Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002213

Physical Location & Seq

Genomic Coordinates Reverse (-)

39596679 .. 39597782

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG344200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTATGGAAATGGAAGAGGATTTGTCAAGCATGGTATCAAACGCAGGCACAACAACAAGGCAGAAGAGGACATATCAAGCAGAAGCTTCTGTTTCAAGCATCACTGGTTTCTTGGTCCAAGAGAGTAAGCGCTTGAGTCATGGGAGCAGCAATTTGTCTGCCAATACCAAATTTAAAGGAGTTGTACTGCAACAAAATGGCCACTGGGGTGCTCAGATCTATGCCAATCACAATAGGGTTTGGCTTGGAACATTCAATTCTGAGGTGGATGCAGCCATGGCTTATGATAGTGCTGCAATCAAGCTTCGCAACGGAGAGTGCCAAAGGAACTTTGCATGGACCAAGGTCACTGATCAAGAGCCATACTTTCAGAATCACTATAGCCAAGAAGCTGTTCTCAACATGATCAAGGACGGGACTTACCAGGCTAGGTTTTTAGAATTTCGCATGTCTCGCCAGGCAGCAGAAAGTATGCAAAAAATAGGAATGGCCGAGTGTAACTCAGCTAGGGTGCAACAAAGCAAAAGAGATATCTTGCACAAACAACTCTTCCAAAAAGAGCTGACGCCAAGCGATGTTGGTAAGCTGAACAGACTTGTCATACCCAAAAATTATGCAACTAAATACTTCCCTCGTATTGATGAATCCATGCAGGGAGGATTGGATGACGACCCGGCTCCTGATGTGCAGCTGTCATTTTATGATGAAAACATGAGGCCATGGAAGTTCAGGTACTGTTATTGGAAGAGCAGCCAAAGCTTTGTGTTCACCCGGGGTTGGAATCGGTTTGTAAAGGAGAGTCTTTTGAAAGCCAATGACATTATCAGGTTCTATGAGTGCCACATTAGGGAAGGAGACAAGGAGGCCAAGTCATTCTACATGATTAAAATCGACCGGGCTGAAAGTTCTGATGTTATTGTTGAAAATGCTGGCCTATGTGTTTCCCCCGCCCTTACCCCCTTGCATGCCAAGAAATTTGGAGAGGAGAAAGATGACATAAAGACGCAAATTGCAGAGGTTATTGATGAAACGCCACAAGTTAATGGTGATAATAAAAGAATTAGGCTCTTTGGTGTTTGTATGGTCGTAGGTGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

367

Amino Acids

42.0

Weight (kDa)

