Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Reverse (-)

23900186 .. 23901146

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0229700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAAACGGCCAGAAAAAGAGCTCCTCCGGCGACACATTCTCCTTCCCGAGCACACCGGTCCGCGACCAAGACTTCGAATTCGGCTGCTACACACCCGACTCTGCCTCCAGTGACCCCTGCAAGGACTCCCCAGCAGACCATTTGTTCTTCAATGGCAAACTCCTACCTCATGCCTTCCCTTTTCAACCAAACAATAATGGCATGCTACTTGTCGTTGATCACTCTCGTCGCACAAGCCGAACGAACAGCATTAGCAGCAAGGACTCGCTTTCGCTCATGTCCTCAAGAAGCAATAGCACTAACAGTAGAAGCAGCACTAGCAGTTGCAGCAGCAGCGCAAGGACAAGTTCAAGTGACAATTCTGAGAGGAAGTTGATGCATCATCATCACTACAGCAGAACGACACCGTTTAGATCATCGGACAGATACAAAACCGGAGGTGGTGCACAACTTTATGGATCTTCTCAGAGATGGCAATTCATAACACCTGTGCCGACTTTAAGCCGGGACACTTCAGTTAAGAAGAAAGTGGAGATTGCTGCAGCTGGGAAAGGAAAACCCAACAAAGCAAAGAAGAAAAGGAAGGTGAAGACGGTTGTGGTCCGGCGCCGGAGGCTCTGCCGGAGGTTTTTCCGATGGCTGGTTTCGGCCTGCATAAAGTGTCACGCAATGGAGCCATCCAAGAAAAGTGATGTTGTTGATCATGTAAAAGATGGGAATCATGTGAAGCTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

246

Amino Acids

27.52

Weight (kDa)

10.23

Isoelectric Point (pI)

