Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Reverse (-)

598519 .. 599556

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1009000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAAGAGGGCATGTCAAGCACGGTCTCAAACAAAGGAGTGAAATGTAAGACTGGAGAAGTTTGCGGTCCAAGCCTTGCTACGAATGACTCATCAGATGGTGCTAGTAGGCGTGTATCGAAAAGGTTCAAAGGAGTTGTTGAGCAGCCAAATGGGCATTGGGGTGCCCAGATATATGCCAATCACGAAAGGGTTTGGCTTGGCACGTTCAGCTCTGAGAACGAAGCAGCTATGGCTTATGATAGCGCTGCAATCAAGCTTCGTGGTTGCGATTGCCATCGCAACTTTCCATGGACCAAATTCACCTTTGAAGAGCCACACTTTCAAAATCAGTACTCTAAAGAAGCTGTGTTGAGAATGATCAAGGATGGTTCCTACCAGGCCGAGTTCTTAGAATATCGAAGGAGTCACGCTGCAAGGGAGAGTTTGAGGAGTGATATCCAATTTGGCAGCTTGGCTAGGGTGCATAACAACGGAAATGGAAAGATGTTGAACCGACTTCTTTTCCAAAAAGAGCTGACACCAAGTGATGTTGGTAAGCTGAATAGACTTGTGATACCGGTTAGCAATGCCAAACGGTGCTTTCCCAGCATTTCTGAAGCCACAAGTCAGAAGGTCGAGAGTTGCTCCAGCCAGCTAGTGTTTTATGATAATATGATGAGGTCGTGGACTTTCCGGTACTGTTATTGGAAGAGTAGCAGGAGTTTTGTGTTCACCAAGGGTTGGAGTCGGTTCGTAAAGACGCACCATTTGAAGGCAAAAGACATTCTTACATTCTTCCAATGCCAGTACAAGCAACTGGGGGACAATGGTAACAAGGAGCCTCAAACATTTTACATGGTTAAAGTTAACTGGGATGGCGTCGAAAGCGAAGATGTTAGCTGCTTGGTTGAGAATGATGCTAAAAATTATCAATATGATAACTGTAAACTTGAAGCTGTAAGCCAAAATATGAATGAAGCTGAAGGAATCCTTGCTGATCAAAAGAAACGTTTCAGGCTTTTCGGCGTGGAGATCTGCAACGAGGTGGCGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

346

Amino Acids

39.51

Weight (kDa)