7.6

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	57 - 105	1.9e-06	AP2 domain
B3	PF02362	185 - 284	7.4e-21	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50680 AT1G51120
fragaria_vesca	FvH4_3g44200 FvH4_5g30960 FvH4_5g33680
malus_domestica	MD02G1009000.v1.1 MD03G1016500.v1.1 MD11G1017200.v1.1 MD15G1154300.v1.1
prunus_persica	Prupe.6G015000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1 Prupe.7G261000_v2.0.a1
pyrus_communis	pycom03g01420
rosa_chinensis	RchiOBHm_Chr5g0046591 RchiOBHm_Chr5g0080541 RchiOBHm_Chr7g0232691
rosa_laevigata	RLG00000001316 RLG00000034419 RLG00000036866
rosa_multiflora	Rmu_sc0000359.1_g000010 Rmu_sc0002147.1_g000014 Rmu_sc0003878.1_g000030
rosa_roxburghii	Rroxscaffold_1G00002850 Rroxscaffold_1G00034770 Rroxscaffold_5G00381100
rosa_rugosa	Rorug05G0229700 Rorug05G0469700
rosa_samantha	Rh5AG310200 Rh5AG523400 Rh5BG318500 Rh5BG545400 Rh5CG344200 Rh5CG568600 Rh5DG328900 Rh5DG555600 Rh7AG430500 Rh7CG449300
rosa_wichuraiana	Rw0G023150 Rw5G028920 Rw5G048570 Rw7G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	951
AcoI	YGGCCR	2 cut(s)	202, 492
AcsI	RAATTY	3 cut(s)	173, 443, 977
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	2 cut(s)	189, 737
AfeI	AGCGCT	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	780, 850
AgsI	TTSAA	4 cut(s)	99, 259, 811, 926
AjnI	CCWGG	2 cut(s)	426, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	8 cut(s)	89, 307, 395, 509, 565, 589, 694, 762
AluI	AGCT	8 cut(s)	89, 307, 395, 509, 565, 589, 694, 762
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	459, 852
AlwNI	CAGNNNCTG	1 cut(s)	738
Ama87I	CYCGRG	1 cut(s)	774
Aor51HI	AGCGCT	1 cut(s)	134
AoxI	GGCC	5 cut(s)	202, 492, 719, 867, 934
ApeKI	GCWGC	6 cut(s)	150, 275, 296, 464, 691, 753
ApoI	RAATTY	3 cut(s)	173, 443, 977
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	118, 342
AsuC2I	CCSGG	4 cut(s)	677, 775, 776, 899
AsuHPI	GGTGA	2 cut(s)	763, 1061
AvaI	CYCGRG	1 cut(s)	774
AvaII	GGWCC	2 cut(s)	118, 342
BalI	TGGCCA	1 cut(s)	204
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	6 cut(s)	162, 283, 287, 476, 703, 765
BciT130I	CCWGG	2 cut(s)	428, 461
BclI	TGATCA	2 cut(s)	355, 408
BcnI	CCSGG	4 cut(s)	677, 775, 776, 899
BcoDI	GTCTC	2 cut(s)	459, 852
BfaI	CTAG	2 cut(s)	432, 510
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	1 cut(s)	136
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	6 cut(s)	151, 276, 297, 465, 692, 754
BlsI	GCNGC	6 cut(s)	152, 277, 298, 466, 693, 755
Bme1390I	CCNGG	6 cut(s)	428, 461, 677, 775, 776, 899
Bme18I	GGWCC	2 cut(s)	118, 342
BmeT110I	CYCGRG	1 cut(s)	774
BmgT120I	GGNCC	2 cut(s)	118, 342
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	6 cut(s)	428, 461, 677, 775, 776, 899
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	2 cut(s)	111, 262
BmuI	ACTGGG	1 cut(s)	217
BoxI	GACNNNNGTC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	4 cut(s)	677, 775, 776, 899
BsaBI	GATNNNNATC	1 cut(s)	890
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	5 cut(s)	279, 345, 722, 774, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	780, 850
Bse1I	ACTGG	2 cut(s)	112, 212
Bse8I	GATNNNNATC	1 cut(s)	890
BseBI	CCWGG	2 cut(s)	428, 461
BseDI	CCNNGG	5 cut(s)	279, 345, 722, 774, 775
BseGI	GGATG	2 cut(s)	277, 673
BseJI	GATNNNNATC	1 cut(s)	890
BseLI	CCNNNNNNNGG	2 cut(s)	780, 850
BseMII	CTCAG	3 cut(s)	230, 255, 519
BseNI	ACTGG	2 cut(s)	112, 212
BseRI	GAGGAG	1 cut(s)	1001
BseXI	GCAGC	6 cut(s)	162, 283, 287, 476, 703, 765
BsgI	GTGCAG	1 cut(s)	710
Bsh1285I	CGRYCG	1 cut(s)	898
