Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

21917450 .. 21918559

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTTTAGAAATGCAAGAGGATTTATCAAGCACGGTCTCAAACGCAGGAACAAGTGCAACAACAAGGTCATCGAAGAGGAGGACATATCAAGCAGAAGCTTCTGTTTCAAGCATCACTGCAGGTTTCTTGGTTCAAGAGCGTAAGCGCTTGAGTCATGGGAGCAGCAATCAGCTGTCTGCGAATACCAATTATAAAGGAGTTGTGCAGCAGCCAAATGGCCGTTGGGGAGCTCAGATCTATGCCAATCACAATAGGGTTTGGCTTGGAACATTTGATTCCGATATTAAGGCAGCCATGGCTTATGATAGTGCTGCAATCAAGCTTCATAACGGAGAGTGCCAAAGGAACTTTGCGTGGACAAATACAATTATTCAAGAACGACACTTTCAGAATCTCTATAGCCAAGAAGCCGTGCTCAACATGATTAAGGACGGGTCATACCAGGCTAGGTTTGTTGAATTTCTCGTGGCTTGCCAGGCAGCAGAAGTAATGTCCGGGTCGAACTCAGCTAGGGTGCAACAAAGCATGAGAGATATCTTTCCCAAACAACTCTTCCAAAAAGAATTGACGCCAAGTGATGTTGGTAAGCTGAACAGACTAGTCATACCGAAAAATTACGCAACTAAATTTTTCCCTCGTATTGATGAATCCATGCAGGGAGGGTTGGATGAAAACAACCCTGCGCCTGATGTACAGCTCTCATTTTATGATGAAAACATGAGGGGGCCATGGAAGTTTAGGTACTGTTATTGGAAGAGCAGCCAAAGCTTTGTGTTCACCCGAGGCTGGAATCGATTTGTAAAGAACAGCAAATTGAAAGCCAATGACACTATCAGATTCTATGAGTGCCATATTGAGGAAGGAGATAATAAGGACCCCAAGTCATTCTACATGATCAAAATCGACCGGGCTGAAGATTCTGATAATGTCAATATTGTTGAAAATGCTAGCCAATCTGTTTCCCCCGCCCTTACCTTCTTGCATGCCAAGAAACTTGGAGAGGAGAAAGATGACATAAGTACACAAACTGCAGAAGTTATTGATGAAATCCCACAAGTTAATGGTGACAATCAAACAGTTAAGCTCTTCGGTGTTGTTATCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

370

Amino Acids

41.78

Weight (kDa)

