Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

1390561 .. 1391664

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1017200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCAATATTGTGCTTATCTTTTCCCTTGAGATCATTCACAATGGCAGAAGATGCATCAATCATGATCTCAAGTGCCCAAAGAAATGTGGGTTTGGAGACTTCGGATTCAAACGAAACCGATTTTGCGCTGCTACATCAGAATAAGCGCGCGAGGCACGACAATGATGTCTCATTTGCAAAGTTCAAAGGGGTTGTGCCACAACAAAATGGTCACTGGGGTGCACAAATATATGCAAACCACCAAAGAATTTGGCTTGGCACCTTCAAATCTGAGAAGGAAGCTGCCATGGCTTATGATAGTGCGGCAGTCAAGCTTCGAAATGGTAAAGATTTGCATAGAAATTTTCCTTGGACCAACTTCACCATTCAAGAGCCTGATTTCCAAAACCATTACACAACAGAGGCAATAATTAAAATGATTAGGGATGGTTCCTATCCATCCAAATTTGATGCCTTTATGAGGTCCCAAGCACAATCTCAAATTGAGGAAATGAGCAAGGGCACCAACCCAATAAGAGTGCATGGCGATGGACAAGTATTGTGTCGACAACTCTTCCAAAAAGAACTTACTCCGAGTGATGTGGGTAAGCTCAATAGGCTTGTGATTCCGAAGAAATACGCGGTCGAGTATTTCCCTTGTATTTGTGAGAATGCGGAAGAAAATGTGACTGAGGACATTGAGCTAGTTTTCTATGACAAGCTCATGAGGGTTTGGAAGTTTAGGTATTGCTATTGGAGGAGTAGCCAAAGCTTTGTGTTCACAAGGGGTTGGAATAGGTTTGTGAAGGAAAACAATTTGAAGGCAAATGATGTGATCACATTTTATGCATGTGAGAGTGATGGTCAAGTGATAAGAGAGGAAGATAGAGAAAGTACTACATTTTGGTTAATTGATGTAATGCACAGTGAAGGTGAAAGCAAGAGATCATGTTTTGTTGAGGAGGCCAGTGAGTGTAAGGATTTGCAGGTAAAATTGGAACTAAATTTGGGGGAATGTAGCAGCTCCAAGTTTCAAAAAGGTGAAGGTAAATATAGTGAAGATCACAGGGCATCCATAGCTGAGGAAAAAGGAATTAGGCTATTTGGTGTGAATATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

368

Amino Acids

42.38

Weight (kDa)

