Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Forward (+)

24394640 .. 24395605

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGACATCAATATAGTTATTCTTCATGATTTCTCTTGTAGAATGGCTTTGGAAATTGAAGAGGATTTGTCAAGTACGGGCTCAAACGCATGCACAACAACAAGGTTGAAGAGGAGATATCAAGCAGAAGAATCTGTTTCAAGCATCACTGGTTTATTGGTTCAAGAGAATAAGCGCTTGAGTCATGGGGGCAGCAATTTGTCAGCGAATACCAACTTTAAAGGAGTTGTGCTGCAGCCTAATGGCCGCTGGGGAGCTCAGATCTATGCCAAACACAATAGGGTTTGGCTTGGAACATTTGATTCTAAGGTTAAAGCAGCCATGGCTTATGATAGTGCTGCAATCAAGCTTCGCAACGGAGAGAATTGTCAAAGGAACTTTGCAGGGACCAAATTAACTGTTCAAGAGCAACACTTTCAAAATCTCTATAGCGAAGAAGCCGTGCTCAACATGATCAAGGACGGGTCTTACCAGGCTAGGTTTGTCGAATTTCTTATGGCTCACCAGGTCATGCAGAAAGTAGGAATGGCCGAGTCGAAGAACTCAGTTAGGTTGGACAGACAACTCTTTCAAAAAGAACTGACGCCAAGCGATGTTGGCACGCTGAACAGACTCGTCATACCTAAAAATTATGCTACTAAATACTTCCCTGCGCCTGATGCACAGCTCTCATTTTATGATGAAAACAACATGACATGGAACTTCAAGTACTGTTATTGGAAGAGCAGCCAAAGCTTTGTGTTCACCAAGGGTTGGAATCGGTTTGTAAAGGCTTTCAAATTGAAAGCCAATGATACTATCAGATTCTATGAGTGCCACAGTACTAGTGAAGGAGATAAGGAGGCCAAGCCATTCTACATGATTAAATTCGACAGGGCTGAAGTTGTTGAAGATGCCAAACAAGTTAATGGCGACACTAAAACAGTTAAGCTCTTCGGTGTTGTCATCGGCATAGGTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

322

Amino Acids

36.6

Weight (kDa)

