Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

1068743 .. 1069768

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTCAATATTGTGCTTATCTTTTCCCTTGAGATTATTCACAATGGGAGAAGATTTATCAATCATCATGATCTCAAGTGCCCAAAGAAATCTGGCTTTGGAAACTTCAGATTCAAACGAAACAGCTTTTGCCTTACTTCATCCAAATAAGCGTGCAAGACACGACAATGGTGTGTCATTTGCAAAATTCAAAGGGGTTGTGCCACAACAAAATGGTCACTGGGGTGCACAAATATATGCAGACAACCAAAGAATTTGGCTTGGCGCCTTCAAATCTGAGAAGGAATCTGCCATGGCTTATGATAGCGTGGCAATCAAGCTTCGAAATGGTAAAGATTTGCATAGAAAATTTTCCATGGACCAGCTTCACCGTTCAAGAGCCTCATTTCCAAAACCATTACTCAACAGATGCAATAATGAAATGATTAGGGATGGTTCCTATCCATCCAAATTTGATGCTTTTGTAAGGTCACAAACACAATCTCAAATTGAGGAAATGGGCAAGGACACCAATAACTCAATAAGAGTGCACGGTGATGGACAAGTATTGTGTAGGCAACTCTTCCAAAAAGAACTGACTCCAAGTGATGTGAGTAAGCTCAACAGGCTTGTGAGTCCAAAGAAATATGCCGTCGAGTATTTCCCATTTGAGAATGTGGAAGTACATGGGACTGAGGACATTGAGCTAGTTTTCTATGACAAGTTCACGAGGGTTTGGAAGTTTAGGTACTGCTATTGGAGGAGTAGCCAAAGCTTTGTATTGACAAGGGGTTGGAATAGATTTGTAAAGGAAAACAATTTGAAGGTAAATGATGTGATCACATTTTATGCATGTGAGAGTGATGATCAAGTAATAAGAGAGGAAGATAGAGAAAGTACTACATTTTGGTTAATTTATGTAATGCATAGTGAAGGTGAAATCAACAGATCATGTTTGGTTGAGGAGGCCAATGAGTGTGAGGATTTGCAGGTACAACTGGAACTAAATTTGGGGGAATGTAGCAGCTACAAAGTTTCAAACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

342

Amino Acids

39.59

Weight (kDa)