6.05

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	61 - 108	4.6e-06	AP2 domain
B3	PF02362	186 - 281	1e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	958
AccB1I	GGYRCC	2 cut(s)	260, 503
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	3 cut(s)	150, 152, 623
AciI	CCGC	3 cut(s)	305, 623, 656
AcsI	RAATTY	4 cut(s)	249, 343, 446, 985
AfaI	GTAC	1 cut(s)	877
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	6 cut(s)	111, 187, 268, 371, 802, 1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	8 cut(s)	284, 316, 592, 685, 703, 753, 1005, 1061
AluI	AGCT	8 cut(s)	284, 316, 592, 685, 703, 753, 1005, 1061
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	92, 175
Alw44I	GTGCAC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	945
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	130, 284, 1002
ApoI	RAATTY	4 cut(s)	249, 343, 446, 985
AseI	ATTAAT	1 cut(s)	1098
AspLEI	GCGC	3 cut(s)	130, 150, 152
AspS9I	GGNCC	2 cut(s)	354, 465
AsuHPI	GGTGA	3 cut(s)	355, 926, 1034
AsuII	TTCGAA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	354, 465
BaeGI	GKGCMC	3 cut(s)	79, 226, 506
BanI	GGYRCC	2 cut(s)	260, 503
Bbv12I	GWGCWC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	1062
BbvI	GCAGC	3 cut(s)	117, 271, 1014
BccI	CCATC	4 cut(s)	422, 448, 524, 836
BclI	TGATCA	1 cut(s)	816
BcoDI	GTCTC	2 cut(s)	92, 175
BfaI	CTAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	958
BisI	GCNGC	4 cut(s)	131, 285, 306, 1003
BlsI	GCNGC	4 cut(s)	132, 286, 307, 1004
BmcAI	AGTACT	1 cut(s)	877
Bme18I	GGWCC	2 cut(s)	354, 465
BmgT120I	GGNCC	2 cut(s)	354, 465
BmiI	GGNNCC	4 cut(s)	262, 433, 467, 505
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	4 cut(s)	43, 65, 442, 1061
BmuI	ACTGGG	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	1062
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	2 cut(s)	49, 55
BsaJI	CCNNGG	2 cut(s)	288, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	221, 948
BseDI	CCNNGG	2 cut(s)	288, 350
BseGI	GGATG	3 cut(s)	433, 440, 1052
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	264, 663, 1053
BseNI	ACTGG	2 cut(s)	221, 948
BsePI	GCGCGC	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	754, 956
BseSI	GKGCMC	3 cut(s)	79, 226, 506
BseXI	GCAGC	3 cut(s)	117, 271, 1014
Bsh1236I	CGCG	3 cut(s)	150, 152, 623
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	947
BshNI	GGYRCC	2 cut(s)	260, 503
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	2 cut(s)	92, 175
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	947
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	3 cut(s)	79, 226, 506
Bsp143I	GATC	5 cut(s)	32, 66, 816, 926, 1042
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	3 cut(s)	305, 623, 656
BspANI	GGCC	1 cut(s)	947
BspCNI	CTCAG	3 cut(s)	265, 664, 1054
BspFNI	CGCG	3 cut(s)	150, 152, 623
BspHI	TCATGA	2 cut(s)	63, 705
BspLI	GGNNCC	4 cut(s)	262, 433, 467, 505
BspMI	ACCTGC	1 cut(s)	958
BspT104I	TTCGAA	1 cut(s)	319
BspT107I	GGYRCC	2 cut(s)	260, 503
BsrI	ACTGG	2 cut(s)	221, 948
BssECI	CCNNGG	2 cut(s)	288, 350
BssHII	GCGCGC	1 cut(s)	148
BssMI	GATC	5 cut(s)	32, 66, 816, 926, 1042
BssT1I	CCWWGG	2 cut(s)	288, 350
Bst4CI	ACNGT	1 cut(s)	908
Bst6I	CTCTTC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	273, 672, 1062
BstDSI	CCRYGG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	460
BstF5I	GGATG	3 cut(s)	433, 440, 1052
BstFNI	CGCG	3 cut(s)	150, 152, 623
BstHHI	GCGC	3 cut(s)	130, 150, 152
BstKTI	GATC	5 cut(s)	35, 69, 819, 929, 1045
BstMAI	GTCTC	2 cut(s)	92, 175
BstMBI	GATC	5 cut(s)	32, 66, 816, 926, 1042
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 154, 290, 598, 1058
BstNSI	RCATGY	1 cut(s)	834
BstSLI	GKGCMC	3 cut(s)	79, 226, 506
BstUI	CGCG	3 cut(s)	150, 152, 623
BstV1I	GCAGC	3 cut(s)	117, 271, 1014
BsuRI	GGCC	1 cut(s)	947
BtgI	CCRYGG	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	543
BtsCI	GGATG	3 cut(s)	433, 440, 1052
BtsIMutI	CAGTG	3 cut(s)	214, 913, 955
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	2 cut(s)	63, 705
CfoI	GCGC	3 cut(s)	130, 150, 152
Cfr13I	GGNCC	2 cut(s)	354, 465
Csp6I	GTAC	1 cut(s)	876
CviAII	CATG	6 cut(s)	64, 289, 524, 706, 831, 930
CviQI	GTAC	1 cut(s)	876
DdeI	CTNAG	3 cut(s)	273, 672, 1062
DpnI	GATC	5 cut(s)	34, 68, 818, 928, 1044
DpnII	GATC	5 cut(s)	32, 66, 816, 926, 1042
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	288, 350
