Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

36967084 .. 36975087

Gene Structure 8004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGCAGCAGAAACTAGAAATGGGACAGATGGTTGATGAAAAGAAGAAATGGACGATTACATTTGCGAGAGAGTTGAAGAAGGAGGGTATAATAGCTGCACCAATGGTGGCAGTGACGGCACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCCCTCTCCAGTGTTGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTCAGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAGACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTTCTATGGATATTCATGGATAAATTGTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATCCCTGCATTATTTGGTGCATCAATTCTTAAACCGTTAACTAGCTACTTCCAGTCTCAGAGTCTTATTTTCGCAATGCTCCTATCCTCTTTTGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGAATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAATGTATTCCTCAGTCTTTGAGAAAACCCGTATTAGAATTTCAAAAGATTCTATCCTGCATGTTGGAGAGTTCTTTTGCTTGGCTATCCCGTCTGCTGTAATGGTTTGTCTAAAATGGTGGTCGTGCGAGCTGCTTATTTTTCTGTCCGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCCATATGCCTTACAATCTCTACTTTGCACTTCACTTTATCACATGGATTCGGAGCTGCTACAAGTACTCGGGTATCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAGGCGATTATTGTAAGCACAACCCTCTTTTGCTGTCGCTATGTTTTGGGGAGTGCTTTCAGCAGTGAGACGCAGGTAGCGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTACTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTGGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTACTCGGGTTTCCTGTGCAGTTAAGGGGGAAAGGCCTTTGGATTGGAATAGTGGTCGGCTCTGTTGTGCAATCAACTCTTCTGGGTTGCATCACCTGTTTCACAAATTGGACTAAACAGGCAAAGTTGGCAAGAGATAGGATATTCGCAGAGAGATCATTATCAACTCGGGGCGGAGCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

478

Amino Acids

51.83

Weight (kDa)

