Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Reverse (-)

86521012 .. 86522109

Gene Structure 1098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCCAATATTATTGTACAGCTTATCTTTTCCCAAATTCACAATGGAAGATGAAGCATCAACCATGATTAATTCAAGTGCCCTTAAAAACAATAACAGCGTTGTAGTGCCGGGAGAAACGTCGGGTTCAAACGACACCAATTTTGAACTTCGCCCGACTAAGCGTTTGAGGCATGACAATGATGTCTCACTTGCAAAATTCAAAGGAGTGGTGCCACAACAAAATGGTCATTGGGGTGCACAGATATACGCAAACCACCAAAGAATTTGGCTTGGCACTTTCAAATCAGAGAACGAAGCGGCCATGGCTTACGATAGTGCTGCAATCAAGCTCCGAAAAGGTAACGAGTCCCATAGAAATTTCCCTTGGACCAACATGACCATTCAAGAGCCTGATTTCCAAAGCCATCTCACCACAGAAGAAGTAATTAAAATGATTAGGGACGGTTCGTATCCATCCAAATTTGGTGCCTTCGTTAGGTCACAAACACAGTCTCAGAGTGAGGAAGTTGGAAAGGGTACTCCCAGCCAAATTACGGTACATGGGAATGGACAAGTACTGTGTAGGCAACTATTTCAAAAGGAATTGACACCTAGCGATGTGGGTAAGCTTAATAGGCTTGTGATACCGAAGAAATATGCTGTCAAGTATTTTCCTTGTATTTGTGAGACTATGGAAGAAAATGGGGTTGACGATGTTGAGCTAGTTTTCTATGACAAGGTCATGAGGGCATGGAAATTTAGGTATTGCTATTGGAAGAGTAGTCAAAGTTTTGTCTTCACAAGGGGTTGGAATCGGTTTGTGAAGGAAAACAGCTTGAAGGCAAATGATGTGATCACATTCTATACATGTGAGAGTGCTGAGTTAATAAGAGATGAAAGTGGAGAAGTTACTACTACATTTTCCTTGATTGATGTAATGCATGGTGAGGCAGAAAACAACAAATGTTTAGTTGAGAAGGAGGGGAAACTGGAACTACATCTGAGCGGAAATAGCAGCTACAAATTGCAAGAAGGTGAATGTAAACATGGTGAAGAAAATAAGACATCCATGGTGGAGGAAAAAGGAGTTAGGCTCTTTGGTGTGAATATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

365

Amino Acids

41.53

Weight (kDa)

