Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

24909178 .. 24911740

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGAAAATGGTTTCTCGTTGGTGCCCAAAGAAGAGGAAGAAGAAGAAGATTATAGTAATGAGAAATCTGAAGATCAGACGAGTTATTATTTGTCAACAGAGATGATGAAGAAGGTAAGCTTCATGGCTGCACCAATGGTGGCTGTGGCTGCTTCTCAATACCTCCTTCAAGTTATCTCCATTGTTATGGCTGGTCACTTGGACGAGCTTTCTCTCTCAGCCGTTGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCCTCATCTTTGGATTGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGGGCAATTTAGGAATATCAGTGCATACACTTACGGCTCAATGCTATGTCTTCTCTTGGTCTGTTTCCCAATCTCACTTTTGTGGGTTTTTATGGACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTTATCTCTCAATTAGCTTGTAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATACTCTGTTCTTCAATCTATGACTCGATTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTTGGAGCTCTCTTTTTTCACGTTCCCTTTTCGTGGCTTCTTGTCTATAAACTGAGATTCGGAATCGTCGGCGCCGCTTTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGCTTTGGGCTTTCATGAGAGACTCTGCTCTCTATCGAAAAAACTGGAATCTTCGGGCACAAGAAATCTTTTTGAGCATGAAGCAGTTCATTACCCTAGCAATTCCCACTGCAATGATGACTTGCCTGGAATGGTGGTCGTTTGAGCTTCTTATACTAATGTCAGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTCCTATCCATTTGCCTAACAATGTCGTCTCTGCATTACGTTATCGTGAATGCCATAGGAGCAGCAGCGAGCACACATGTCTCAAACAAGCTAGGAGCTGGAAATCCAAAGGCAGCTCGATCTGCGGCTAATTCTGCGATTTTTCTTGGCATGATTGATGCAGCCATAGTAAGCATCAGTCTCTACAGCTACAGAAGAAATTGGGCTTATATATTCAGTAATGAGAGTGAAGTCGCTGACTATGTCACTCAAATCACACCCTTTCTCTGTCTATCAATTGGTGTTGACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCGTATTATCTAGTCGGGATCCCGGTAGGTTCAATCTTGTGTTTTGTAGTGAAATTGAGAGGGAAAGGACTTTGGATCGGTATATTGGTAGGTTCCACTCTACAAACGATTGTTCTTGCTCTTGTCACTTTCTTCACCAATTGGGAACAAGAGGTAGCGAAGGCTAGAGACAGAGTAATCGAGATGATACCACAAGAAATCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

485

Amino Acids

53.58

Weight (kDa)