6.48

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	188 - 281	2.9e-22	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	263
AcsI	RAATTY	5 cut(s)	185, 252, 347, 449, 985
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	4 cut(s)	663, 728, 877, 972
AgsI	TTSAA	6 cut(s)	114, 190, 271, 375, 802, 1017
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	7 cut(s)	125, 319, 364, 598, 685, 753, 1005
AluI	AGCT	7 cut(s)	125, 319, 364, 598, 685, 753, 1005
Alw21I	GWGCWC	2 cut(s)	229, 531
Alw44I	GTGCAC	2 cut(s)	225, 527
AoxI	GGCC	1 cut(s)	945
ApaLI	GTGCAC	2 cut(s)	225, 527
ApeKI	GCWGC	1 cut(s)	1002
ApoI	RAATTY	5 cut(s)	185, 252, 347, 449, 985
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	359, 545, 926
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	3 cut(s)	82, 229, 531
BanI	GGYRCC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	710, 742
BauI	CACGAG	1 cut(s)	706
Bbv12I	GWGCWC	2 cut(s)	229, 531
BbvI	GCAGC	1 cut(s)	1014
BccI	CCATC	3 cut(s)	425, 451, 530
BceAI	ACGGC	1 cut(s)	614
BclI	TGATCA	2 cut(s)	816, 844
BfaI	CTAG	1 cut(s)	686
BfoI	RGCGCY	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	958
BisI	GCNGC	1 cut(s)	1003
BlsI	GCNGC	1 cut(s)	1004
BmcAI	AGTACT	1 cut(s)	877
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	265, 436
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	398, 445
BmuI	ACTGGG	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	2 cut(s)	49, 58
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	291, 354
Bse1I	ACTGG	2 cut(s)	224, 981
BseDI	CCNNGG	2 cut(s)	291, 354
BseGI	GGATG	3 cut(s)	139, 436, 443
BseMII	CTCAG	2 cut(s)	267, 663
BseNI	ACTGG	2 cut(s)	224, 981
BseRI	GAGGAG	2 cut(s)	754, 956
BseSI	GKGCMC	3 cut(s)	82, 229, 531
BseXI	GCAGC	1 cut(s)	1014
BshFI	GGCC	1 cut(s)	947
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	229, 531
BslFI	GGGAC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	947
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	3 cut(s)	82, 229, 531
Bsp143I	GATC	4 cut(s)	69, 816, 844, 926
Bsp19I	CCATGG	2 cut(s)	291, 354
BspANI	GGCC	1 cut(s)	947
BspCNI	CTCAG	2 cut(s)	268, 664
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	265, 436
BspMI	ACCTGC	1 cut(s)	958
BspT104I	TTCGAA	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	224, 981
BssECI	CCNNGG	2 cut(s)	291, 354
BssMI	GATC	4 cut(s)	69, 816, 844, 926
BssNI	GRCGYC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	706
BssT1I	CCWWGG	2 cut(s)	291, 354
Bst2BI	CACGAG	1 cut(s)	706
Bst4CI	ACNGT	2 cut(s)	371, 533
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	276, 672
BstDSI	CCRYGG	2 cut(s)	291, 354
BstF5I	GGATG	3 cut(s)	139, 436, 443
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	4 cut(s)	72, 819, 847, 929
BstMBI	GATC	4 cut(s)	69, 816, 844, 926
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNSI	RCATGY	1 cut(s)	834
BstSLI	GKGCMC	3 cut(s)	82, 229, 531
BstV1I	GCAGC	1 cut(s)	1014
BsuRI	GGCC	1 cut(s)	947
BtgI	CCRYGG	2 cut(s)	291, 354
BtsCI	GGATG	3 cut(s)	139, 436, 443
BtsIMutI	CAGTG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	4 cut(s)	662, 727, 876, 971
CviAII	CATG	6 cut(s)	67, 292, 355, 665, 831, 930
CviQI	GTAC	4 cut(s)	662, 727, 876, 971
DdeI	CTNAG	2 cut(s)	276, 672
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	4 cut(s)	71, 818, 846, 928
DpnII	GATC	4 cut(s)	69, 816, 844, 926
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Eco130I	CCWWGG	2 cut(s)	291, 354
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	291, 354
EcoT22I	ATGCAT	2 cut(s)	832, 906
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	291, 354
FaeI	CATG	6 cut(s)	70, 295, 358, 668, 834, 933
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	6 cut(s)	66, 291, 354, 664, 830, 929