6.34

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	66 - 113	1.8e-06	AP2 domain
B3	PF02362	192 - 285	2.1e-23	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccB1I	GGYRCC	2 cut(s)	211, 467
AccBSI	CCGCTC	1 cut(s)	987
AciI	CCGC	2 cut(s)	299, 987
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	6 cut(s)	35, 197, 264, 358, 461, 737
AfaI	GTAC	4 cut(s)	17, 520, 540, 558
AfiI	CCNNNNNNNGG	2 cut(s)	477, 535
AflIII	ACRYGT	1 cut(s)	848
AgsI	TTSAA	8 cut(s)	75, 129, 146, 202, 283, 386, 578, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	6 cut(s)	21, 331, 610, 703, 816, 999
AluI	AGCT	6 cut(s)	21, 331, 610, 703, 816, 999
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	3 cut(s)	190, 498, 662
Alw44I	GTGCAC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	320, 996
ApoI	RAATTY	6 cut(s)	35, 197, 264, 358, 461, 737
ArsI	GACNNNNNNTTYG	4 cut(s)	125, 148, 157, 180
AseI	ATTAAT	2 cut(s)	69, 1092
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	4 cut(s)	403, 938, 1028, 1043
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	2 cut(s)	82, 241
BanI	GGYRCC	2 cut(s)	211, 467
BbsI	GAAGAC	1 cut(s)	769
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	307, 1008
BccI	CCATC	2 cut(s)	414, 463
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	834
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	190, 498, 662
BfaI	CTAG	2 cut(s)	594, 704
BfuI	GTATCC	1 cut(s)	462
BisI	GCNGC	3 cut(s)	300, 321, 997
BlsI	GCNGC	3 cut(s)	301, 322, 998
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	213, 469
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	769
BplI	GAGNNNNNCTC	2 cut(s)	1059, 1091
BpuMI	CCSGG	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	303, 365, 1050
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 535
Bse1I	ACTGG	1 cut(s)	975
BseDI	CCNNGG	3 cut(s)	303, 365, 1050
BseGI	GGATG	2 cut(s)	455, 1046
BseLI	CCNNNNNNNGG	2 cut(s)	477, 535
BseMII	CTCAG	3 cut(s)	509, 852, 974
BseNI	ACTGG	1 cut(s)	975
BseSI	GKGCMC	2 cut(s)	82, 241
BseXI	GCAGC	2 cut(s)	307, 1008
BseYI	CCCAGC	1 cut(s)	524
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	2 cut(s)	211, 467
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	2 cut(s)	334, 455
BslI	CCNNNNNNNGG	2 cut(s)	477, 535
BsmAI	GTCTC	3 cut(s)	190, 498, 662
BsmFI	GGGAC	2 cut(s)	334, 455
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	82, 241
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	834
Bsp19I	CCATGG	2 cut(s)	303, 1050
BspACI	CCGC	2 cut(s)	299, 987
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	3 cut(s)	508, 853, 975
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	2 cut(s)	213, 469
BspT107I	GGYRCC	2 cut(s)	211, 467
BsrBI	CCGCTC	1 cut(s)	987
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	975
BssECI	CCNNGG	3 cut(s)	303, 365, 1050
BssMI	GATC	1 cut(s)	834
BssT1I	CCWWGG	3 cut(s)	303, 365, 1050
Bst4CI	ACNGT	4 cut(s)	446, 492, 538, 561
Bst6I	CTCTTC	1 cut(s)	752
BstAUI	TGTACA	1 cut(s)	15
BstDEI	CTNAG	4 cut(s)	159, 495, 861, 983
BstDSI	CCRYGG	2 cut(s)	303, 1050
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	2 cut(s)	455, 1046
BstKTI	GATC	1 cut(s)	837
BstMAI	GTCTC	3 cut(s)	190, 498, 662
BstMBI	GATC	1 cut(s)	834
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 305, 616, 993
BstNSI	RCATGY	1 cut(s)	852
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	2 cut(s)	82, 241
BstV1I	GCAGC	2 cut(s)	307, 1008
BstV2I	GAAGAC	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	2 cut(s)	303, 1050
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	455, 1046
CciI	TCATGA	1 cut(s)	723
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	4 cut(s)	16, 519, 539, 557
CviQI	GTAC	4 cut(s)	16, 519, 539, 557
DdeI	CTNAG	4 cut(s)	159, 495, 861, 983
DpnI	GATC	1 cut(s)	836
DpnII	GATC	1 cut(s)	834
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Eco130I	CCWWGG	3 cut(s)	303, 365, 1050
