AT1G64820

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
24088605 .. 24090558
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64820.1

Sequence Viewer

Length: 1509 bp
ATGGAAACGGATTTCTCGTTGGTGCGTAAGGAGGAGGAAGAAGAAGAAGATAACAGGAATGGGATGAGTTATTTGTCAATGGAGATGATGAAGAAGGTGAGCTCCATGGCGGCTCCAATGGTGGCAGTTTCGGTTTCTCAATTCCTCCTTCAAGTCATCTCCATGGTTATGGCTGGTCATTTGGACGAGCTCTCGCTCTCAGCTGTCGCAATTGCCACTTCCCTCACCAATGTCACTGGTTTCAGCCTCATCGTTGGGTTTGCAGGTGCGTTAGACACTCTTTGCGGTCAAGCTTTTGGAGCAGAACAATTTGGAAAAATTGGTGCATACACTTACAGCTCAATGCTCTGTCTTCTCGTTTTCTGTTTTTCAATCTCTATCGTATGGTTTTTCATGGACAAGCTCTTGGAGATTTTCCATCAAGATCCTCTCATCTCTCAATTAGCTTGCAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATTCACTCTTCTTCAACCTATGACTCGGTATTTCCAGTCACAAGGAATAACTCTTCCTCTCTTCGTGAGCTCTCTTGGAGCTCTTTGTTTTCACATTCCTTTCTGTTGGCTTCTTGTCTATAAACTGAAATTTGGAATAGTTGGCGCCGCTTTGTCCATCGGTTTTTCATATTGGCTCAACGTATTTTTGCTTTGGATTTTCATGAGATACTCTGCTTTGCATCGTGAAATGAAGAATCTTGGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCGATCCCCTCTGCAATGATGATATGCCTGGAATGGTGGTCGTTTGAGATTCTACTACTAATGTCTGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACATCGGCTGTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACACATGTCTCAAACGAGCTAGGAGCTGGAAATCATAGGGCAGCTCGAGCCGCGGTTAATTCTGCCATTTTCCTTGGTGGTGTTGGTGCATTAATAACAACCATCACACTTTACAGTTACCGAAAAAGTTGGGGTTATGTATTCAGCAACGAGAGAGAAGTGGTTCGCTACGCAACCCAAATCACACCCATTCTCTGCCTATCCATTTTCGTTAACAGCTTTCTCGCCGTGCTCTCAGGGGTTGCCAGAGGATCAGGGTGGCAACGTATAGGAGGTTATGCAAGCTTAGGATCATATTATCTTGTCGGAATCCCGTTAGGATGGTTCTTGTGTTTTGTCATGAAATTGAGAGGGAAAGGACTTTGGATTGGTATACTCATAGCCTCCACTATCCAACTCATTGTTTTTGCTCTTGTCACCTTCTTCACCAATTGGGAACAAGAGGCAACGAAAGCTAGAGACAGAGTATTCGAGATGACACCTCAAGTCAAAGGCAACCAAAAAACACAAATTATAGTAGAAGAGGATACACAAGTTTTACTTAATCATATTGCAGAAACTGTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

55.71

Weight (kDa)

6.71

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 39 - 199 2.3e-31 MatE
MatE PF01554 260 - 422 4.5e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 629
AccI GTMKAC 1 cut(s) 1315
AccII CGCG 2 cut(s) 773, 995
AciI CCGC 6 cut(s) 110, 285, 633, 936, 993, 995
AclWI GGATC 4 cut(s) 419, 769, 1201, 1240
AcsI RAATTY 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 630
AflIII ACRYGT 1 cut(s) 946
AgsI TTSAA 3 cut(s) 152, 372, 500
AjnI CCWGG 1 cut(s) 798
Alw21I GWGCWC 5 cut(s) 104, 192, 557, 568, 1176
Alw26I GTCTC 2 cut(s) 955, 1395
AlwI GGATC 4 cut(s) 419, 769, 1201, 1240
