Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Reverse (-)

36832951 .. 36833988

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCAGATGAAGCATCAGGCATGATTAATTCAGGTGCCCTTGAAAACAATAATAGAGTTGCAATGCTGGGAGAAACATCAGATTCAAACGACATCAATTTTGAACTTCGCCCAAATAAGCGTTTGAGGCATGACAACAATGATGTCTCATTTGCTGCAAGATTCAAAGGGGTGGTGCCACAACAAAATGGTCATTGGGGTGCACAGATATACGCAAACCACCAAAGAGTTTGGCTTGGCACATTCAAATCAGAAAACGAAGCGGCTATGGCTTATGATAGTGCAGCAATCAAGCTTCGAAAAGGTAACGACTCGCATCGAAATTTCCCTTGGACCAACCTCACCATTCAAGAGCCTGATTTCCAAAACCATCTCACCACAGAAGAAGTAATTAAAATGATTAGGGACGGGTCCTATCCATCCAAATTTGATGCCTTCGTTCGGTCACAAACACAAGCACATAGTGAGGAAGGTGGTAAGGGTACTCCAAACCAAATTAGGGTACATGGAAATGGACAAGTACTGTGTAGGCAACTATTTCAAAAGGAATTGACGCCAAGTGATGTGGGTAAGCTTAATAGGCTTGTGATACCGAAGAAATATGCCGTTAAGTATTTTCCTTGTATTTCTGAGACAGCAGAAGAAAATGGGGTTGACGATGTTGAGCTAGTTTTCTATGATAAGGTCATGAGGGCATGGAAGTTTAGGTATTGCTATTGGAAGAGTAGCCAAAGCTTTGTGTTCACCAGGGGTTGGAATCGGTTTGTGAAGGAAAACAACTTGAAGGCAAATGATGTGATCACATTCTATGCTTGTGAGAGCGCTGAGTTGGTAAGAGATGAAAGTGGAGAAGTTACTACTACGTTTTCTTTGATTGATGTAATGCATAGTGAGGGAGACAACAACAAATGTTTAGTACAGGAGGAGGGAAAACTGGAACTAAATCTGGGGGGATATAGCAGCTACAAATTGCAAGAAAATAAGGCATCTATGGAGCAGGAAAAAGAAGTAAGGCTCTTTGGCGTGAATATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

346

Amino Acids

39.37

Weight (kDa)

