Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003872.1

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

8102 .. 10401

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003872.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgggacagatggttgatgaagataagaaatggacgattacatttgcgagagagttgaagaaggagggtattatagctgcaccaatggttgcagtgacggtactgcagtatcttctgcaactagtatcgatgattatggtcggacatcttgatcagctctcgctatccagtgtagcaattgccatttctctcaccaatgtcactggtttcagccttcttgcacgcaaatattcaatgtggcttattcctgcactatttggtgcttcaattattaaaccgttaactcgctacttccagtctcagagtctcattttcccaatgctcctatcctctctcgccattcttctcttccatatatctgcctcatgggcttttgtgtataagctgggatttggaagtaaaggttcagcaatagccttcagtttatccacttggttatatgtggtaatgctgggttcctatgcaatgtattcctcagtcttcgagaaaacccgtattacaatttcaaaagattctattcttcatgttggagagttctttcgcttggctatcccgtctgctgtaatggtttgtactcgggtagcaaatgaattaggagctggtaatccacaagcagctcgagtagctgttcaggctgcagtgtttctctcagtcactgaagcgcttattgtaagcactactctcttttgcggtcgttctgttttgggacgtgctttcagcagtgagaagcaggtagtggactatgttgcagttatggcacctctgatttgcctctcagtttttatggacagcttacaagcagtactctcaggtacatacctagctatgttcgaaatgcttgtcttatttagaatacattatctcaccataagaacacatgtctataaaggggtagctagaggaagtggatggcagcatttgggggcgtatgtcaatcttggggcattttatttggttggacttcctgtggctatggtactcgggtttcctgtgcacttaagggggaaaggcctttggattggaatagtggtcggctcggttgtgcaatcaactcttctgggttgcatcacctatttcacaaattggactaaacaggttcataactctattttagatcatatcaaccaattcattttacatgaacttacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

383

Amino Acids

42.09

Weight (kDa)