7.02

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	63 - 111	1e-09	AP2 domain
B3	PF02362	186 - 282	1.1e-18	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	113
AciI	CCGC	1 cut(s)	969
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	461, 629
AcuI	CTGAAG	1 cut(s)	936
AcyI	GRCGYC	1 cut(s)	572
AfaI	GTAC	3 cut(s)	696, 746, 1024
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	789, 859
AgsI	TTSAA	6 cut(s)	111, 137, 377, 461, 820, 944
AhdI	GACNNNNNGTC	1 cut(s)	883
AhlI	ACTAGT	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	444, 477
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
Alw21I	GWGCWC	2 cut(s)	235, 420
Alw26I	GTCTC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	783
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	2 cut(s)	220, 728
ApeKI	GCWGC	7 cut(s)	165, 208, 211, 293, 314, 482, 762
ApoI	RAATTY	2 cut(s)	461, 629
AspLEI	GCGC	2 cut(s)	150, 688
AspS9I	GGNCC	2 cut(s)	728, 877
AsuC2I	CCSGG	2 cut(s)	499, 911
AsuHPI	GGTGA	2 cut(s)	772, 1079
AsuNHI	GCTAGC	1 cut(s)	950
AvaI	CYCGRG	1 cut(s)	783
AvaII	GGWCC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	235
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
BauI	CACGAG	1 cut(s)	467
Bbv12I	GWGCWC	2 cut(s)	235, 420
BbvI	GCAGC	7 cut(s)	177, 220, 223, 301, 305, 494, 774
BceAI	ACGGC	2 cut(s)	207, 398
BciT130I	CCWGG	2 cut(s)	446, 479
BclI	TGATCA	1 cut(s)	897
BcnI	CCSGG	2 cut(s)	499, 911
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	601
BfaI	CTAG	4 cut(s)	450, 513, 602, 951
BfmI	CTRYAG	3 cut(s)	120, 400, 1032
BfoI	RGCGCY	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	7 cut(s)	166, 209, 212, 294, 315, 483, 763
BlsI	GCNGC	7 cut(s)	167, 210, 213, 295, 316, 484, 764
Bme1390I	CCNGG	4 cut(s)	446, 479, 499, 911
Bme18I	GGWCC	1 cut(s)	877
BmeRI	GACNNNNNGTC	1 cut(s)	883
BmeT110I	CYCGRG	1 cut(s)	783
BmgT120I	GGNCC	2 cut(s)	728, 877
BmiI	GGNNCC	2 cut(s)	729, 879
BmrFI	CCNGG	4 cut(s)	446, 479, 499, 911
BmsI	GCATC	1 cut(s)	123
BmtI	GCTAGC	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	2 cut(s)	499, 911
Bsa29I	ATCGAT	1 cut(s)	796
BsaBI	GATNNNNATC	1 cut(s)	902
BsaHI	GRCGYC	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	297, 731, 784
Bsc4I	CCNNNNNNNGG	2 cut(s)	789, 859
Bse8I	GATNNNNATC	1 cut(s)	902
BseBI	CCWGG	2 cut(s)	446, 479
BseCI	ATCGAT	1 cut(s)	796
BseDI	CCNNGG	3 cut(s)	297, 731, 784
BseGI	GGATG	1 cut(s)	676
BseJI	GATNNNNATC	1 cut(s)	902
BseLI	CCNNNNNNNGG	2 cut(s)	789, 859
BseMII	CTCAG	2 cut(s)	248, 522
BseRI	GAGGAG	2 cut(s)	94, 1019
BseXI	GCAGC	7 cut(s)	177, 220, 223, 301, 305, 494, 774
BsgI	GTGCAG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	910
BshFI	GGCC	2 cut(s)	222, 730
BshVI	ATCGAT	1 cut(s)	796
BsiEI	CGRYCG	1 cut(s)	910
BsiHKAI	GWGCWC	2 cut(s)	235, 420
BsiHKCI	CYCGRG	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	498, 910
BslI	CCNNNNNNNGG	2 cut(s)	789, 859
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	222, 730
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	783
Bsp1286I	GDGCHC	2 cut(s)	235, 420
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	2 cut(s)	237, 897
Bsp19I	CCATGG	2 cut(s)	297, 731
BspACI	CCGC	1 cut(s)	969
BspANI	GGCC	2 cut(s)	222, 730
BspCNI	CTCAG	2 cut(s)	247, 521
BspDI	ATCGAT	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	729, 879
BspMAI	CTGCAG	2 cut(s)	124, 1036
BspMI	ACCTGC	1 cut(s)	113
BspOI	GCTAGC	1 cut(s)	954
BspQI	GCTCTTC	2 cut(s)	752, 1094