AlwNI CAGNNNCTG 1 cut(s) 1502
Ama87I CYCGRG 2 cut(s) 745, 987
ApeKI GCWGC 1 cut(s) 983
ApoI RAATTY 1 cut(s) 614
ArsI GACNNNNNNTTYG 2 cut(s) 1394, 1426
AseI ATTAAT 1 cut(s) 1034
Asp700I GAANNNNTTC 2 cut(s) 758, 1104
AspLEI GCGC 1 cut(s) 632
AsuHPI GGTGA 6 cut(s) 109, 217, 883, 928, 1351, 1360
AvaI CYCGRG 2 cut(s) 745, 987
BaeI ACNNNNGTAYC 2 cut(s) 1461, 1494
BanI GGYRCC 1 cut(s) 629
BanII GRGCYC 4 cut(s) 104, 192, 557, 568
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 5 cut(s) 104, 192, 557, 568, 1176
BbvI GCAGC 1 cut(s) 995
BccI CCATC 4 cut(s) 426, 650, 1052, 1257
BceAI ACGGC 1 cut(s) 1154
BciT130I CCWGG 1 cut(s) 800
BciVI GTATCC 1 cut(s) 1462
BcoDI GTCTC 2 cut(s) 955, 1395
BfaI CTAG 2 cut(s) 962, 1398
BfoI RGCGCY 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 254
BfuI GTATCC 1 cut(s) 1462
BisI GCNGC 4 cut(s) 111, 633, 984, 993
BlsI GCNGC 4 cut(s) 112, 634, 985, 994
Bme1390I CCNGG 1 cut(s) 800
BmeT110I CYCGRG 2 cut(s) 745, 987
BmiI GGNNCC 2 cut(s) 114, 631
BmrFI CCNGG 1 cut(s) 800
BmsI GCATC 2 cut(s) 715, 941
BpiI GAAGAC 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 1228
BpuEI CTTGAG 1 cut(s) 1410
BsaHI GRCGYC 1 cut(s) 630
BsaJI CCNNGG 4 cut(s) 105, 162, 993, 1015
Bse118I RCCGGY 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 241, 520
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 1 cut(s) 800
BseDI CCNNGG 4 cut(s) 105, 162, 993, 1015
BseGI GGATG 3 cut(s) 69, 932, 1268
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 2 cut(s) 213, 1191
BseNI ACTGG 2 cut(s) 241, 520
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 995
Bsh1236I CGCG 2 cut(s) 773, 995
BshNI GGYRCC 1 cut(s) 629
BsiHKAI GWGCWC 5 cut(s) 104, 192, 557, 568, 1176
BsiHKCI CYCGRG 2 cut(s) 745, 987
BsiSI CCGG 1 cut(s) 473
BsmAI GTCTC 2 cut(s) 955, 1395
BsmI GAATGC 1 cut(s) 925
BsoBI CYCGRG 2 cut(s) 745, 987
Bsp1286I GDGCHC 5 cut(s) 104, 192, 557, 568, 1176
Bsp143I GATC 4 cut(s) 424, 774, 1193, 1232
Bsp19I CCATGG 2 cut(s) 105, 162
Bsp68I TCGCGA 1 cut(s) 773
BspACI CCGC 6 cut(s) 110, 285, 633, 936, 993, 995
BspCNI CTCAG 2 cut(s) 212, 1190
BspFNI CGCG 2 cut(s) 773, 995
BspHI TCATGA 2 cut(s) 687, 1281
BspLI GGNNCC 2 cut(s) 114, 631
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 4 cut(s) 419, 769, 1201, 1240
BspT107I GGYRCC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 792
BsrFI RCCGGY 1 cut(s) 472