BshFI	GGCC	5 cut(s)	204, 494, 721, 869, 936
BsiEI	CGRYCG	1 cut(s)	898
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	774
BsiSI	CCGG	3 cut(s)	677, 775, 898
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	780, 850
BsmAI	GTCTC	2 cut(s)	459, 852
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	5 cut(s)	204, 494, 721, 869, 936
BsoBI	CYCGRG	1 cut(s)	774
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	219, 355, 408
Bsp19I	CCATGG	2 cut(s)	279, 722
BspACI	CCGC	1 cut(s)	951
BspANI	GGCC	5 cut(s)	204, 494, 721, 869, 936
BspCNI	CTCAG	3 cut(s)	229, 256, 518
BspLI	GGNNCC	1 cut(s)	681
BspQI	GCTCTTC	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	112, 212
BssECI	CCNNGG	5 cut(s)	279, 345, 722, 774, 775
BssMI	GATC	3 cut(s)	219, 355, 408
BssNI	GRCGYC	1 cut(s)	569
BssT1I	CCWWGG	3 cut(s)	279, 345, 722
Bst2UI	CCWGG	2 cut(s)	428, 461
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	4 cut(s)	12, 62, 557, 743
BstACI	GRCGYC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	49, 934, 969
BstDEI	CTNAG	3 cut(s)	216, 264, 505
BstDSI	CCRYGG	2 cut(s)	279, 722
BstF5I	GGATG	2 cut(s)	277, 673
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	222, 358, 411
BstMAI	GTCTC	2 cut(s)	459, 852
BstMBI	GATC	3 cut(s)	219, 355, 408
BstMCI	CGRYCG	1 cut(s)	898
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 456, 759
BstNI	CCWGG	2 cut(s)	428, 461
BstNSI	RCATGY	2 cut(s)	454, 971
BstPAI	GACNNNNGTC	1 cut(s)	347
BstSCI	CCNGG	6 cut(s)	426, 459, 675, 773, 774, 897
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	6 cut(s)	162, 283, 287, 476, 703, 765
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	5 cut(s)	204, 494, 721, 869, 936
BtgI	CCRYGG	2 cut(s)	279, 722
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	277, 673
BtsIMutI	CAGTG	3 cut(s)	105, 205, 351
Cac8I	GCNNGC	3 cut(s)	49, 934, 969
CaiI	CAGNNNCTG	1 cut(s)	738
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	118, 342
Cfr9I	CCCGGG	1 cut(s)	774
CseI	GACGC	2 cut(s)	577, 1015
Csp6I	GTAC	2 cut(s)	188, 736
CviQI	GTAC	2 cut(s)	188, 736
DdeI	CTNAG	3 cut(s)	216, 264, 505
DpnI	GATC	3 cut(s)	221, 357, 410
DpnII	GATC	3 cut(s)	219, 355, 408
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	2 cut(s)	202, 492
Eam1104I	CTCTTC	4 cut(s)	12, 62, 557, 743
EarI	CTCTTC	4 cut(s)	12, 62, 557, 743
Eco130I	CCWWGG	3 cut(s)	279, 345, 722
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	2 cut(s)	118, 342
Eco47III	AGCGCT	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	774
EcoRII	CCWGG	2 cut(s)	426, 459
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	3 cut(s)	279, 345, 722
ErhI	CCWWGG	3 cut(s)	279, 345, 722
FaqI	GGGAC	1 cut(s)	433
FauI	CCCGC	1 cut(s)	958
FbaI	TGATCA	2 cut(s)	355, 408
Fnu4HI	GCNGC	6 cut(s)	151, 276, 297, 465, 692, 754
FokI	GGATG	2 cut(s)	284, 680
Fsp4HI	GCNGC	6 cut(s)	151, 276, 297, 465, 692, 754
FspBI	CTAG	2 cut(s)	432, 510
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	6 cut(s)	151, 276, 297, 465, 692, 754
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	5 cut(s)	204, 494, 721, 869, 936
HapII	CCGG	3 cut(s)	677, 775, 898
HgaI	GACGC	2 cut(s)	577, 1015
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	569
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HindIII	AAGCTT	3 cut(s)	87, 305, 760
HinfI	GANTC	5 cut(s)	139, 376, 647, 784, 802
HpaII	CCGG	3 cut(s)	677, 775, 898
HphI	GGTGA	2 cut(s)	763, 1061
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	4 cut(s)	219, 265, 375, 913
Hpy188III	TCNNGA	2 cut(s)	359, 683