8.9

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	72 - 119	8.8e-09	AP2 domain
B3	PF02362	190 - 272	1.7e-22	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	753
AciI	CCGC	1 cut(s)	247
AcoI	YGGCCR	2 cut(s)	244, 528
AcsI	RAATTY	2 cut(s)	488, 866
AcuI	CTGAAG	1 cut(s)	900
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	3 cut(s)	76, 710, 823
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	753
AhlI	ACTAGT	1 cut(s)	824
AjnI	CCWGG	2 cut(s)	471, 504
AluBI	AGCT	5 cut(s)	257, 349, 667, 735, 931
AluI	AGCT	5 cut(s)	257, 349, 667, 735, 931
Alw21I	GWGCWC	2 cut(s)	259, 447
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	3 cut(s)	244, 528, 843
ApeKI	GCWGC	6 cut(s)	192, 232, 235, 317, 338, 726
ApoI	RAATTY	2 cut(s)	488, 866
AspLEI	GCGC	2 cut(s)	177, 655
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	494, 736
AvaII	GGWCC	1 cut(s)	387
BanII	GRGCYC	2 cut(s)	83, 259
Bbv12I	GWGCWC	2 cut(s)	259, 447
BbvI	GCAGC	6 cut(s)	204, 219, 247, 325, 329, 738
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	2 cut(s)	473, 506
BclI	TGATCA	1 cut(s)	453
BcuI	ACTAGT	1 cut(s)	824
BfaI	CTAG	2 cut(s)	477, 825
BfmI	CTRYAG	2 cut(s)	233, 427
BfoI	RGCGCY	1 cut(s)	178
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	7 cut(s)	193, 233, 236, 247, 318, 339, 727
BlsI	GCNGC	7 cut(s)	194, 234, 237, 248, 319, 340, 728
BmcAI	AGTACT	2 cut(s)	710, 823
Bme1390I	CCNGG	2 cut(s)	473, 506
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	2 cut(s)	473, 506
BmsI	GCATC	3 cut(s)	153, 649, 883
BpuEI	CTTGAG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	2 cut(s)	321, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	753
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	473, 506
BseDI	CCNNGG	2 cut(s)	321, 747
BseLI	CCNNNNNNNGG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	272, 558
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	6 cut(s)	204, 219, 247, 325, 329, 738
BseYI	CCCAGC	1 cut(s)	249
BshFI	GGCC	3 cut(s)	246, 530, 845
BsiHKAI	GWGCWC	2 cut(s)	259, 447
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	753
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	246, 530, 845
Bsp1286I	GDGCHC	3 cut(s)	83, 259, 447
Bsp143I	GATC	2 cut(s)	261, 453
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	3 cut(s)	246, 530, 845
BspCNI	CTCAG	2 cut(s)	271, 557
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	237
BspQI	GCTCTTC	2 cut(s)	716, 938
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	321, 747
BssMI	GATC	2 cut(s)	261, 453
BssNI	GRCGYC	1 cut(s)	584
BssT1I	CCWWGG	2 cut(s)	321, 747
Bst2UI	CCWGG	2 cut(s)	473, 506
Bst4CI	ACNGT	4 cut(s)	400, 713, 821, 925
Bst6I	CTCTTC	4 cut(s)	54, 104, 716, 938
BstACI	GRCGYC	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	91, 602
BstDEI	CTNAG	3 cut(s)	258, 306, 544
BstDSI	CCRYGG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 655
BstKTI	GATC	2 cut(s)	264, 456
BstMBI	GATC	2 cut(s)	261, 453
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 597, 659, 732
BstNI	CCWGG	2 cut(s)	473, 506
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	471, 504
BstSFI	CTRYAG	2 cut(s)	233, 427
BstV1I	GCAGC	6 cut(s)	204, 219, 247, 325, 329, 738
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	246, 530, 845
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	91, 602
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	2 cut(s)	177, 655
Cfr13I	GGNCC	1 cut(s)	387
CseI	GACGC	1 cut(s)	592
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	75, 709, 822
CviAII	CATG	9 cut(s)	26, 90, 185, 322, 451, 511, 691, 696, 859
CviQI	GTAC	3 cut(s)	75, 709, 822
DdeI	CTNAG	3 cut(s)	258, 306, 544
DpnI	GATC	2 cut(s)	263, 455
DpnII	GATC	2 cut(s)	261, 453
DraI	TTTAAA	1 cut(s)	220
EaeI	YGGCCR	2 cut(s)	244, 528
Eam1104I	CTCTTC	4 cut(s)	54, 104, 716, 938
EarI	CTCTTC	4 cut(s)	54, 104, 716, 938
Ecl136II	GAGCTC	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	321, 747
Eco24I	GRGCYC	2 cut(s)	83, 259
Eco32I	GATATC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	387
Eco47III	AGCGCT	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	900
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	471, 504
EcoRV	GATATC	1 cut(s)	119
EcoT14I	CCWWGG	2 cut(s)	321, 747
EcoT38I	GRGCYC	2 cut(s)	83, 259
ErhI	CCWWGG	2 cut(s)	321, 747
FaeI	CATG	9 cut(s)	29, 93, 188, 325, 454, 514, 694, 699, 862
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	9 cut(s)	25, 89, 184, 321, 450, 510, 690, 695, 858