Eco47I	GGWCC	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoT14I	CCWWGG	3 cut(s)	303, 365, 1050
EcoT22I	ATGCAT	1 cut(s)	924
ErhI	CCWWGG	3 cut(s)	303, 365, 1050
FaqI	GGGAC	2 cut(s)	334, 455
FbaI	TGATCA	1 cut(s)	834
Fnu4HI	GCNGC	3 cut(s)	300, 321, 997
FokI	GGATG	2 cut(s)	442, 1033
Fsp4HI	GCNGC	3 cut(s)	300, 321, 997
FspBI	CTAG	2 cut(s)	594, 704
GluI	GCNGC	3 cut(s)	300, 321, 997
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	2 cut(s)	347, 793
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	4 cut(s)	403, 938, 1028, 1043
Hpy166II	GTNNAC	3 cut(s)	239, 691, 1025
Hpy188I	TCNGA	4 cut(s)	289, 335, 498, 984
Hpy188III	TCNNGA	2 cut(s)	386, 724
Hpy8I	GTNNAC	3 cut(s)	239, 691, 1025
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	5 cut(s)	481, 799, 814, 952, 1007
HpyCH4III	ACNGT	4 cut(s)	446, 492, 538, 561
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	5 cut(s)	194, 239, 323, 922, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 305, 616, 993
HpyF3I	CTNAG	4 cut(s)	159, 495, 861, 983
HpySE526I	ACGT	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	834
Kzo9I	GATC	1 cut(s)	834
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	4 cut(s)	123, 405, 538, 956
Lsp1109I	GCAGC	2 cut(s)	307, 1008
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	594, 704
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	3 cut(s)	341, 480, 889
MalI	GATC	1 cut(s)	836
MbiI	CCGCTC	1 cut(s)	987
MboI	GATC	1 cut(s)	834
MboII	GAAGA	7 cut(s)	59, 431, 643, 689, 769, 769, 1046
MhlI	GDGCHC	2 cut(s)	82, 241
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	490, 770
MnlI	CCTC	6 cut(s)	162, 496, 720, 922, 955, 1051
Mph1103I	ATGCAT	1 cut(s)	924
MseI	TTAA	7 cut(s)	69, 84, 429, 612, 866, 1092, 1096
MslI	CAYNNNNRTG	3 cut(s)	177, 234, 546
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	169, 305, 616, 993
NciI	CCSGG	1 cut(s)	111
NcoI	CCATGG	2 cut(s)	303, 1050
NdeII	GATC	1 cut(s)	834
NlaIV	GGNNCC	2 cut(s)	213, 469
NmuCI	GTSAC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	924
NspI	RCATGY	1 cut(s)	852
PacI	TTAATTAA	1 cut(s)	1096
PagI	TCATGA	1 cut(s)	723
PciI	ACATGT	1 cut(s)	848
PfeI	GAWTC	1 cut(s)	793
PflFI	GACNNNGTC	1 cut(s)	719
PkrI	GCNGC	3 cut(s)	301, 322, 998
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	848
PshBI	ATTAAT	2 cut(s)	69, 1092
PspFI	CCCAGC	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	213, 469
PspPI	GGNCC	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	719
RsaI	GTAC	4 cut(s)	17, 520, 540, 558
RsaNI	GTAC	4 cut(s)	16, 519, 539, 557
RseI	CAYNNNNRTG	3 cut(s)	177, 234, 546
SaqAI	TTAA	7 cut(s)	69, 84, 429, 612, 866, 1092, 1096
SatI	GCNGC	3 cut(s)	300, 321, 997
Sau3AI	GATC	1 cut(s)	834
Sau96I	GGNCC	1 cut(s)	369
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	82, 241
SfaNI	GCATC	1 cut(s)	65
SinI	GGWCC	1 cut(s)	369
SmiMI	CAYNNNNRTG	3 cut(s)	177, 234, 546
SsiI	CCGC	2 cut(s)	299, 987
SspI	AATATT	2 cut(s)	9, 1090
SspMI	CTAG	2 cut(s)	594, 704
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	3 cut(s)	303, 365, 1050
TaaI	ACNGT	4 cut(s)	446, 492, 538, 561
TaiI	ACGT	1 cut(s)	122
TatI	WGTACW	2 cut(s)	15, 556
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	793
Tru1I	TTAA	7 cut(s)	69, 84, 429, 612, 866, 1092, 1096
Tru9I	TTAA	7 cut(s)	69, 84, 429, 612, 866, 1092, 1096
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	2 cut(s)	320, 996
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	2 cut(s)	66, 891
Tth111I	GACNNNGTC	1 cut(s)	719
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	369
VspI	ATTAAT	2 cut(s)	69, 1092
XagI	CCTNNNNNAGG	1 cut(s)	475
XapI	RAATTY	6 cut(s)	35, 197, 264, 358, 461, 737
XceI	RCATGY	1 cut(s)	852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	594, 704
ZrmI	AGTACT	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.