BspTNI	GGTCTC	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	694
BssECI	CCNNGG	3 cut(s)	297, 731, 784
BssMI	GATC	2 cut(s)	237, 897
BssNI	GRCGYC	1 cut(s)	572
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	2 cut(s)	297, 731
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	446, 479
Bst4CI	ACNGT	3 cut(s)	37, 749, 1081
Bst6I	CTCTTC	4 cut(s)	71, 560, 752, 1094
BstACI	GRCGYC	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	694
BstC8I	GCNNGC	3 cut(s)	475, 952, 987
BstDEI	CTNAG	2 cut(s)	234, 508
BstDSI	CCRYGG	2 cut(s)	297, 731
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	150, 688
BstKTI	GATC	2 cut(s)	240, 900
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	237, 897
BstMCI	CGRYCG	1 cut(s)	910
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 479, 768
BstNI	CCWGG	2 cut(s)	446, 479
BstNSI	RCATGY	1 cut(s)	989
BstSCI	CCNGG	4 cut(s)	444, 477, 497, 909
BstSFI	CTRYAG	3 cut(s)	120, 400, 1032
BstV1I	GCAGC	7 cut(s)	177, 220, 223, 301, 305, 494, 774
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	222, 730
BsuTUI	ATCGAT	1 cut(s)	796
BtgI	CCRYGG	2 cut(s)	297, 731
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	475, 952, 987
CfoI	GCGC	2 cut(s)	150, 688
Cfr13I	GGNCC	2 cut(s)	728, 877
ClaI	ATCGAT	1 cut(s)	796
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	695, 745, 1023
CviAII	CATG	9 cut(s)	158, 298, 424, 529, 655, 721, 732, 895, 986
CviQI	GTAC	3 cut(s)	695, 745, 1023
DdeI	CTNAG	2 cut(s)	234, 508
DpnI	GATC	2 cut(s)	239, 899
DpnII	GATC	2 cut(s)	237, 897
DriI	GACNNNNNGTC	1 cut(s)	883
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	4 cut(s)	71, 560, 752, 1094
Eam1105I	GACNNNNNGTC	1 cut(s)	883
EarI	CTCTTC	4 cut(s)	71, 560, 752, 1094
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	297, 731
Eco24I	GRGCYC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	877
Eco47III	AGCGCT	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	936
Eco88I	CYCGRG	1 cut(s)	783
EcoICRI	GAGCTC	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	877
EcoRII	CCWGG	2 cut(s)	444, 477
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	297, 731
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	297, 731
FaeI	CATG	9 cut(s)	161, 301, 427, 532, 658, 724, 735, 898, 989
FatI	CATG	9 cut(s)	157, 297, 423, 528, 654, 720, 731, 894, 985
FauI	CCCGC	1 cut(s)	976
FbaI	TGATCA	1 cut(s)	897
Fnu4HI	GCNGC	7 cut(s)	166, 209, 212, 294, 315, 483, 763
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	7 cut(s)	166, 209, 212, 294, 315, 483, 763
FspBI	CTAG	4 cut(s)	450, 513, 602, 951
GlaI	GCGC	2 cut(s)	149, 687
GluI	GCNGC	7 cut(s)	166, 209, 212, 294, 315, 483, 763
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	222, 730
HapII	CCGG	2 cut(s)	498, 910
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	2 cut(s)	150, 688
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	9 cut(s)	161, 301, 427, 532, 658, 724, 735, 898, 989
Hin6I	GCGC	2 cut(s)	148, 686
HinP1I	GCGC	2 cut(s)	148, 686
HindIII	AAGCTT	3 cut(s)	99, 323, 769
HinfI	GANTC	7 cut(s)	154, 278, 394, 650, 793, 840, 920
HpaII	CCGG	2 cut(s)	498, 910
HphI	GGTGA	2 cut(s)	772, 1079
Hpy166II	GTNNAC	3 cut(s)	360, 780, 1025
Hpy188I	TCNGA	5 cut(s)	237, 283, 393, 839, 925
Hpy188III	TCNNGA	2 cut(s)	137, 377
Hpy8I	GTNNAC	3 cut(s)	360, 780, 1025
HpyAV	CCTTC	2 cut(s)	857, 988
HpyCH4III	ACNGT	3 cut(s)	37, 749, 1081
HpyCH4V	TGCA	9 cut(s)	16, 59, 122, 208, 317, 520, 658, 985, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 479, 768