Eco47I	GGWCC	2 cut(s)	354, 465
EcoNI	CCTNNNNNAGG	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	288, 350
EcoT22I	ATGCAT	2 cut(s)	58, 832
ErhI	CCWWGG	2 cut(s)	288, 350
FaeI	CATG	6 cut(s)	67, 292, 527, 709, 834, 933
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	6 cut(s)	63, 288, 523, 705, 830, 929
FbaI	TGATCA	1 cut(s)	816
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	4 cut(s)	131, 285, 306, 1003
FokI	GGATG	3 cut(s)	427, 440, 1039
Fsp4HI	GCNGC	4 cut(s)	131, 285, 306, 1003
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	3 cut(s)	129, 149, 151
GluI	GCNGC	4 cut(s)	131, 285, 306, 1003
HaeIII	GGCC	1 cut(s)	947
HhaI	GCGC	3 cut(s)	130, 150, 152
Hin1II	CATG	6 cut(s)	67, 292, 527, 709, 834, 933
Hin6I	GCGC	3 cut(s)	128, 148, 150
HinP1I	GCGC	3 cut(s)	128, 148, 150
HincII	GTYRAC	1 cut(s)	548
HindII	GTYRAC	1 cut(s)	548
HindIII	AAGCTT	2 cut(s)	314, 751
HinfI	GANTC	2 cut(s)	107, 607
HphI	GGTGA	3 cut(s)	355, 926, 1034
Hpy166II	GTNNAC	3 cut(s)	224, 548, 762
Hpy188I	TCNGA	5 cut(s)	106, 141, 274, 576, 612
Hpy188III	TCNNGA	3 cut(s)	64, 371, 706
Hpy8I	GTNNAC	3 cut(s)	224, 548, 762
HpyAV	CCTTC	6 cut(s)	271, 274, 781, 796, 905, 1019
HpyCH4III	ACNGT	1 cut(s)	908
HpyCH4V	TGCA	9 cut(s)	56, 179, 224, 236, 337, 523, 830, 904, 967
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 154, 290, 598, 1058
HpyF3I	CTNAG	3 cut(s)	273, 672, 1062
Hsp92II	CATG	6 cut(s)	67, 292, 527, 709, 834, 933
HspAI	GCGC	3 cut(s)	128, 148, 150
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	5 cut(s)	32, 66, 816, 926, 1042
LmnI	GCTCC	1 cut(s)	1010
LpnPI	CCDG	5 cut(s)	202, 390, 953, 961, 1033
Lsp1109I	GCAGC	3 cut(s)	117, 271, 1014
LweI	GCATC	4 cut(s)	43, 65, 442, 1061
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	212, 667
MalI	GATC	5 cut(s)	34, 68, 818, 928, 1044
MboI	GATC	5 cut(s)	32, 66, 816, 926, 1042
MboII	GAAGA	6 cut(s)	62, 547, 625, 671, 875, 1052
MhlI	GDGCHC	3 cut(s)	79, 226, 506
MmeI	TCCRAC	1 cut(s)	752
Mph1103I	ATGCAT	2 cut(s)	58, 832
MseI	TTAA	4 cut(s)	414, 890, 1098, 1102
MslI	CAYNNNNRTG	3 cut(s)	162, 219, 528
Mva1269I	GAATGC	1 cut(s)	658
MvnI	CGCG	3 cut(s)	150, 152, 623
MwoI	GCNNNNNNNGC	5 cut(s)	53, 154, 290, 598, 1058
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	5 cut(s)	32, 66, 816, 926, 1042
NlaIII	CATG	6 cut(s)	67, 292, 527, 709, 834, 933
NlaIV	GGNNCC	4 cut(s)	262, 433, 467, 505
NmuCI	GTSAC	2 cut(s)	212, 667
NsiI	ATGCAT	2 cut(s)	58, 832
NspI	RCATGY	1 cut(s)	834
NspV	TTCGAA	1 cut(s)	319
OliI	CACNNNNGTG	1 cut(s)	219
PacI	TTAATTAA	1 cut(s)	1102
PagI	TCATGA	2 cut(s)	63, 705
PauI	GCGCGC	1 cut(s)	148
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	107, 607
PkrI	GCNGC	4 cut(s)	132, 286, 307, 1004
PpuMI	RGGWCCY	1 cut(s)	465
PshBI	ATTAAT	1 cut(s)	1098
Psp5II	RGGWCCY	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	262, 433, 467, 505
PspPI	GGNCC	2 cut(s)	354, 465
PspPPI	RGGWCCY	1 cut(s)	465
PteI	GCGCGC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	877
RsaNI	GTAC	1 cut(s)	876
RseI	CAYNNNNRTG	3 cut(s)	162, 219, 528
SalI	GTCGAC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	414, 890, 1098, 1102
SatI	GCNGC	4 cut(s)	131, 285, 306, 1003
Sau3AI	GATC	5 cut(s)	32, 66, 816, 926, 1042
Sau96I	GGNCC	2 cut(s)	354, 465
ScaI	AGTACT	1 cut(s)	877
SduI	GDGCHC	3 cut(s)	79, 226, 506
SfaNI	GCATC	4 cut(s)	43, 65, 442, 1061
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	2 cut(s)	354, 465
SmiMI	CAYNNNNRTG	3 cut(s)	162, 219, 528
SmlI	CTYRAG	2 cut(s)	28, 70
SmoI	CTYRAG	2 cut(s)	28, 70
SsiI	CCGC	3 cut(s)	305, 623, 656
SspI	AATATT	2 cut(s)	9, 1096
SspMI	CTAG	1 cut(s)	686
StyI	CCWWGG	2 cut(s)	288, 350
TaaI	ACNGT	1 cut(s)	908
TaqI	TCGA	3 cut(s)	319, 547, 627
TatI	WGTACW	1 cut(s)	875
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	107, 607
Tru1I	TTAA	4 cut(s)	414, 890, 1098, 1102
Tru9I	TTAA	4 cut(s)	414, 890, 1098, 1102
TscAI	CASTG	3 cut(s)	221, 913, 955
TseFI	GTSAC	2 cut(s)	212, 667
TseI	GCWGC	3 cut(s)	130, 284, 1002
Tsp45I	GTSAC	2 cut(s)	212, 667
TspRI	CASTG	3 cut(s)	221, 913, 955
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	2 cut(s)	354, 465
VspI	ATTAAT	1 cut(s)	1098
XagI	CCTNNNNNAGG	1 cut(s)	460
XapI	RAATTY	4 cut(s)	249, 343, 446, 985
XceI	RCATGY	1 cut(s)	834
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	877
Zsp2I	ATGCAT	2 cut(s)	58, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.