Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

2293973 .. 2294807

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1032300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGCCGAGCCGAAAGAGAGCAACTGACTCGAACTCTCAACCACCACCTCAACACCGTCCACGAGACCTTCCAGGTGTTGGATCAAACCGCACCTTCAACGCTTGAGAAGGTGAGCTGGGCGGAGGTGATAAAGATGGGCGATCAAGTCTACAAACAAGCTACCATTTTCATCTGTGTCCACCACTCATACCTTGCTATTGGGAATGCTTTGGACCGGAGGAGAAACGCCGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

80

Amino Acids

9.02

Weight (kDa)

8.0

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	3 cut(s)	90, 122, 231
AclWI	GGATC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	117, 161
AluI	AGCT	2 cut(s)	117, 161
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	4, 214
AsuHPI	GGTGA	2 cut(s)	124, 139
AvaII	GGWCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	62
BccI	CCATC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	4, 214
BmrFI	CCNGG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	82, 142
BspACI	CCGC	3 cut(s)	90, 122, 231
BspANI	GGCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	59
BssMI	GATC	2 cut(s)	82, 142
BssSI	CACGAG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	58
BstKTI	GATC	2 cut(s)	85, 145
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	82, 142
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	4, 214
CviJI	RGCY	4 cut(s)	6, 11, 117, 161
CviKI_1	RGCY	4 cut(s)	6, 11, 117, 161
DpnI	GATC	2 cut(s)	84, 144
DpnII	GATC	2 cut(s)	82, 142
EciI	GGCGGA	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	72
FaiI	YATR	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	2 cut(s)	124, 139
Hpy166II	GTNNAC	3 cut(s)	61, 151, 181
Hpy8I	GTNNAC	3 cut(s)	61, 151, 181
HpyAV	CCTTC	3 cut(s)	79, 103, 105
HpyCH4III	ACNGT	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	82, 142
LpnPI	CCDG	4 cut(s)	59, 86, 103, 230
MalI	GATC	2 cut(s)	84, 144
MboI	GATC	2 cut(s)	82, 142
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	59, 118, 213
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	82, 142
NmeAIII	GCCGAG	1 cut(s)	32
PctI	GAATGC	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	4, 214
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	82, 142
Sau96I	GGNCC	2 cut(s)	4, 214
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	9 cut(s)	51, 71, 78, 97, 114, 119, 129, 163, 195
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SsiI	CCGC	3 cut(s)	90, 122, 231
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	31
TauI	GCSGC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.