8.75

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	42 - 89	1.9e-07	AP2 domain
B3	PF02362	169 - 259	8.2e-22	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	723
AciI	CCGC	1 cut(s)	66
AclI	AACGTT	1 cut(s)	991
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	618, 984
AcyI	GRCGYC	1 cut(s)	861
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	3 cut(s)	335, 680, 791
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	723, 754
AgeI	ACCGGT	1 cut(s)	559
AgsI	TTSAA	6 cut(s)	130, 311, 326, 493, 754, 935
AjnI	CCWGG	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	6 cut(s)	145, 227, 248, 413, 450, 882
ApoI	RAATTY	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
AsiGI	ACCGGT	1 cut(s)	559
Asp700I	GAANNNNTTC	2 cut(s)	125, 992
AspLEI	GCGC	2 cut(s)	248, 1033
AspS9I	GGNCC	2 cut(s)	68, 294
AsuHPI	GGTGA	2 cut(s)	295, 706
AvaII	GGWCC	2 cut(s)	68, 294
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	6 cut(s)	157, 235, 239, 400, 462, 869
BccI	CCATC	4 cut(s)	92, 285, 362, 851
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	2 cut(s)	360, 979
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	105, 459, 638
BfoI	RGCGCY	1 cut(s)	249
BglI	GCCNNNNNGGC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	1014
BisI	GCNGC	6 cut(s)	146, 228, 249, 414, 451, 883
BlsI	GCNGC	6 cut(s)	147, 229, 250, 415, 452, 884
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	68, 294
BmgT120I	GGNCC	2 cut(s)	68, 294
BmiI	GGNNCC	3 cut(s)	166, 373, 822
BmrFI	CCNGG	1 cut(s)	380
BmrI	ACTGGG	2 cut(s)	809, 862
BmsI	GCATC	1 cut(s)	889
BmuI	ACTGGG	2 cut(s)	809, 862
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
BpmI	CTGGAG	2 cut(s)	75, 613
BsaBI	GATNNNNATC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	861
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	290, 717
BsaWI	WCCGGW	2 cut(s)	559, 675
Bsc4I	CCNNNNNNNGG	2 cut(s)	723, 754
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	4 cut(s)	58, 787, 804, 857
Bse3DI	GCAATG	1 cut(s)	574
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	290, 717
BseGI	GGATG	2 cut(s)	373, 862
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	723, 754
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	4 cut(s)	58, 787, 804, 857
BseRI	GAGGAG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	6 cut(s)	157, 235, 239, 400, 462, 869
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	1 cut(s)	383
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	559
BsiSI	CCGG	2 cut(s)	560, 676
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	2 cut(s)	723, 754
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	360, 979, 1014
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	166, 373, 822
BspQI	GCTCTTC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	4 cut(s)	58, 787, 804, 857
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	2 cut(s)	290, 717
BssMI	GATC	3 cut(s)	360, 979, 1014
BssNI	GRCGYC	1 cut(s)	861
BssT1I	CCWWGG	2 cut(s)	290, 717
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	4 cut(s)	25, 579, 683, 926
Bst6I	CTCTTC	2 cut(s)	306, 686
BstACI	GRCGYC	1 cut(s)	861
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	2 cut(s)	216, 391
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	373, 862
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	248, 1033
BstKTI	GATC	3 cut(s)	363, 982, 1017
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	360, 979, 1014
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 72, 154, 210, 233, 588, 867
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	6 cut(s)	157, 235, 239, 400, 462, 869
BstX2I	RGATCY	1 cut(s)	1014
BstYI	RGATCY	1 cut(s)	1014
BsuRI	GGCC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	373, 862
Cac8I	GCNNGC	1 cut(s)	635
CfoI	GCGC	2 cut(s)	248, 1033
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	68, 294
CseI	GACGC	2 cut(s)	751, 850
Csp6I	GTAC	3 cut(s)	334, 679, 790
CspAI	ACCGGT	1 cut(s)	559
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	3 cut(s)	13, 291, 838
CviQI	GTAC	3 cut(s)	334, 679, 790
DdeI	CTNAG	2 cut(s)	216, 391
DpnI	GATC	3 cut(s)	362, 981, 1016
DpnII	GATC	3 cut(s)	360, 979, 1014
DraIII	CACNNNGTG	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	306, 686
EarI	CTCTTC	2 cut(s)	306, 686
Eco130I	CCWWGG	2 cut(s)	290, 717
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	68, 294
Eco47III	AGCGCT	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	618, 984