6.12

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	55 - 101	1.5e-06	AP2 domain
B3	PF02362	180 - 273	7.8e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 175
AccB7I	CCANNNNNTGG	1 cut(s)	753
AciI	CCGC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	322, 425
AcyI	GRCGYC	1 cut(s)	554
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	4 cut(s)	484, 504, 522, 918
AfeI	AGCGCT	1 cut(s)	823
AfiI	CCNNNNNNNGG	3 cut(s)	441, 499, 753
AgsI	TTSAA	8 cut(s)	44, 87, 104, 166, 247, 350, 542, 784
AjnI	CCWGG	1 cut(s)	746
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AluBI	AGCT	5 cut(s)	295, 574, 667, 735, 963
AluI	AGCT	5 cut(s)	295, 574, 667, 735, 963
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	3 cut(s)	151, 626, 891
Alw44I	GTGCAC	1 cut(s)	201
Aor51HI	AGCGCT	1 cut(s)	823
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	155, 284, 960
ApoI	RAATTY	2 cut(s)	322, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AseI	ATTAAT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	2 cut(s)	333, 411
AsuHPI	GGTGA	3 cut(s)	334, 367, 736
AsuII	TTCGAA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	333, 411
BaeGI	GKGCMC	2 cut(s)	40, 205
BanI	GGYRCC	2 cut(s)	35, 175
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	142, 296, 972
BccI	CCATC	2 cut(s)	378, 427
BceAI	ACGGC	1 cut(s)	590
BciT130I	CCWGG	1 cut(s)	748
BclI	TGATCA	1 cut(s)	798
BcoDI	GTCTC	3 cut(s)	151, 626, 891
BfaI	CTAG	1 cut(s)	668
BfoI	RGCGCY	1 cut(s)	825
BisI	GCNGC	4 cut(s)	156, 264, 285, 961
BlsI	GCNGC	4 cut(s)	157, 265, 286, 962
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	748
Bme18I	GGWCC	2 cut(s)	333, 411
BmgT120I	GGNCC	2 cut(s)	333, 411
BmiI	GGNNCC	3 cut(s)	37, 177, 412
BmrFI	CCNGG	1 cut(s)	748
BmsI	GCATC	4 cut(s)	23, 325, 421, 995
Bpu14I	TTCGAA	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	329, 747
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 499, 753
Bse1I	ACTGG	1 cut(s)	939
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	748
BseDI	CCNNGG	2 cut(s)	329, 747
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	3 cut(s)	441, 499, 753
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	621, 816
BseNI	ACTGG	1 cut(s)	939
BseRI	GAGGAG	1 cut(s)	938
BseSI	GKGCMC	2 cut(s)	40, 205
BseXI	GCAGC	3 cut(s)	142, 296, 972
BseYI	CCCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	303
BshNI	GGYRCC	2 cut(s)	35, 175
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	441, 499, 753
BsmAI	GTCTC	3 cut(s)	151, 626, 891
BsmFI	GGGAC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	40, 205
Bsp143I	GATC	1 cut(s)	798
BspACI	CCGC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	622, 817
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	3 cut(s)	37, 177, 412
BspT104I	TTCGAA	1 cut(s)	298
BspT107I	GGYRCC	2 cut(s)	35, 175
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	939
BssECI	CCNNGG	2 cut(s)	329, 747
BssMI	GATC	1 cut(s)	798
BssNI	GRCGYC	1 cut(s)	554
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	748
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	1 cut(s)	716
BstACI	GRCGYC	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	630, 825
BstF5I	GGATG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	1 cut(s)	801
BstMAI	GTCTC	3 cut(s)	151, 626, 891
BstMBI	GATC	1 cut(s)	798
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 127, 269, 580
BstNI	CCWGG	1 cut(s)	748
BstSCI	CCNGG	1 cut(s)	746
BstSLI	GKGCMC	2 cut(s)	40, 205
BstV1I	GCAGC	3 cut(s)	142, 296, 972
BtsCI	GGATG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	687
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	2 cut(s)	333, 411
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	4 cut(s)	483, 503, 521, 917
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	5 cut(s)	22, 131, 506, 688, 696
CviQI	GTAC	4 cut(s)	483, 503, 521, 917
DdeI	CTNAG	2 cut(s)	630, 825
DpnI	GATC	1 cut(s)	800
DpnII	GATC	1 cut(s)	798
DraIII	CACNNNGTG	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	333, 411
Eco47III	AGCGCT	1 cut(s)	823
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	329
EcoT22I	ATGCAT	1 cut(s)	888