9.44

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	721
AccB1I	GGYRCC	1 cut(s)	757
AciI	CCGC	1 cut(s)	690
AcuI	CTGAAG	2 cut(s)	403, 678
AfaI	GTAC	5 cut(s)	102, 574, 804, 814, 978
AfeI	AGCGCT	1 cut(s)	663
AflII	CTTAAG	1 cut(s)	997
AflIII	ACRYGT	1 cut(s)	877
AgsI	TTSAA	4 cut(s)	58, 234, 267, 507
AhlI	ACTAGT	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	710
AluBI	AGCT	9 cut(s)	77, 157, 385, 599, 617, 626, 792, 824, 896
AluI	AGCT	9 cut(s)	77, 157, 385, 599, 617, 626, 792, 824, 896
Alw21I	GWGCWC	1 cut(s)	996
Alw26I	GTCTC	2 cut(s)	303, 311
Alw44I	GTGCAC	1 cut(s)	992
AlwNI	CAGNNNCTG	1 cut(s)	656
Ama87I	CYCGRG	3 cut(s)	576, 618, 980
Aor51HI	AGCGCT	1 cut(s)	663
AoxI	GGCC	1 cut(s)	1009
ApaLI	GTGCAC	1 cut(s)	992
ApeKI	GCWGC	4 cut(s)	77, 614, 635, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	825, 857
AspLEI	GCGC	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	184, 856, 1060
AsuII	TTCGAA	1 cut(s)	831
AvaI	CYCGRG	3 cut(s)	576, 618, 980
BaeGI	GKGCMC	1 cut(s)	996
BaeI	ACNNNNGTAYC	6 cut(s)	92, 92, 125, 125, 968, 1001
BanI	GGYRCC	1 cut(s)	757
BbsI	GAAGAC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	996
BbvI	GCAGC	4 cut(s)	64, 622, 626, 925
BccI	CCATC	2 cut(s)	4, 903
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	303, 311
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	3 cut(s)	122, 821, 897
BfmI	CTRYAG	2 cut(s)	104, 636
BfoI	RGCGCY	1 cut(s)	665
BfrI	CTTAAG	1 cut(s)	997
BfuAI	ACCTGC	1 cut(s)	721
BglI	GCCNNNNNGGC	1 cut(s)	368
BisI	GCNGC	4 cut(s)	78, 615, 636, 914
BlsI	GCNGC	4 cut(s)	79, 616, 637, 915
BmcAI	AGTACT	1 cut(s)	804
BmeT110I	CYCGRG	3 cut(s)	576, 618, 980
BmgBI	CACGTC	1 cut(s)	710
BmiI	GGNNCC	2 cut(s)	457, 759
BmsI	GCATC	1 cut(s)	1074
BpiI	GAAGAC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	831
Bsa29I	ATCGAT	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	168, 208, 295
Bse3DI	GCAATG	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	128
BseGI	GGATG	1 cut(s)	914
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	5 cut(s)	314, 489, 663, 789, 822
BseNI	ACTGG	3 cut(s)	168, 208, 295
BseSI	GKGCMC	1 cut(s)	996
BseXI	GCAGC	4 cut(s)	64, 622, 626, 925
BseYI	CCCAGC	2 cut(s)	385, 451
BsgI	GTGCAG	2 cut(s)	63, 234
Bsh1285I	CGRYCG	1 cut(s)	694
BshFI	GGCC	1 cut(s)	1011
BshNI	GGYRCC	1 cut(s)	757
BshVI	ATCGAT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	694
BsiHKAI	GWGCWC	1 cut(s)	996
BsiHKCI	CYCGRG	3 cut(s)	576, 618, 980
BslFI	GGGAC	2 cut(s)	18, 720
BsmAI	GTCTC	2 cut(s)	303, 311
BsmFI	GGGAC	2 cut(s)	18, 720
BsnI	GGCC	1 cut(s)	1011
BsoBI	CYCGRG	3 cut(s)	576, 618, 980
Bsp119I	TTCGAA	1 cut(s)	831
Bsp1286I	GDGCHC	1 cut(s)	996
Bsp143I	GATC	2 cut(s)	151, 1114
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	1 cut(s)	1011
BspCNI	CTCAG	5 cut(s)	313, 488, 662, 788, 821
BspDI	ATCGAT	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	457, 759
BspMAI	CTGCAG	2 cut(s)	108, 640
BspMI	ACCTGC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	831
BspT107I	GGYRCC	1 cut(s)	757
BspTI	CTTAAG	1 cut(s)	997
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	168, 208, 295
BssMI	GATC	2 cut(s)	151, 1114
Bst4CI	ACNGT	2 cut(s)	100, 279
Bst6I	CTCTTC	2 cut(s)	353, 1059
BstAFI	CTTAAG	1 cut(s)	997
BstBI	TTCGAA	1 cut(s)	831
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	5 cut(s)	300, 475, 649, 775, 808
BstF5I	GGATG	1 cut(s)	914
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	2 cut(s)	154, 1117
BstMAI	GTCTC	2 cut(s)	303, 311
BstMBI	GATC	2 cut(s)	151, 1114
BstMCI	CGRYCG	1 cut(s)	694
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 623, 632, 755
BstNSI	RCATGY	1 cut(s)	881
BstSFI	CTRYAG	2 cut(s)	104, 636
BstSLI	GKGCMC	1 cut(s)	996
BstV1I	GCAGC	4 cut(s)	64, 622, 626, 925
BstV2I	GAAGAC	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	1011
BsuTUI	ATCGAT	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	710
BtsCI	GGATG	1 cut(s)	914
BtsI	GCAGTG	3 cut(s)	99, 645, 727
BtsIMutI	CAGTG	6 cut(s)	99, 175, 201, 645, 654, 727
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	656
CfoI	GCGC	1 cut(s)	664
ClaI	ATCGAT	1 cut(s)	128
Csp6I	GTAC	5 cut(s)	101, 573, 803, 813, 977
CviAII	CATG	4 cut(s)	366, 524, 878, 1139
CviQI	GTAC	5 cut(s)	101, 573, 803, 813, 977
DdeI	CTNAG	5 cut(s)	300, 475, 649, 775, 808