BsrI ACTGG 2 cut(s) 241, 520
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 4 cut(s) 105, 162, 993, 1015
BssMI GATC 4 cut(s) 424, 774, 1193, 1232
BssNAI GTATAC 1 cut(s) 1316
BssNI GRCGYC 1 cut(s) 630
BssT1I CCWWGG 3 cut(s) 105, 162, 1015
Bst1107I GTATAC 1 cut(s) 1316
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 2 cut(s) 1058, 1504
Bst6I CTCTTC 4 cut(s) 498, 543, 551, 1458
BstACI GRCGYC 1 cut(s) 630
BstC8I GCNNGC 3 cut(s) 448, 940, 1225
BstDEI CTNAG 3 cut(s) 199, 1177, 1228
BstDSI CCRYGG 3 cut(s) 105, 162, 993
BstF5I GGATG 3 cut(s) 69, 932, 1268
BstFNI CGCG 2 cut(s) 773, 995
BstH2I RGCGCY 1 cut(s) 633
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 4 cut(s) 427, 777, 1196, 1235
BstMAI GTCTC 2 cut(s) 955, 1395
BstMBI GATC 4 cut(s) 424, 774, 1193, 1232
BstMWI GCNNNNNNNGC 5 cut(s) 299, 929, 989, 992, 1394
BstNI CCWGG 1 cut(s) 800
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 1 cut(s) 798
BstUI CGCG 2 cut(s) 773, 995
BstV1I GCAGC 1 cut(s) 995
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 424
BstZ17I GTATAC 1 cut(s) 1316
BsuI GTATCC 1 cut(s) 1462
BtgI CCRYGG 3 cut(s) 105, 162, 993
BtgZI GCGATG 1 cut(s) 748
BtsCI GGATG 3 cut(s) 69, 932, 1268
BtsIMutI CAGTG 1 cut(s) 234
BtuMI TCGCGA 1 cut(s) 773
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 3 cut(s) 448, 940, 1225
CaiI CAGNNNCTG 1 cut(s) 1502
CciI TCATGA 2 cut(s) 687, 1281
CfoI GCGC 1 cut(s) 632
Cfr10I RCCGGY 1 cut(s) 472
Cfr42I CCGCGG 1 cut(s) 996
CviAII CATG 7 cut(s) 106, 163, 394, 688, 751, 947, 1282
DdeI CTNAG 3 cut(s) 199, 1177, 1228
DinI GGCGCC 1 cut(s) 631
DpnI GATC 4 cut(s) 426, 776, 1195, 1234
DpnII GATC 4 cut(s) 424, 774, 1193, 1232
Eam1104I CTCTTC 4 cut(s) 498, 543, 551, 1458
EarI CTCTTC 4 cut(s) 498, 543, 551, 1458
Ecl136II GAGCTC 4 cut(s) 102, 190, 555, 566
Eco130I CCWWGG 3 cut(s) 105, 162, 1015
Eco24I GRGCYC 4 cut(s) 104, 192, 557, 568
Eco32I GATATC 1 cut(s) 876
Eco53kI GAGCTC 4 cut(s) 102, 190, 555, 566
Eco88I CYCGRG 2 cut(s) 745, 987
EcoICRI GAGCTC 4 cut(s) 102, 190, 555, 566
EcoRII CCWGG 1 cut(s) 798
EcoRV GATATC 1 cut(s) 876
EcoT14I CCWWGG 3 cut(s) 105, 162, 1015
EcoT38I GRGCYC 4 cut(s) 104, 192, 557, 568
EgeI GGCGCC 1 cut(s) 631
EheI GGCGCC 1 cut(s) 631
ErhI CCWWGG 3 cut(s) 105, 162, 1015
FaeI CATG 7 cut(s) 109, 166, 397, 691, 754, 950, 1285
FalI AAGNNNNNCTT 2 cut(s) 1467, 1499
FatI CATG 7 cut(s) 105, 162, 393, 687, 750, 946, 1281