66.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	609
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	124, 643
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	154, 188, 354
AluBI	AGCT	3 cut(s)	24, 548, 733
AluI	AGCT	3 cut(s)	24, 548, 733
Alw21I	GWGCWC	3 cut(s)	26, 56, 451
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	10, 651
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	8 cut(s)	87, 258, 315, 330, 333, 336, 542, 545
ApoI	RAATTY	1 cut(s)	80
ArsI	GACNNNNNNTTYG	4 cut(s)	59, 65, 91, 97
AsiGI	ACCGGT	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	341, 612
AspS9I	GGNCC	2 cut(s)	61, 604
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	601
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	61, 604
BaeGI	GKGCMC	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	3 cut(s)	26, 56, 451
BbvI	GCAGC	8 cut(s)	74, 270, 327, 342, 345, 348, 529, 557
BccI	CCATC	4 cut(s)	468, 633, 688, 710
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	2 cut(s)	220, 703
BcnI	CCSGG	1 cut(s)	509
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	2 cut(s)	394, 543
BfoI	RGCGCY	1 cut(s)	613
BisI	GCNGC	8 cut(s)	88, 259, 316, 331, 334, 337, 543, 546
BlsI	GCNGC	8 cut(s)	89, 260, 317, 332, 335, 338, 544, 547
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	2 cut(s)	61, 604
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	61, 604
BmiI	GGNNCC	2 cut(s)	611, 678
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	2 cut(s)	369, 391
BpiI	GAAGAC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	610
BsaWI	WCCGGW	2 cut(s)	58, 437
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 643
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	720
BseGI	GGATG	1 cut(s)	680
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	124, 643
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	2 cut(s)	357, 482
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	8 cut(s)	74, 270, 327, 342, 345, 348, 529, 557
BseYI	CCCAGC	2 cut(s)	133, 548
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	12, 653
BshNI	GGYRCC	1 cut(s)	609
BshTI	ACCGGT	1 cut(s)	58
BsiHKAI	GWGCWC	3 cut(s)	26, 56, 451
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	7 cut(s)	30, 59, 438, 508, 607, 613, 625
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	124, 643
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	12, 653
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	26, 56, 451
Bsp143I	GATC	4 cut(s)	220, 416, 461, 703
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	12, 653
BspCNI	CTCAG	2 cut(s)	358, 481
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	611, 678
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	469
BspT104I	TTCGAA	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	4 cut(s)	220, 416, 461, 703
BssNI	GRCGYC	1 cut(s)	610
Bst4CI	ACNGT	3 cut(s)	308, 411, 598
BstACI	GRCGYC	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	206, 655
BstDEI	CTNAG	2 cut(s)	366, 468
BstF5I	GGATG	1 cut(s)	680
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	613
BstHHI	GCGC	2 cut(s)	341, 612
BstKTI	GATC	4 cut(s)	223, 419, 464, 706
BstMBI	GATC	4 cut(s)	220, 416, 461, 703
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 258, 321, 330, 336, 616
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	394, 543
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	8 cut(s)	74, 270, 327, 342, 345, 348, 529, 557
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	12, 653
BtsCI	GGATG	1 cut(s)	680
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	206, 655
CfoI	GCGC	2 cut(s)	341, 612
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	61, 604
CpoI	CGGWCCG	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	58
CspI	CGGWCCG	1 cut(s)	61
CviAII	CATG	5 cut(s)	173, 205, 280, 707, 725
DdeI	CTNAG	2 cut(s)	366, 468
DinI	GGCGCC	1 cut(s)	611
DpnI	GATC	4 cut(s)	222, 418, 463, 705
DpnII	GATC	4 cut(s)	220, 416, 461, 703
EaeI	YGGCCR	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	61, 604
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	26
EgeI	GGCGCC	1 cut(s)	611
EheI	GGCGCC	1 cut(s)	611
FaeI	CATG	5 cut(s)	176, 208, 283, 710, 728
FaiI	YATR	8 cut(s)	174, 206, 281, 459, 485, 659, 708, 726
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	5 cut(s)	172, 204, 279, 706, 724
FbaI	TGATCA	2 cut(s)	220, 703
Fnu4HI	GCNGC	8 cut(s)	88, 259, 316, 331, 334, 337, 543, 546
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	8 cut(s)	88, 259, 316, 331, 334, 337, 543, 546
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	2 cut(s)	340, 611
GluI	GCNGC	8 cut(s)	88, 259, 316, 331, 334, 337, 543, 546
GsaI	CCCAGC	2 cut(s)	137, 552
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	12, 653
HapII	CCGG	7 cut(s)	30, 59, 438, 508, 607, 613, 625
HhaI	GCGC	2 cut(s)	341, 612
Hin1I	GRCGYC	1 cut(s)	610
Hin1II	CATG	5 cut(s)	176, 208, 283, 710, 728
Hin6I	GCGC	2 cut(s)	339, 610
HinP1I	GCGC	2 cut(s)	339, 610
HinfI	GANTC	4 cut(s)	101, 128, 266, 721
HpaII	CCGG	7 cut(s)	30, 59, 438, 508, 607, 613, 625
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	367, 424, 471, 638
Hpy188III	TCNNGA	2 cut(s)	49, 288
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	3 cut(s)	55, 187, 580
HpyCH4III	ACNGT	3 cut(s)	308, 411, 598
HpyCH4V	TGCA	6 cut(s)	123, 330, 382, 449, 545, 657
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 258, 321, 330, 336, 616
HpyF3I	CTNAG	2 cut(s)	366, 468
Hsp92I	GRCGYC	1 cut(s)	610
Hsp92II	CATG	5 cut(s)	176, 208, 283, 710, 728
HspAI	GCGC	2 cut(s)	339, 610
KasI	GGCGCC	1 cut(s)	609
Ksp22I	TGATCA	2 cut(s)	220, 703
Kzo9I	GATC	4 cut(s)	220, 416, 461, 703
LmnI	GCTCC	2 cut(s)	29, 676
Lsp1109I	GCAGC	8 cut(s)	74, 270, 327, 342, 345, 348, 529, 557
LweI	GCATC	2 cut(s)	369, 391
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	113, 356, 665
MalI	GATC	4 cut(s)	222, 418, 463, 705
MboI	GATC	4 cut(s)	220, 416, 461, 703
MboII	GAAGA	5 cut(s)	142, 456, 538, 589, 604
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	3 cut(s)	26, 56, 451
MluCI	AATT	3 cut(s)	80, 361, 479
Mly113I	GGCGCC	1 cut(s)	610
MlyI	GAGTC	3 cut(s)	95, 122, 260
MnlI	CCTC	8 cut(s)	37, 118, 180, 295, 363, 434, 609, 621
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	2 cut(s)	503, 522
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	7 cut(s)	30, 59, 438, 508, 607, 613, 625
MspR9I	CCNGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	6 cut(s)	30, 258, 321, 330, 336, 616
NarI	GGCGCC	1 cut(s)	610
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	4 cut(s)	220, 416, 461, 703
NlaIII	CATG	5 cut(s)	176, 208, 283, 710, 728
NlaIV	GGNNCC	2 cut(s)	611, 678
NmuCI	GTSAC	3 cut(s)	113, 356, 665
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	721
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	8 cut(s)	89, 260, 317, 332, 335, 338, 544, 547
PleI	GAGTC	3 cut(s)	95, 122, 260
PluTI	GGCGCC	1 cut(s)	613
PpsI	GAGTC	3 cut(s)	95, 122, 260
Psp124BI	GAGCTC	1 cut(s)	26
PspFI	CCCAGC	2 cut(s)	133, 548
PspN4I	GGNNCC	2 cut(s)	611, 678
PspPI	GGNCC	2 cut(s)	61, 604
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	548
Rsr2I	CGGWCCG	1 cut(s)	61
RsrII	CGGWCCG	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	503, 522
SatI	GCNGC	8 cut(s)	88, 259, 316, 331, 334, 337, 543, 546
Sau3AI	GATC	4 cut(s)	220, 416, 461, 703
Sau96I	GGNCC	2 cut(s)	61, 604
SchI	GAGTC	3 cut(s)	95, 122, 260
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	3 cut(s)	26, 56, 451
SetI	ASST	8 cut(s)	26, 172, 445, 493, 550, 591, 632, 735
SfaNI	GCATC	2 cut(s)	369, 391
SfcI	CTRYAG	2 cut(s)	394, 543
SfoI	GGCGCC	1 cut(s)	611
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	2 cut(s)	61, 604
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	80, 361, 479
SsiI	CCGC	1 cut(s)	64
SspDI	GGCGCC	1 cut(s)	609
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	308, 411, 598
TaqI	TCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	80, 361, 479
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	2 cut(s)	503, 522
Tru9I	TTAA	2 cut(s)	503, 522
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	3 cut(s)	113, 356, 665
TseI	GCWGC	8 cut(s)	87, 258, 315, 330, 333, 336, 542, 545
Tsp45I	GTSAC	3 cut(s)	113, 356, 665
TspDTI	ATGAA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	61, 604
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.