HpyF3I	CTNAG	2 cut(s)	234, 508
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	9 cut(s)	161, 301, 427, 532, 658, 724, 735, 898, 989
HspAI	GCGC	2 cut(s)	148, 686
Ksp22I	TGATCA	1 cut(s)	897
Kzo9I	GATC	2 cut(s)	237, 897
LguI	GCTCTTC	2 cut(s)	752, 1094
LmnI	GCTCC	2 cut(s)	162, 230
Lsp1109I	GCAGC	7 cut(s)	177, 220, 223, 301, 305, 494, 774
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	4 cut(s)	450, 513, 602, 951
MaeIII	GTNAC	1 cut(s)	1067
MalI	GATC	2 cut(s)	239, 899
MboI	GATC	2 cut(s)	237, 897
MboII	GAAGA	5 cut(s)	88, 547, 769, 929, 1081
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	235, 420
MluCI	AATT	7 cut(s)	190, 369, 461, 566, 616, 629, 815
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	9 cut(s)	13, 72, 75, 648, 656, 717, 779, 853, 997
MseI	TTAA	4 cut(s)	288, 429, 1062, 1083
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	2 cut(s)	498, 910
MspR9I	CCNGG	4 cut(s)	446, 479, 499, 911
MvaI	CCWGG	2 cut(s)	446, 479
MwoI	GCNNNNNNNGC	3 cut(s)	299, 479, 768
NciI	CCSGG	2 cut(s)	499, 911
NcoI	CCATGG	2 cut(s)	297, 731
NdeII	GATC	2 cut(s)	237, 897
NheI	GCTAGC	1 cut(s)	950
NlaIII	CATG	9 cut(s)	161, 301, 427, 532, 658, 724, 735, 898, 989
NlaIV	GGNNCC	2 cut(s)	729, 879
NmuCI	GTSAC	1 cut(s)	1067
NspI	RCATGY	1 cut(s)	989
PaeI	GCATGC	1 cut(s)	989
PciSI	GCTCTTC	2 cut(s)	752, 1094
PfeI	GAWTC	6 cut(s)	278, 394, 650, 793, 840, 920
PkrI	GCNGC	7 cut(s)	167, 210, 213, 295, 316, 484, 764
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	877
PsiI	TTATAA	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	877
Psp6I	CCWGG	2 cut(s)	444, 477
PspGI	CCWGG	2 cut(s)	444, 477
PspN4I	GGNNCC	2 cut(s)	729, 879
PspPI	GGNCC	2 cut(s)	728, 877
PspPPI	RGGWCCY	1 cut(s)	877
PstI	CTGCAG	2 cut(s)	124, 1036
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	3 cut(s)	696, 746, 1024
RsaNI	GTAC	3 cut(s)	695, 745, 1023
SacI	GAGCTC	1 cut(s)	235
SapI	GCTCTTC	2 cut(s)	752, 1094
SaqAI	TTAA	4 cut(s)	288, 429, 1062, 1083
SatI	GCNGC	7 cut(s)	166, 209, 212, 294, 315, 483, 763
Sau3AI	GATC	2 cut(s)	237, 897
Sau96I	GGNCC	2 cut(s)	728, 877
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	4 cut(s)	446, 479, 499, 911
SduI	GDGCHC	2 cut(s)	235, 420
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	3 cut(s)	120, 400, 1032
SinI	GGWCC	1 cut(s)	877
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SpeI	ACTAGT	1 cut(s)	601
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	7 cut(s)	190, 369, 461, 566, 616, 629, 815
SsiI	CCGC	1 cut(s)	969
SspI	AATATT	1 cut(s)	937
SspMI	CTAG	4 cut(s)	450, 513, 602, 951
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	4 cut(s)	444, 477, 497, 909
StyI	CCWWGG	2 cut(s)	297, 731
TaaI	ACNGT	3 cut(s)	37, 749, 1081
TaqI	TCGA	4 cut(s)	74, 503, 796, 906
TasI	AATT	7 cut(s)	190, 369, 461, 566, 616, 629, 815
TatI	WGTACW	2 cut(s)	694, 1022
TfiI	GAWTC	6 cut(s)	278, 394, 650, 793, 840, 920
Tru1I	TTAA	4 cut(s)	288, 429, 1062, 1083
Tru9I	TTAA	4 cut(s)	288, 429, 1062, 1083
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	1067
TseI	GCWGC	7 cut(s)	165, 208, 211, 293, 314, 482, 762
Tsp45I	GTSAC	1 cut(s)	1067
TspDTI	ATGAA	5 cut(s)	317, 663, 687, 729, 1062
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	877
XapI	RAATTY	2 cut(s)	461, 629
XceI	RCATGY	1 cut(s)	989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	222
XspI	CTAG	4 cut(s)	450, 513, 602, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.