FblI GTMKAC 1 cut(s) 1315
Fnu4HI GCNGC 4 cut(s) 111, 633, 984, 993
FokI GGATG 3 cut(s) 76, 919, 1275
FriOI GRGCYC 4 cut(s) 104, 192, 557, 568
Fsp4HI GCNGC 4 cut(s) 111, 633, 984, 993
FspBI CTAG 2 cut(s) 962, 1398
GlaI GCGC 1 cut(s) 631
GluI GCNGC 4 cut(s) 111, 633, 984, 993
HaeII RGCGCY 1 cut(s) 633
HapII CCGG 1 cut(s) 473
HhaI GCGC 1 cut(s) 632
Hin1I GRCGYC 1 cut(s) 630
Hin1II CATG 7 cut(s) 109, 166, 397, 691, 754, 950, 1285
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HindIII AAGCTT 2 cut(s) 291, 1225
HinfI GANTC 6 cut(s) 486, 508, 721, 820, 840, 1251
HpaI GTTAAC 1 cut(s) 1156
HpaII CCGG 1 cut(s) 473
HphI GGTGA 6 cut(s) 109, 217, 883, 928, 1351, 1360
Hpy166II GTNNAC 2 cut(s) 1156, 1316
Hpy188I TCNGA 2 cut(s) 485, 1250
Hpy188III TCNNGA 9 cut(s) 422, 550, 688, 710, 745, 772, 837, 1282, 1414
Hpy8I GTNNAC 2 cut(s) 1156, 1316
HpyAV CCTTC 3 cut(s) 88, 158, 1372
HpyCH4III ACNGT 2 cut(s) 1058, 1504
HpyCH4IV ACGT 2 cut(s) 666, 1207
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 929, 989, 992, 1394
HpyF3I CTNAG 3 cut(s) 199, 1177, 1228
HpySE526I ACGT 2 cut(s) 666, 1207
Hsp92I GRCGYC 1 cut(s) 630
Hsp92II CATG 7 cut(s) 109, 166, 397, 691, 754, 950, 1285
HspAI GCGC 1 cut(s) 630
KasI GGCGCC 1 cut(s) 629
KspAI GTTAAC 1 cut(s) 1156
KspI CCGCGG 1 cut(s) 996
Kzo9I GATC 4 cut(s) 424, 774, 1193, 1232
LmnI GCTCC 6 cut(s) 107, 118, 299, 563, 929, 965
Lsp1109I GCAGC 1 cut(s) 995
LweI GCATC 2 cut(s) 715, 941
MaeI CTAG 2 cut(s) 962, 1398
MaeII ACGT 2 cut(s) 666, 1207
MaeIII GTNAC 4 cut(s) 232, 522, 1058, 1357
MalI GATC 4 cut(s) 426, 776, 1195, 1234
MboI GATC 4 cut(s) 424, 774, 1193, 1232
MfeI CAATTG 2 cut(s) 210, 1372
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 5 cut(s) 104, 192, 557, 568, 1176
Mly113I GGCGCC 1 cut(s) 630
MlyI GAGTC 2 cut(s) 502, 834
MmeI TCCRAC 2 cut(s) 1228, 1360
MroXI GAANNNNTTC 2 cut(s) 758, 1104
MseI TTAA 4 cut(s) 999, 1034, 1155, 1485
MslI CAYNNNNRTG 2 cut(s) 161, 167
MspA1I CMGCKG 2 cut(s) 203, 995
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 800
MunI CAATTG 2 cut(s) 210, 1372
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 1 cut(s) 800
MvnI CGCG 2 cut(s) 773, 995
MwoI GCNNNNNNNGC 5 cut(s) 299, 929, 989, 992, 1394
NarI GGCGCC 1 cut(s) 630
NcoI CCATGG 2 cut(s) 105, 162
NdeII GATC 4 cut(s) 424, 774, 1193, 1232
NlaIII CATG 7 cut(s) 109, 166, 397, 691, 754, 950, 1285
NlaIV GGNNCC 2 cut(s) 114, 631