EcoRII	CCWGG	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	290, 717
ErhI	CCWWGG	2 cut(s)	290, 717
FaeI	CATG	3 cut(s)	16, 294, 841
FalI	AAGNNNNNCTT	4 cut(s)	753, 785, 957, 989
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	3 cut(s)	12, 290, 837
FbaI	TGATCA	2 cut(s)	360, 979
Fnu4HI	GCNGC	6 cut(s)	146, 228, 249, 414, 451, 883
FokI	GGATG	2 cut(s)	380, 869
Fsp4HI	GCNGC	6 cut(s)	146, 228, 249, 414, 451, 883
FspBI	CTAG	3 cut(s)	105, 459, 638
GlaI	GCGC	2 cut(s)	247, 1032
GluI	GCNGC	6 cut(s)	146, 228, 249, 414, 451, 883
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	75, 613
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	2 cut(s)	560, 676
HgaI	GACGC	2 cut(s)	751, 850
HhaI	GCGC	2 cut(s)	248, 1033
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	3 cut(s)	16, 294, 841
Hin6I	GCGC	2 cut(s)	246, 1031
HinP1I	GCGC	2 cut(s)	246, 1031
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	4 cut(s)	89, 406, 727, 969
HpaI	GTTAAC	1 cut(s)	850
HpaII	CCGG	2 cut(s)	560, 676
HphI	GGTGA	2 cut(s)	295, 706
Hpy166II	GTNNAC	4 cut(s)	669, 714, 850, 929
Hpy188I	TCNGA	4 cut(s)	97, 217, 598, 612
Hpy188III	TCNNGA	2 cut(s)	185, 619
Hpy8I	GTNNAC	4 cut(s)	669, 714, 850, 929
Hpy99I	CGWCG	1 cut(s)	866
HpyAV	CCTTC	4 cut(s)	396, 607, 748, 959
HpyCH4III	ACNGT	4 cut(s)	25, 579, 683, 926
HpyCH4IV	ACGT	2 cut(s)	206, 991
HpyCH4V	TGCA	4 cut(s)	251, 416, 466, 1020
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 72, 154, 210, 233, 588, 867
HpyF3I	CTNAG	2 cut(s)	216, 391
HpySE526I	ACGT	2 cut(s)	206, 991
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	3 cut(s)	16, 294, 841
HspAI	GCGC	2 cut(s)	246, 1031
Ksp22I	TGATCA	2 cut(s)	360, 979
KspAI	GTTAAC	1 cut(s)	850
Kzo9I	GATC	3 cut(s)	360, 979, 1014
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	632, 820
Lsp1109I	GCAGC	6 cut(s)	157, 235, 239, 400, 462, 869
LweI	GCATC	1 cut(s)	889
MaeI	CTAG	3 cut(s)	105, 459, 638
MaeII	ACGT	2 cut(s)	206, 991
MaeIII	GTNAC	2 cut(s)	407, 812
MalI	GATC	3 cut(s)	362, 981, 1016
MboI	GATC	3 cut(s)	360, 979, 1014
MboII	GAAGA	5 cut(s)	17, 323, 703, 769, 884
MflI	RGATCY	1 cut(s)	1014
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	299, 443, 907
MlyI	GAGTC	3 cut(s)	83, 415, 736
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	4 cut(s)	423, 654, 834, 1018
MroXI	GAANNNNTTC	2 cut(s)	125, 992
MseI	TTAA	2 cut(s)	843, 849
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	2 cut(s)	560, 676
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	7 cut(s)	18, 72, 154, 210, 233, 588, 867
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	3 cut(s)	360, 979, 1014
NlaIII	CATG	3 cut(s)	16, 294, 841
NlaIV	GGNNCC	3 cut(s)	166, 373, 822
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	125, 992
PfeI	GAWTC	1 cut(s)	969
PflMI	CCANNNNNTGG	1 cut(s)	723
PinAI	ACCGGT	1 cut(s)	559
PkrI	GCNGC	6 cut(s)	147, 229, 250, 415, 452, 884
PleI	GAGTC	3 cut(s)	83, 414, 735
PpsI	GAGTC	3 cut(s)	83, 414, 735
Psp1406I	AACGTT	1 cut(s)	991
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	166, 373, 822
PspPI	GGNCC	2 cut(s)	68, 294
PsuI	RGATCY	1 cut(s)	1014
RsaI	GTAC	3 cut(s)	335, 680, 791
RsaNI	GTAC	3 cut(s)	334, 679, 790
RseI	CAYNNNNRTG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	843, 849
SatI	GCNGC	6 cut(s)	146, 228, 249, 414, 451, 883
Sau3AI	GATC	3 cut(s)	360, 979, 1014
Sau96I	GGNCC	2 cut(s)	68, 294
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	3 cut(s)	83, 415, 736
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	889
SinI	GGWCC	2 cut(s)	68, 294
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	299, 443, 907
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	3 cut(s)	105, 459, 638
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	290, 717
TaaI	ACNGT	4 cut(s)	25, 579, 683, 926
TaiI	ACGT	2 cut(s)	209, 994
TaqI	TCGA	4 cut(s)	119, 400, 618, 864
TasI	AATT	3 cut(s)	299, 443, 907
TatI	WGTACW	2 cut(s)	333, 789
TfiI	GAWTC	1 cut(s)	969
Tru1I	TTAA	2 cut(s)	843, 849
Tru9I	TTAA	2 cut(s)	843, 849
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	6 cut(s)	145, 227, 248, 413, 450, 882
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	968, 972
TspGWI	ACGGA	1 cut(s)	489
Van91I	CCANNNNNTGG	1 cut(s)	723
VpaK11BI	GGWCC	2 cut(s)	68, 294
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmnI	GAANNNNTTC	2 cut(s)	125, 992
XspI	CTAG	3 cut(s)	105, 459, 638
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.