8.9

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	34 - 192	4.5e-27	MatE
MatE	PF01554	255 - 417	1.9e-28	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	2 cut(s)	239, 1075
AciI	CCGC	2 cut(s)	1091, 1425
AclWI	GGATC	2 cut(s)	404, 417
AcsI	RAATTY	2 cut(s)	599, 711
AcuI	CTGAAG	3 cut(s)	410, 613, 837
AfaI	GTAC	4 cut(s)	322, 928, 1158, 1254
AfiI	CCNNNNNNNGG	2 cut(s)	270, 401
AgsI	TTSAA	3 cut(s)	76, 444, 717
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	405
Alw26I	GTCTC	3 cut(s)	513, 842, 1073
AlwI	GGATC	2 cut(s)	404, 417
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	4 cut(s)	930, 972, 1256, 1419
AoxI	GGCC	3 cut(s)	403, 823, 1285
ApeKI	GCWGC	7 cut(s)	4, 95, 805, 917, 968, 989, 1189
ApoI	RAATTY	2 cut(s)	599, 711
AsuHPI	GGTGA	2 cut(s)	202, 1336
AvaI	CYCGRG	4 cut(s)	930, 972, 1256, 1419
BaeI	ACNNNNGTAYC	6 cut(s)	110, 143, 918, 951, 1244, 1277
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1201
BccI	CCATC	2 cut(s)	22, 1179
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	513, 842, 1073
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	5 cut(s)	14, 140, 495, 845, 1173
BfmI	CTRYAG	2 cut(s)	122, 990
BfuAI	ACCTGC	2 cut(s)	239, 1075
BglI	GCCNNNNNGGC	1 cut(s)	578
BisI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1190
BlsI	GCNGC	7 cut(s)	6, 97, 807, 919, 970, 991, 1191
BmcAI	AGTACT	2 cut(s)	928, 1158
Bme1390I	CCNGG	1 cut(s)	407
BmeT110I	CYCGRG	4 cut(s)	930, 972, 1256, 1419
BmiI	GGNNCC	3 cut(s)	411, 667, 1429
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	482, 1350
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	2 cut(s)	169, 339
Bsa29I	ATCGAT	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	1411
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 401
Bse1I	ACTGG	4 cut(s)	186, 226, 356, 505
Bse3DI	GCAATG	2 cut(s)	534, 681
Bse8I	GATNNNNATC	1 cut(s)	1411
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	146
BseGI	GGATG	1 cut(s)	1190
BseJI	GATNNNNATC	1 cut(s)	1411
BseLI	CCNNNNNNNGG	2 cut(s)	270, 401
BseMI	GCAATG	2 cut(s)	534, 681
BseMII	CTCAG	6 cut(s)	524, 699, 1002, 1017, 1143, 1176
BseNI	ACTGG	4 cut(s)	186, 226, 356, 505
BseXI	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1201
BseYI	CCCAGC	1 cut(s)	661
BsgI	GTGCAG	2 cut(s)	81, 1289
BshFI	GGCC	3 cut(s)	405, 825, 1287
BshVI	ATCGAT	1 cut(s)	146
BsiHKCI	CYCGRG	4 cut(s)	930, 972, 1256, 1419
BsiSI	CCGG	1 cut(s)	822
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	270, 401
BsmAI	GTCTC	3 cut(s)	513, 842, 1073
BsmBI	CGTCTC	1 cut(s)	1073
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	405, 825, 1287
BsoBI	CYCGRG	4 cut(s)	930, 972, 1256, 1419
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	169, 409, 1406
BspACI	CCGC	2 cut(s)	1091, 1425
BspANI	GGCC	3 cut(s)	405, 825, 1287
BspCNI	CTCAG	6 cut(s)	523, 698, 1003, 1016, 1142, 1175
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	411, 667, 1429
BspMAI	CTGCAG	2 cut(s)	126, 994
BspMI	ACCTGC	2 cut(s)	239, 1075
BspPI	GGATC	2 cut(s)	404, 417
BsrDI	GCAATG	2 cut(s)	534, 681
BsrI	ACTGG	4 cut(s)	186, 226, 356, 505
BssMI	GATC	3 cut(s)	169, 409, 1406
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	2 cut(s)	563, 1335
BstC8I	GCNNGC	3 cut(s)	276, 433, 803
BstDEI	CTNAG	6 cut(s)	510, 685, 1003, 1011, 1129, 1162
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	1190
BstKTI	GATC	3 cut(s)	172, 412, 1409
BstMAI	GTCTC	3 cut(s)	513, 842, 1073
BstMBI	GATC	3 cut(s)	169, 409, 1406
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 284, 578, 977, 986, 1379
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	2 cut(s)	122, 990
BstV1I	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1201
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	405, 825, 1287
BsuTUI	ATCGAT	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	1190
BtsI	GCAGTG	4 cut(s)	117, 119, 999, 1081
BtsIMutI	CAGTG	7 cut(s)	117, 119, 193, 219, 999, 1008, 1081
BveI	ACCTGC	2 cut(s)	239, 1075
Cac8I	GCNNGC	3 cut(s)	276, 433, 803
CaiI	CAGNNNCTG	1 cut(s)	1010
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	1090
Csp6I	GTAC	4 cut(s)	321, 927, 1157, 1253
CviAII	CATG	5 cut(s)	379, 576, 734, 905, 1432
CviQI	GTAC	4 cut(s)	321, 927, 1157, 1253
DdeI	CTNAG	6 cut(s)	510, 685, 1003, 1011, 1129, 1162
DpnI	GATC	3 cut(s)	171, 411, 1408
DpnII	GATC	3 cut(s)	169, 409, 1406
Eam1104I	CTCTTC	2 cut(s)	563, 1335
EarI	CTCTTC	2 cut(s)	563, 1335