DpnI	GATC	2 cut(s)	153, 1116
DpnII	GATC	2 cut(s)	151, 1114
Eam1104I	CTCTTC	2 cut(s)	353, 1059
EarI	CTCTTC	2 cut(s)	353, 1059
Eco147I	AGGCCT	1 cut(s)	1011
Eco47III	AGCGCT	1 cut(s)	663
Eco57I	CTGAAG	2 cut(s)	403, 678
Eco88I	CYCGRG	3 cut(s)	576, 618, 980
FaeI	CATG	4 cut(s)	369, 527, 881, 1142
FaqI	GGGAC	2 cut(s)	18, 720
FatI	CATG	4 cut(s)	365, 523, 877, 1138
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	78, 615, 636, 914
FokI	GGATG	1 cut(s)	921
Fsp4HI	GCNGC	4 cut(s)	78, 615, 636, 914
FspBI	CTAG	3 cut(s)	122, 821, 897
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	4 cut(s)	78, 615, 636, 914
GsaI	CCCAGC	2 cut(s)	389, 455
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	1 cut(s)	1011
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	4 cut(s)	369, 527, 881, 1142
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	304, 512
HpaI	GTTAAC	1 cut(s)	282
HphI	GGTGA	3 cut(s)	184, 856, 1060
Hpy166II	GTNNAC	3 cut(s)	282, 739, 994
Hpy188I	TCNGA	3 cut(s)	143, 303, 765
Hpy188III	TCNNGA	2 cut(s)	149, 484
Hpy8I	GTNNAC	3 cut(s)	282, 739, 994
HpyAV	CCTTC	3 cut(s)	55, 224, 427
HpyCH4III	ACNGT	2 cut(s)	100, 279
HpyCH4IV	ACGT	1 cut(s)	709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 623, 632, 755
HpyF3I	CTNAG	5 cut(s)	300, 475, 649, 775, 808
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	4 cut(s)	369, 527, 881, 1142
HspAI	GCGC	1 cut(s)	662
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	151, 1114
LmnI	GCTCC	2 cut(s)	327, 596
Lsp1109I	GCAGC	4 cut(s)	64, 622, 626, 925
LweI	GCATC	1 cut(s)	1074
MaeI	CTAG	3 cut(s)	122, 821, 897
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	3 cut(s)	94, 199, 652
MalI	GATC	2 cut(s)	153, 1116
MboI	GATC	2 cut(s)	151, 1114
MboII	GAAGA	8 cut(s)	32, 70, 104, 335, 340, 472, 512, 1046
MfeI	CAATTG	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	996
MluCI	AATT	6 cut(s)	177, 267, 501, 590, 1081, 1127
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	3 cut(s)	121, 508, 937
MnlI	CCTC	7 cut(s)	58, 340, 373, 484, 771, 782, 893
MseI	TTAA	3 cut(s)	273, 281, 998
MspCI	CTTAAG	1 cut(s)	997
MunI	CAATTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	368, 623, 632, 755
NdeII	GATC	2 cut(s)	151, 1114
NlaIII	CATG	4 cut(s)	369, 527, 881, 1142
NlaIV	GGNNCC	2 cut(s)	457, 759
NmuCI	GTSAC	3 cut(s)	94, 199, 652
NspI	RCATGY	1 cut(s)	881
NspV	TTCGAA	1 cut(s)	831
PaeR7I	CTCGAG	1 cut(s)	618
PceI	AGGCCT	1 cut(s)	1011
PciI	ACATGT	1 cut(s)	877
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	79, 616, 637, 915
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PscI	ACATGT	1 cut(s)	877
PspFI	CCCAGC	2 cut(s)	385, 451
PspN4I	GGNNCC	2 cut(s)	457, 759
PspXI	VCTCGAGB	1 cut(s)	618
PstI	CTGCAG	2 cut(s)	108, 640
PstNI	CAGNNNCTG	1 cut(s)	656
RsaI	GTAC	5 cut(s)	102, 574, 804, 814, 978
RsaNI	GTAC	5 cut(s)	101, 573, 803, 813, 977
SaqAI	TTAA	3 cut(s)	273, 281, 998
SatI	GCNGC	4 cut(s)	78, 615, 636, 914
Sau3AI	GATC	2 cut(s)	151, 1114
ScaI	AGTACT	1 cut(s)	804
SchI	GAGTC	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	996
SfaNI	GCATC	1 cut(s)	1074
SfcI	CTRYAG	2 cut(s)	104, 636
Sfr274I	CTCGAG	1 cut(s)	618
SfuI	TTCGAA	1 cut(s)	831
SlaI	CTCGAG	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	618, 997
SmoI	CTYRAG	2 cut(s)	618, 997
SpeI	ACTAGT	1 cut(s)	121
Sse9I	AATT	6 cut(s)	177, 267, 501, 590, 1081, 1127
SseBI	AGGCCT	1 cut(s)	1011
SsiI	CCGC	1 cut(s)	690
SspI	AATATT	1 cut(s)	230
SspMI	CTAG	3 cut(s)	122, 821, 897
StuI	AGGCCT	1 cut(s)	1011
TaaI	ACNGT	2 cut(s)	100, 279
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	4 cut(s)	128, 483, 619, 831
TasI	AATT	6 cut(s)	177, 267, 501, 590, 1081, 1127
TatI	WGTACW	2 cut(s)	572, 802
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	3 cut(s)	273, 281, 998
Tru9I	TTAA	3 cut(s)	273, 281, 998
TscAI	CASTG	6 cut(s)	99, 175, 208, 645, 661, 727
TseFI	GTSAC	3 cut(s)	94, 199, 652
TseI	GCWGC	4 cut(s)	77, 614, 635, 913
Tsp45I	GTSAC	3 cut(s)	94, 199, 652
TspDTI	ATGAA	5 cut(s)	33, 512, 603, 1088, 1120
TspRI	CASTG	6 cut(s)	99, 175, 208, 645, 661, 727
Vha464I	CTTAAG	1 cut(s)	997
VneI	GTGCAC	1 cut(s)	992
XceI	RCATGY	1 cut(s)	881
XhoI	CTCGAG	1 cut(s)	618
XspI	CTAG	3 cut(s)	122, 821, 897
ZrmI	AGTACT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.