5.75

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	45 - 205	1.2e-31	MatE
MatE	PF01554	266 - 427	2.1e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	22, 647
AciI	CCGC	2 cut(s)	651, 1013
AclWI	GGATC	5 cut(s)	437, 1258, 1264, 1277, 1334
AcuI	CTGAAG	2 cut(s)	90, 244
AcyI	GRCGYC	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	1191
AfiI	CCNNNNNNNGG	1 cut(s)	609
AflIII	ACRYGT	1 cut(s)	964
AgsI	TTSAA	3 cut(s)	170, 518, 1284
AjnI	CCWGG	1 cut(s)	816
AleI	CACNNNNGTG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
Alw21I	GWGCWC	3 cut(s)	575, 586, 962
Alw26I	GTCTC	6 cut(s)	287, 705, 921, 973, 1073, 1413
AlwI	GGATC	5 cut(s)	437, 1258, 1264, 1277, 1334
ApeKI	GCWGC	6 cut(s)	128, 149, 950, 953, 1001, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	873, 905
Asp700I	GAANNNNTTC	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	1 cut(s)	889
AsuC2I	CCSGG	1 cut(s)	1274
AsuHPI	GGTGA	2 cut(s)	244, 1378
AvaII	GGWCC	1 cut(s)	889
BaeGI	GKGCMC	2 cut(s)	27, 751
BamHI	GGATCC	1 cut(s)	1269
BanI	GGYRCC	2 cut(s)	22, 647
BanII	GRGCYC	2 cut(s)	575, 586
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	3 cut(s)	575, 586, 962
BbvI	GCAGC	6 cut(s)	115, 136, 962, 965, 1013, 1061
BccI	CCATC	1 cut(s)	444
BceAI	ACGGC	3 cut(s)	206, 370, 1172
BciT130I	CCWGG	1 cut(s)	818
BciVI	GTATCC	1 cut(s)	497
BcnI	CCSGG	1 cut(s)	1274
BcoDI	GTCTC	6 cut(s)	287, 705, 921, 973, 1073, 1413
BfaI	CTAG	5 cut(s)	788, 980, 1206, 1262, 1416
BfmI	CTRYAG	2 cut(s)	1072, 1078
BfoI	RGCGCY	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	497
BisI	GCNGC	8 cut(s)	129, 150, 651, 951, 954, 1002, 1014, 1050
BlsI	GCNGC	8 cut(s)	130, 151, 652, 952, 955, 1003, 1015, 1051
Bme1390I	CCNGG	2 cut(s)	818, 1274
Bme18I	GGWCC	1 cut(s)	889
BmgT120I	GGNCC	1 cut(s)	889
BmiI	GGNNCC	4 cut(s)	24, 649, 1271, 1345
BmrFI	CCNGG	2 cut(s)	818, 1274
BmsI	GCATC	2 cut(s)	1036, 1071
BpiI	GAAGAC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	589
BpuMI	CCSGG	1 cut(s)	1274
BsaHI	GRCGYC	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	2 cut(s)	254, 490
Bse1I	ACTGG	2 cut(s)	538, 740
Bse3DI	GCAATG	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	818
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	3 cut(s)	231, 620, 1209
BseNI	ACTGG	2 cut(s)	538, 740
BseSI	GKGCMC	2 cut(s)	27, 751
BseXI	GCAGC	6 cut(s)	115, 136, 962, 965, 1013, 1061
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	114
BshNI	GGYRCC	2 cut(s)	22, 647
BsiHKAI	GWGCWC	3 cut(s)	575, 586, 962
BsiSI	CCGG	3 cut(s)	255, 491, 1274
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	6 cut(s)	287, 705, 921, 973, 1073, 1413
BsmBI	CGTCTC	1 cut(s)	921
BsmI	GAATGC	1 cut(s)	943
Bsp1286I	GDGCHC	5 cut(s)	27, 575, 586, 751, 962
Bsp143I	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
BspACI	CCGC	2 cut(s)	651, 1013
BspCNI	CTCAG	3 cut(s)	230, 621, 1208
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	4 cut(s)	24, 649, 1271, 1345
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	5 cut(s)	437, 1258, 1264, 1277, 1334
BspT107I	GGYRCC	2 cut(s)	22, 647
BsrDI	GCAATG	1 cut(s)	810
BsrFI	RCCGGY	2 cut(s)	254, 490
BsrI	ACTGG	2 cut(s)	538, 740
BssAI	RCCGGY	2 cut(s)	254, 490
BssMI	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
BssNI	GRCGYC	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	818
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	2 cut(s)	27, 569
BstACI	GRCGYC	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	958
BstDEI	CTNAG	3 cut(s)	217, 629, 1195
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	6 cut(s)	76, 445, 1010, 1253, 1272, 1329
BstMAI	GTCTC	6 cut(s)	287, 705, 921, 973, 1073, 1413
BstMBI	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 317, 947, 1010, 1022
BstNI	CCWGG	1 cut(s)	818
BstNSI	RCATGY	1 cut(s)	968
BstSCI	CCNGG	2 cut(s)	816, 1272
BstSFI	CTRYAG	2 cut(s)	1072, 1078
BstSLI	GKGCMC	2 cut(s)	27, 751
BstV1I	GCAGC	6 cut(s)	115, 136, 962, 965, 1013, 1061
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	442, 1269
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	2 cut(s)	442, 1269
BsuI	GTATCC	1 cut(s)	497
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	3 cut(s)	296, 346, 798
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	958
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	2 cut(s)	254, 490
Cfr13I	GGNCC	1 cut(s)	889
Csp6I	GTAC	1 cut(s)	1190
CviAII	CATG	5 cut(s)	124, 706, 769, 965, 1039
CviQI	GTAC	1 cut(s)	1190
DdeI	CTNAG	3 cut(s)	217, 629, 1195