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	5 cut(s)	25, 134, 509, 691, 699
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	5 cut(s)	21, 130, 505, 687, 695
FbaI	TGATCA	1 cut(s)	798
Fnu4HI	GCNGC	4 cut(s)	156, 264, 285, 961
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	4 cut(s)	156, 264, 285, 961
FspBI	CTAG	1 cut(s)	668
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	4 cut(s)	156, 264, 285, 961
GsaI	CCCAGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	825
HgaI	GACGC	1 cut(s)	562
HhaI	GCGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	5 cut(s)	25, 134, 509, 691, 699
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	3 cut(s)	293, 572, 733
HinfI	GANTC	4 cut(s)	83, 162, 311, 757
HphI	GGTGA	3 cut(s)	334, 367, 736
Hpy166II	GTNNAC	3 cut(s)	203, 655, 744
Hpy188I	TCNGA	3 cut(s)	82, 253, 631
Hpy188III	TCNNGA	2 cut(s)	350, 688
Hpy8I	GTNNAC	3 cut(s)	203, 655, 744
HpyAV	CCTTC	4 cut(s)	445, 464, 763, 778
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4IV	ACGT	1 cut(s)	863
HpyCH4V	TGCA	6 cut(s)	62, 158, 203, 284, 886, 973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 127, 269, 580
HpyF3I	CTNAG	2 cut(s)	630, 825
HpySE526I	ACGT	1 cut(s)	863
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	5 cut(s)	25, 134, 509, 691, 699
HspAI	GCGC	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	1 cut(s)	798
LmnI	GCTCC	1 cut(s)	994
Lsp1109I	GCAGC	3 cut(s)	142, 296, 972
LweI	GCATC	4 cut(s)	23, 325, 421, 995
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	1 cut(s)	863
MaeIII	GTNAC	3 cut(s)	305, 444, 853
MalI	GATC	1 cut(s)	800
MboI	GATC	1 cut(s)	798
MboII	GAAGA	4 cut(s)	395, 607, 653, 733
MhlI	GDGCHC	2 cut(s)	40, 205
MluCI	AATT	8 cut(s)	28, 97, 322, 390, 425, 495, 548, 968
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	7 cut(s)	120, 350, 460, 684, 886, 916, 919
Mph1103I	ATGCAT	1 cut(s)	888
MseI	TTAA	4 cut(s)	27, 393, 576, 609
MslI	CAYNNNNRTG	2 cut(s)	198, 510
MspR9I	CCNGG	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	748
MwoI	GCNNNNNNNGC	4 cut(s)	11, 127, 269, 580
NdeII	GATC	1 cut(s)	798
NlaIII	CATG	5 cut(s)	25, 134, 509, 691, 699
NlaIV	GGNNCC	3 cut(s)	37, 177, 412
NmuCI	GTSAC	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	888
NspV	TTCGAA	1 cut(s)	298
PagI	TCATGA	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	83, 162, 757
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	4 cut(s)	157, 265, 286, 962
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PpuMI	RGGWCCY	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	746
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	746
PspN4I	GGNNCC	3 cut(s)	37, 177, 412
PspPI	GGNCC	2 cut(s)	333, 411
PspPPI	RGGWCCY	1 cut(s)	411
RsaI	GTAC	4 cut(s)	484, 504, 522, 918
RsaNI	GTAC	4 cut(s)	483, 503, 521, 917
RseI	CAYNNNNRTG	2 cut(s)	198, 510
SaqAI	TTAA	4 cut(s)	27, 393, 576, 609
SatI	GCNGC	4 cut(s)	156, 264, 285, 961
Sau3AI	GATC	1 cut(s)	798
Sau96I	GGNCC	2 cut(s)	333, 411
ScaI	AGTACT	1 cut(s)	522
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	748
SduI	GDGCHC	2 cut(s)	40, 205
SfaNI	GCATC	4 cut(s)	23, 325, 421, 995
SfuI	TTCGAA	1 cut(s)	298
SinI	GGWCC	2 cut(s)	333, 411
SmiMI	CAYNNNNRTG	2 cut(s)	198, 510
Sse9I	AATT	8 cut(s)	28, 97, 322, 390, 425, 495, 548, 968
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	1 cut(s)	746
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	525
TaiI	ACGT	1 cut(s)	866
TaqI	TCGA	2 cut(s)	298, 319
TaqII	GACCGA	1 cut(s)	432
TasI	AATT	8 cut(s)	28, 97, 322, 390, 425, 495, 548, 968
TatI	WGTACW	2 cut(s)	520, 916
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	83, 162, 757
Tru1I	TTAA	4 cut(s)	27, 393, 576, 609
Tru9I	TTAA	4 cut(s)	27, 393, 576, 609
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	3 cut(s)	155, 284, 960
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	2 cut(s)	24, 855
Van91I	CCANNNNNTGG	1 cut(s)	753
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	333, 411
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	2 cut(s)	322, 425
XspI	CTAG	1 cut(s)	668
ZrmI	AGTACT	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.