FbaI	TGATCA	2 cut(s)	816, 844
Fnu4HI	GCNGC	1 cut(s)	1003
FokI	GGATG	3 cut(s)	126, 430, 443
Fsp4HI	GCNGC	1 cut(s)	1003
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	1003
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	947
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	6 cut(s)	70, 295, 358, 668, 834, 933
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	2 cut(s)	317, 751
HinfI	GANTC	4 cut(s)	110, 284, 577, 613
HphI	GGTGA	3 cut(s)	359, 545, 926
Hpy166II	GTNNAC	3 cut(s)	227, 529, 705
Hpy188I	TCNGA	2 cut(s)	109, 277
Hpy188III	TCNNGA	3 cut(s)	67, 375, 706
Hpy8I	GTNNAC	3 cut(s)	227, 529, 705
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	4 cut(s)	274, 277, 796, 905
HpyCH4III	ACNGT	2 cut(s)	371, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	2 cut(s)	276, 672
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	6 cut(s)	70, 295, 358, 668, 834, 933
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
Ksp22I	TGATCA	2 cut(s)	816, 844
Kzo9I	GATC	4 cut(s)	69, 816, 844, 926
LpnPI	CCDG	7 cut(s)	77, 205, 374, 589, 953, 962, 1006
Lsp1109I	GCAGC	1 cut(s)	1014
LweI	GCATC	2 cut(s)	398, 445
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	215, 468
MalI	GATC	4 cut(s)	71, 818, 846, 928
MboI	GATC	4 cut(s)	69, 816, 844, 926
MboII	GAAGA	3 cut(s)	62, 553, 875
MhlI	GDGCHC	3 cut(s)	82, 229, 531
MluCI	AATT	8 cut(s)	185, 252, 347, 449, 486, 796, 891, 985
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	571, 622
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	9 cut(s)	391, 484, 667, 702, 732, 853, 934, 937, 952
Mph1103I	ATGCAT	2 cut(s)	832, 906
MroXI	GAANNNNTTC	1 cut(s)	349
MseI	TTAA	1 cut(s)	890
MslI	CAYNNNNRTG	3 cut(s)	165, 222, 534
MwoI	GCNNNNNNNGC	1 cut(s)	604
NarI	GGCGCC	1 cut(s)	264
NcoI	CCATGG	2 cut(s)	291, 354
NdeII	GATC	4 cut(s)	69, 816, 844, 926
NlaIII	CATG	6 cut(s)	70, 295, 358, 668, 834, 933
NlaIV	GGNNCC	2 cut(s)	265, 436
NmuCI	GTSAC	2 cut(s)	215, 468
NsiI	ATGCAT	2 cut(s)	832, 906
NspI	RCATGY	1 cut(s)	834
NspV	TTCGAA	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	222
PagI	TCATGA	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	110, 284
PkrI	GCNGC	1 cut(s)	1004
PleI	GAGTC	2 cut(s)	571, 621
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	2 cut(s)	571, 621
PspN4I	GGNNCC	2 cut(s)	265, 436
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	4 cut(s)	663, 728, 877, 972
RsaNI	GTAC	4 cut(s)	662, 727, 876, 971
RseI	CAYNNNNRTG	3 cut(s)	165, 222, 534
SaqAI	TTAA	1 cut(s)	890
SatI	GCNGC	1 cut(s)	1003
Sau3AI	GATC	4 cut(s)	69, 816, 844, 926
Sau96I	GGNCC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	2 cut(s)	571, 622
SduI	GDGCHC	3 cut(s)	82, 229, 531
SfaNI	GCATC	2 cut(s)	398, 445
SfoI	GGCGCC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	3 cut(s)	165, 222, 534
SmlI	CTYRAG	2 cut(s)	28, 73
SmoI	CTYRAG	2 cut(s)	28, 73
Sse9I	AATT	8 cut(s)	185, 252, 347, 449, 486, 796, 891, 985
SspDI	GGCGCC	1 cut(s)	263
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	686
StyI	CCWWGG	2 cut(s)	291, 354
TaaI	ACNGT	2 cut(s)	371, 533
TaqI	TCGA	2 cut(s)	322, 633
TasI	AATT	8 cut(s)	185, 252, 347, 449, 486, 796, 891, 985
TatI	WGTACW	2 cut(s)	661, 875
TfiI	GAWTC	2 cut(s)	110, 284
Tru1I	TTAA	1 cut(s)	890
Tru9I	TTAA	1 cut(s)	890
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	2 cut(s)	215, 468
TseI	GCWGC	1 cut(s)	1002
Tsp45I	GTSAC	2 cut(s)	215, 468
TspDTI	ATGAA	2 cut(s)	128, 432
TspRI	CASTG	1 cut(s)	224
VneI	GTGCAC	2 cut(s)	225, 527
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	5 cut(s)	185, 252, 347, 449, 985
XceI	RCATGY	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	877
Zsp2I	ATGCAT	2 cut(s)	832, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.