Hpy8I	GTNNAC	1 cut(s)	771
HpyAV	CCTTC	1 cut(s)	848
HpyCH4III	ACNGT	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 456, 759
HpyF3I	CTNAG	3 cut(s)	216, 264, 505
Hsp92I	GRCGYC	1 cut(s)	569
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	2 cut(s)	355, 408
Kzo9I	GATC	3 cut(s)	219, 355, 408
LguI	GCTCTTC	1 cut(s)	743
LmnI	GCTCC	2 cut(s)	147, 685
Lsp1109I	GCAGC	6 cut(s)	162, 283, 287, 476, 703, 765
LweI	GCATC	2 cut(s)	111, 262
MaeI	CTAG	2 cut(s)	432, 510
MaeIII	GTNAC	2 cut(s)	349, 500
MalI	GATC	3 cut(s)	221, 357, 410
MboI	GATC	3 cut(s)	219, 355, 408
MboII	GAAGA	4 cut(s)	29, 79, 544, 760
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	9 cut(s)	154, 173, 259, 443, 613, 977, 1011, 1062, 1099
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	148, 811
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	9 cut(s)	13, 63, 259, 645, 653, 711, 859, 979, 1012
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	4 cut(s)	177, 888, 1044, 1102
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	694
MspI	CCGG	3 cut(s)	677, 775, 898
MspR9I	CCNGG	6 cut(s)	428, 461, 677, 775, 776, 899
MvaI	CCWGG	2 cut(s)	428, 461
MwoI	GCNNNNNNNGC	3 cut(s)	281, 456, 759
NciI	CCSGG	4 cut(s)	677, 775, 776, 899
NcoI	CCATGG	2 cut(s)	279, 722
NdeII	GATC	3 cut(s)	219, 355, 408
NlaIV	GGNNCC	1 cut(s)	681
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	2 cut(s)	454, 971
OliI	CACNNNNGTG	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	743
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	376, 647, 784
PkrI	GCNGC	6 cut(s)	152, 277, 298, 466, 693, 755
PleI	GAGTC	2 cut(s)	147, 810
PpsI	GAGTC	2 cut(s)	147, 810
PshAI	GACNNNNGTC	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	426, 459
PspGI	CCWGG	2 cut(s)	426, 459
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	2 cut(s)	118, 342
PstNI	CAGNNNCTG	1 cut(s)	738
PsuI	RGATCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	694
RsaI	GTAC	2 cut(s)	189, 737
RsaNI	GTAC	2 cut(s)	188, 736
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	743
SaqAI	TTAA	4 cut(s)	177, 888, 1044, 1102
SatI	GCNGC	6 cut(s)	151, 276, 297, 465, 692, 754
Sau3AI	GATC	3 cut(s)	219, 355, 408
Sau96I	GGNCC	2 cut(s)	118, 342
SchI	GAGTC	2 cut(s)	148, 811
ScrFI	CCNGG	6 cut(s)	428, 461, 677, 775, 776, 899
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	2 cut(s)	111, 262
SfcI	CTRYAG	1 cut(s)	382
SinI	GGWCC	2 cut(s)	118, 342
SmaI	CCCGGG	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SphI	GCATGC	1 cut(s)	971
Sse9I	AATT	9 cut(s)	154, 173, 259, 443, 613, 977, 1011, 1062, 1099
SsiI	CCGC	1 cut(s)	951
SspMI	CTAG	2 cut(s)	432, 510
StyD4I	CCNGG	6 cut(s)	426, 459, 675, 773, 774, 897
StyI	CCWWGG	3 cut(s)	279, 345, 722
TaaI	ACNGT	1 cut(s)	740
TaqI	TCGA	1 cut(s)	894
TasI	AATT	9 cut(s)	154, 173, 259, 443, 613, 977, 1011, 1062, 1099
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	3 cut(s)	376, 647, 784
Tru1I	TTAA	4 cut(s)	177, 888, 1044, 1102
Tru9I	TTAA	4 cut(s)	177, 888, 1044, 1102
TscAI	CASTG	3 cut(s)	112, 212, 358
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	6 cut(s)	150, 275, 296, 464, 691, 753
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	660, 723, 1044
TspGWI	ACGGA	1 cut(s)	330
TspMI	CCCGGG	1 cut(s)	774
TspRI	CASTG	3 cut(s)	112, 212, 358
VpaK11BI	GGWCC	2 cut(s)	118, 342
XapI	RAATTY	3 cut(s)	173, 443, 977
XceI	RCATGY	2 cut(s)	454, 971
XmaI	CCCGGG	1 cut(s)	774
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	2 cut(s)	432, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.