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	7 cut(s)	193, 233, 236, 247, 318, 339, 727
FriOI	GRGCYC	2 cut(s)	83, 259
Fsp4HI	GCNGC	7 cut(s)	193, 233, 236, 247, 318, 339, 727
FspBI	CTAG	2 cut(s)	477, 825
GlaI	GCGC	2 cut(s)	176, 654
GluI	GCNGC	7 cut(s)	193, 233, 236, 247, 318, 339, 727
GsaI	CCCAGC	1 cut(s)	253
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	246, 530, 845
HgaI	GACGC	1 cut(s)	592
HhaI	GCGC	2 cut(s)	177, 655
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	9 cut(s)	29, 93, 188, 325, 454, 514, 694, 699, 862
Hin6I	GCGC	2 cut(s)	175, 653
HinP1I	GCGC	2 cut(s)	175, 653
HindIII	AAGCTT	2 cut(s)	347, 733
HinfI	GANTC	7 cut(s)	131, 181, 302, 533, 612, 757, 804
HphI	GGTGA	2 cut(s)	494, 736
Hpy166II	GTNNAC	1 cut(s)	744
Hpy188I	TCNGA	2 cut(s)	261, 803
Hpy188III	TCNNGA	3 cut(s)	26, 164, 404
Hpy8I	GTNNAC	1 cut(s)	744
HpyAV	CCTTC	1 cut(s)	824
HpyCH4III	ACNGT	4 cut(s)	400, 713, 821, 925
HpyCH4V	TGCA	6 cut(s)	93, 235, 341, 383, 514, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 597, 659, 732
HpyF3I	CTNAG	3 cut(s)	258, 306, 544
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	9 cut(s)	29, 93, 188, 325, 454, 514, 694, 699, 862
HspAI	GCGC	2 cut(s)	175, 653
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	261, 453
LguI	GCTCTTC	2 cut(s)	716, 938
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	6 cut(s)	204, 219, 247, 325, 329, 738
LweI	GCATC	3 cut(s)	153, 649, 883
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	2 cut(s)	477, 825
MalI	GATC	2 cut(s)	263, 455
MboI	GATC	2 cut(s)	261, 453
MboII	GAAGA	9 cut(s)	14, 71, 121, 140, 446, 550, 733, 902, 925
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	83, 259, 447
MluCI	AATT	8 cut(s)	54, 196, 364, 392, 488, 628, 779, 866
MlyI	GAGTC	3 cut(s)	190, 542, 606
MmeI	TCCRAC	2 cut(s)	534, 734
MnlI	CCTC	3 cut(s)	55, 105, 835
MseI	TTAA	6 cut(s)	219, 312, 395, 864, 906, 927
MspA1I	CMGCKG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	473, 506
MvaI	CCWGG	2 cut(s)	473, 506
MwoI	GCNNNNNNNGC	4 cut(s)	323, 597, 659, 732
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	261, 453
NlaIII	CATG	9 cut(s)	29, 93, 188, 325, 454, 514, 694, 699, 862
NlaIV	GGNNCC	1 cut(s)	388
NmeAIII	GCCGAG	1 cut(s)	556
NspI	RCATGY	1 cut(s)	93
PaeI	GCATGC	1 cut(s)	93
PagI	TCATGA	1 cut(s)	25
PciSI	GCTCTTC	2 cut(s)	716, 938
PfeI	GAWTC	4 cut(s)	131, 302, 757, 804
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	7 cut(s)	194, 234, 237, 248, 319, 340, 728
PleI	GAGTC	3 cut(s)	189, 541, 606
PpsI	GAGTC	3 cut(s)	189, 541, 606
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	471, 504
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	471, 504
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	387
PsrI	GAACNNNNNNTAC	2 cut(s)	692, 724
PstI	CTGCAG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	3 cut(s)	76, 710, 823
RsaNI	GTAC	3 cut(s)	75, 709, 822
SacI	GAGCTC	1 cut(s)	259
SapI	GCTCTTC	2 cut(s)	716, 938
SaqAI	TTAA	6 cut(s)	219, 312, 395, 864, 906, 927
SatI	GCNGC	7 cut(s)	193, 233, 236, 247, 318, 339, 727
Sau3AI	GATC	2 cut(s)	261, 453
Sau96I	GGNCC	1 cut(s)	387
ScaI	AGTACT	2 cut(s)	710, 823
SchI	GAGTC	3 cut(s)	190, 542, 606
ScrFI	CCNGG	2 cut(s)	473, 506
SduI	GDGCHC	3 cut(s)	83, 259, 447
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	3 cut(s)	153, 649, 883
SfcI	CTRYAG	2 cut(s)	233, 427
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SpeI	ACTAGT	1 cut(s)	824
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	8 cut(s)	54, 196, 364, 392, 488, 628, 779, 866
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	477, 825
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	471, 504
StyI	CCWWGG	2 cut(s)	321, 747
TaaI	ACNGT	4 cut(s)	400, 713, 821, 925
TaqI	TCGA	3 cut(s)	486, 536, 870
TasI	AATT	8 cut(s)	54, 196, 364, 392, 488, 628, 779, 866
TatI	WGTACW	2 cut(s)	708, 821
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	4 cut(s)	131, 302, 757, 804
Tru1I	TTAA	6 cut(s)	219, 312, 395, 864, 906, 927
Tru9I	TTAA	6 cut(s)	219, 312, 395, 864, 906, 927
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	6 cut(s)	192, 232, 235, 317, 338, 726
TspDTI	ATGAA	2 cut(s)	14, 696
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	2 cut(s)	488, 866
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	2 cut(s)	477, 825
ZrmI	AGTACT	2 cut(s)	710, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.