Eco147I	AGGCCT	1 cut(s)	1287
Eco24I	GRGCYC	1 cut(s)	583
Eco32I	GATATC	2 cut(s)	333, 420
Eco57I	CTGAAG	3 cut(s)	410, 613, 837
Eco88I	CYCGRG	4 cut(s)	930, 972, 1256, 1419
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	2 cut(s)	333, 420
EcoT38I	GRGCYC	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	1073
FaeI	CATG	5 cut(s)	382, 579, 737, 908, 1435
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	5 cut(s)	378, 575, 733, 904, 1431
FauNDI	CATATG	1 cut(s)	866
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1190
FokI	GGATG	1 cut(s)	1197
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1190
FspBI	CTAG	5 cut(s)	14, 140, 495, 845, 1173
GluI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1190
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	2 cut(s)	169, 339
HaeIII	GGCC	3 cut(s)	405, 825, 1287
HapII	CCGG	1 cut(s)	822
HgaI	GACGC	1 cut(s)	1090
Hin1II	CATG	5 cut(s)	382, 579, 737, 908, 1435
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	3 cut(s)	514, 722, 909
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	2 cut(s)	202, 1336
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	4 cut(s)	161, 513, 914, 1119
Hpy188III	TCNNGA	2 cut(s)	167, 240
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	5 cut(s)	73, 242, 434, 637, 836
HpyCH4III	ACNGT	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 284, 578, 977, 986, 1379
HpyF3I	CTNAG	6 cut(s)	510, 685, 1003, 1011, 1129, 1162
Hsp92II	CATG	5 cut(s)	382, 579, 737, 908, 1435
Ksp22I	TGATCA	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	169, 409, 1406
LmnI	GCTCC	5 cut(s)	284, 537, 914, 950, 1427
Lsp1109I	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1201
LweI	GCATC	2 cut(s)	482, 1350
MaeI	CTAG	5 cut(s)	14, 140, 495, 845, 1173
MaeIII	GTNAC	4 cut(s)	112, 217, 390, 1006
MalI	GATC	3 cut(s)	171, 411, 1408
MboI	GATC	3 cut(s)	169, 409, 1406
MboII	GAAGA	7 cut(s)	55, 88, 122, 356, 545, 550, 1322
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	7 cut(s)	195, 386, 477, 599, 711, 944, 1357
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	3 cut(s)	139, 718, 1213
MseI	TTAA	3 cut(s)	483, 491, 1274
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	6 cut(s)	116, 284, 578, 977, 986, 1379
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	3 cut(s)	169, 409, 1406
NlaIII	CATG	5 cut(s)	382, 579, 737, 908, 1435
NlaIV	GGNNCC	3 cut(s)	411, 667, 1429
NmuCI	GTSAC	3 cut(s)	112, 217, 1006
NspI	RCATGY	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	972
PaqCI	CACCTGC	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	1287
PfeI	GAWTC	2 cut(s)	722, 909
PkrI	GCNGC	7 cut(s)	6, 97, 807, 919, 970, 991, 1191
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	411, 667, 1429
PspXI	VCTCGAGB	1 cut(s)	972
PstI	CTGCAG	2 cut(s)	126, 994
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	4 cut(s)	322, 928, 1158, 1254
RsaNI	GTAC	4 cut(s)	321, 927, 1157, 1253
SaqAI	TTAA	3 cut(s)	483, 491, 1274
SatI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1190
Sau3AI	GATC	3 cut(s)	169, 409, 1406
ScaI	AGTACT	2 cut(s)	928, 1158
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	2 cut(s)	482, 1350
SfcI	CTRYAG	2 cut(s)	122, 990
Sfr274I	CTCGAG	1 cut(s)	972
SlaI	CTCGAG	1 cut(s)	972
SmlI	CTYRAG	1 cut(s)	972
SmoI	CTYRAG	1 cut(s)	972
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	7 cut(s)	195, 386, 477, 599, 711, 944, 1357
SseBI	AGGCCT	1 cut(s)	1287
SsiI	CCGC	2 cut(s)	1091, 1425
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	5 cut(s)	14, 140, 495, 845, 1173
StuI	AGGCCT	1 cut(s)	1287
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	489
TaqI	TCGA	2 cut(s)	146, 973
TasI	AATT	7 cut(s)	195, 386, 477, 599, 711, 944, 1357
TatI	WGTACW	3 cut(s)	320, 926, 1156
TfiI	GAWTC	2 cut(s)	722, 909
Tru1I	TTAA	3 cut(s)	483, 491, 1274
Tru9I	TTAA	3 cut(s)	483, 491, 1274
TscAI	CASTG	7 cut(s)	117, 126, 193, 226, 999, 1015, 1081
TseFI	GTSAC	3 cut(s)	112, 217, 1006
TseI	GCWGC	7 cut(s)	4, 95, 805, 917, 968, 989, 1189
Tsp45I	GTSAC	3 cut(s)	112, 217, 1006
TspDTI	ATGAA	3 cut(s)	51, 367, 957
TspRI	CASTG	7 cut(s)	117, 126, 193, 226, 999, 1015, 1081
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	2 cut(s)	599, 711
XceI	RCATGY	1 cut(s)	737
XhoI	CTCGAG	1 cut(s)	972
XspI	CTAG	5 cut(s)	14, 140, 495, 845, 1173
ZrmI	AGTACT	2 cut(s)	928, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.