	CTAG	2 cut(s)	417, 495
StyD4I	CCNGG	6 cut(s)	411, 444, 660, 758, 759, 882
StyI	CCWWGG	3 cut(s)	264, 330, 707
TaaI	ACNGT	2 cut(s)	725, 1034
TaqI	TCGA	1 cut(s)	879
TasI	AATT	9 cut(s)	139, 158, 244, 428, 598, 962, 996, 1047, 1084
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	361, 632, 769
Tru1I	TTAA	4 cut(s)	162, 873, 1029, 1087
Tru9I	TTAA	4 cut(s)	162, 873, 1029, 1087
TscAI	CASTG	3 cut(s)	97, 197, 343
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	135, 260, 281, 449, 738
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	645, 708, 1029
TspGWI	ACGGA	1 cut(s)	315
TspMI	CCCGGG	1 cut(s)	759
TspRI	CASTG	3 cut(s)	97, 197, 343
VpaK11BI	GGWCC	2 cut(s)	103, 327
XapI	RAATTY	3 cut(s)	158, 428, 962
XceI	RCATGY	2 cut(s)	439, 956
XmaI	CCCGGG	1 cut(s)	759
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	417, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.