NmuCI GTSAC 3 cut(s) 232, 522, 1357
NruI TCGCGA 1 cut(s) 773
NspI RCATGY 1 cut(s) 950
PaeR7I CTCGAG 2 cut(s) 745, 987
PagI TCATGA 2 cut(s) 687, 1281
PaqCI CACCTGC 1 cut(s) 254
PciI ACATGT 1 cut(s) 946
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 925
PdmI GAANNNNTTC 2 cut(s) 758, 1104
PfeI GAWTC 4 cut(s) 486, 721, 820, 1251
PkrI GCNGC 4 cut(s) 112, 634, 985, 994
PleI GAGTC 2 cut(s) 502, 834
PluTI GGCGCC 1 cut(s) 633
PpsI GAGTC 2 cut(s) 502, 834
PscI ACATGT 1 cut(s) 946
PshBI ATTAAT 1 cut(s) 1034
Psp124BI GAGCTC 4 cut(s) 104, 192, 557, 568
Psp6I CCWGG 1 cut(s) 798
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 2 cut(s) 114, 631
PspXI VCTCGAGB 1 cut(s) 987
PstNI CAGNNNCTG 1 cut(s) 1502
PsuI RGATCY 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 203
RruI TCGCGA 1 cut(s) 773
RseI CAYNNNNRTG 2 cut(s) 161, 167
SacI GAGCTC 4 cut(s) 104, 192, 557, 568
SacII CCGCGG 1 cut(s) 996
SaqAI TTAA 4 cut(s) 999, 1034, 1155, 1485
SatI GCNGC 4 cut(s) 111, 633, 984, 993
Sau3AI GATC 4 cut(s) 424, 774, 1193, 1232
SchI GAGTC 2 cut(s) 502, 834
ScrFI CCNGG 1 cut(s) 800
SduI GDGCHC 5 cut(s) 104, 192, 557, 568, 1176
SfaNI GCATC 2 cut(s) 715, 941
SfoI GGCGCC 1 cut(s) 631
Sfr274I CTCGAG 2 cut(s) 745, 987
Sfr303I CCGCGG 1 cut(s) 996
SgrBI CCGCGG 1 cut(s) 996
SlaI CTCGAG 2 cut(s) 745, 987
SmiMI CAYNNNNRTG 2 cut(s) 161, 167
SmlI CTYRAG 3 cut(s) 745, 987, 1425
SmoI CTYRAG 3 cut(s) 745, 987, 1425
SsiI CCGC 6 cut(s) 110, 285, 633, 936, 993, 995
SspDI GGCGCC 1 cut(s) 629
SspMI CTAG 2 cut(s) 962, 1398
SstI GAGCTC 4 cut(s) 104, 192, 557, 568
StyD4I CCNGG 1 cut(s) 798
StyI CCWWGG 3 cut(s) 105, 162, 1015
TaaI ACNGT 2 cut(s) 1058, 1504
TaiI ACGT 2 cut(s) 669, 1210
TaqI TCGA 4 cut(s) 746, 861, 988, 1413
TauI GCSGC 3 cut(s) 113, 635, 995
TfiI GAWTC 4 cut(s) 486, 721, 820, 1251
Tru1I TTAA 4 cut(s) 999, 1034, 1155, 1485
Tru9I TTAA 4 cut(s) 999, 1034, 1155, 1485
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 3 cut(s) 232, 522, 1357
TseI GCWGC 1 cut(s) 983
Tsp45I GTSAC 3 cut(s) 232, 522, 1357
TspDTI ATGAA 8 cut(s) 104, 382, 642, 676, 731, 751, 767, 1298
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 241
VspI ATTAAT 1 cut(s) 1034
XapI RAATTY 1 cut(s) 614
XceI RCATGY 1 cut(s) 950
XhoI CTCGAG 2 cut(s) 745, 987
XmiI GTMKAC 1 cut(s) 1315
XmnI GAANNNNTTC 2 cut(s) 758, 1104
XspI CTAG 2 cut(s) 962, 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.