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	6 cut(s)	75, 444, 1009, 1252, 1271, 1328
DpnII	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
DraIII	CACNNNGTG	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	27, 569
EarI	CTCTTC	2 cut(s)	27, 569
Ecl136II	GAGCTC	2 cut(s)	573, 584
Eco24I	GRGCYC	2 cut(s)	575, 586
Eco47I	GGWCC	1 cut(s)	889
Eco53kI	GAGCTC	2 cut(s)	573, 584
Eco57I	CTGAAG	2 cut(s)	90, 244
EcoICRI	GAGCTC	2 cut(s)	573, 584
EcoRII	CCWGG	1 cut(s)	816
EcoT38I	GRGCYC	2 cut(s)	575, 586
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
Esp3I	CGTCTC	1 cut(s)	921
FaeI	CATG	5 cut(s)	127, 709, 772, 968, 1042
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 432, 464
FatI	CATG	5 cut(s)	123, 705, 768, 964, 1038
FauNDI	CATATG	1 cut(s)	1454
Fnu4HI	GCNGC	8 cut(s)	129, 150, 651, 951, 954, 1002, 1014, 1050
FriOI	GRGCYC	2 cut(s)	575, 586
Fsp4HI	GCNGC	8 cut(s)	129, 150, 651, 951, 954, 1002, 1014, 1050
FspBI	CTAG	5 cut(s)	788, 980, 1206, 1262, 1416
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	8 cut(s)	129, 150, 651, 951, 954, 1002, 1014, 1050
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	651
HapII	CCGG	3 cut(s)	255, 491, 1274
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	5 cut(s)	127, 709, 772, 968, 1042
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	2 cut(s)	96, 1174
HindII	GTYRAC	2 cut(s)	96, 1174
HindIII	AAGCTT	2 cut(s)	118, 309
HinfI	GANTC	6 cut(s)	526, 633, 639, 713, 739, 858
HpaII	CCGG	3 cut(s)	255, 491, 1274
HphI	GGTGA	2 cut(s)	244, 1378
Hpy166II	GTNNAC	2 cut(s)	96, 1174
Hpy188I	TCNGA	4 cut(s)	70, 78, 503, 638
Hpy188III	TCNNGA	8 cut(s)	440, 568, 706, 855, 934, 1197, 1267, 1432
Hpy8I	GTNNAC	2 cut(s)	96, 1174
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	3 cut(s)	106, 176, 1405
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4IV	ACGT	3 cut(s)	597, 684, 927
HpyCH4V	TGCA	6 cut(s)	131, 344, 803, 922, 1049, 1241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 317, 947, 1010, 1022
HpyF3I	CTNAG	3 cut(s)	217, 629, 1195
HpySE526I	ACGT	3 cut(s)	597, 684, 927
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	5 cut(s)	127, 709, 772, 968, 1042
HspAI	GCGC	1 cut(s)	648
KasI	GGCGCC	1 cut(s)	647
Kzo9I	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
LmnI	GCTCC	6 cut(s)	317, 427, 581, 947, 983, 1232
Lsp1109I	GCAGC	6 cut(s)	115, 136, 962, 965, 1013, 1061
LweI	GCATC	2 cut(s)	1036, 1071
MaeI	CTAG	5 cut(s)	788, 980, 1206, 1262, 1416
MaeII	ACGT	3 cut(s)	597, 684, 927
MaeIII	GTNAC	5 cut(s)	194, 250, 540, 1132, 1375
MalI	GATC	6 cut(s)	75, 444, 1009, 1252, 1271, 1328
MboI	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
MfeI	CAATTG	2 cut(s)	1164, 1390
MflI	RGATCY	2 cut(s)	442, 1269
MhlI	GDGCHC	5 cut(s)	27, 575, 586, 751, 962
MluCI	AATT	8 cut(s)	326, 458, 792, 1018, 1087, 1164, 1304, 1390
Mly113I	GGCGCC	1 cut(s)	648
MlyI	GAGTC	3 cut(s)	520, 707, 852
MnlI	CCTC	8 cut(s)	28, 173, 275, 456, 570, 1202, 1304, 1396
MroXI	GAANNNNTTC	1 cut(s)	776
MslI	CAYNNNNRTG	3 cut(s)	185, 400, 803
MspI	CCGG	3 cut(s)	255, 491, 1274
MspR9I	CCNGG	2 cut(s)	818, 1274
MunI	CAATTG	2 cut(s)	1164, 1390
Mva1269I	GAATGC	1 cut(s)	943
MvaI	CCWGG	1 cut(s)	818
MwoI	GCNNNNNNNGC	5 cut(s)	149, 317, 947, 1010, 1022
NarI	GGCGCC	1 cut(s)	648
NciI	CCSGG	1 cut(s)	1274
NdeI	CATATG	1 cut(s)	1454
NdeII	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
NlaIII	CATG	5 cut(s)	127, 709, 772, 968, 1042
NlaIV	GGNNCC	4 cut(s)	24, 649, 1271, 1345
NmuCI	GTSAC	5 cut(s)	194, 250, 540, 1132, 1375
NspI	RCATGY	1 cut(s)	968
OliI	CACNNNNGTG	1 cut(s)	400
PagI	TCATGA	1 cut(s)	705
PaqCI	CACCTGC	1 cut(s)	272
PciI	ACATGT	1 cut(s)	964
PctI	GAATGC	1 cut(s)	943
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	3 cut(s)	633, 639, 739
PflFI	GACNNNGTC	1 cut(s)	1130
PkrI	GCNGC	8 cut(s)	130, 151, 652, 952, 955, 1003, 1015, 1051
PleI	GAGTC	3 cut(s)	520, 707, 852
PluTI	GGCGCC	1 cut(s)	651
PpsI	GAGTC	3 cut(s)	520, 707, 852
PscI	ACATGT	1 cut(s)	964
Psp124BI	GAGCTC	2 cut(s)	575, 586
Psp6I	CCWGG	1 cut(s)	816
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	816
PspN4I	GGNNCC	4 cut(s)	24, 649, 1271, 1345
PspPI	GGNCC	1 cut(s)	889
PsuI	RGATCY	2 cut(s)	442, 1269
PsyI	GACNNNGTC	1 cut(s)	1130
RsaI	GTAC	1 cut(s)	1191
RsaNI	GTAC	1 cut(s)	1190
RseI	CAYNNNNRTG	3 cut(s)	185, 400, 803
SacI	GAGCTC	2 cut(s)	575, 586
SatI	GCNGC	8 cut(s)	129, 150, 651, 951, 954, 1002, 1014, 1050
Sau3AI	GATC	6 cut(s)	73, 442, 1007, 1250, 1269, 1326
Sau96I	GGNCC	1 cut(s)	889
SchI	GAGTC	3 cut(s)	520, 707, 852
ScrFI	CCNGG	2 cut(s)	818, 1274
SduI	GDGCHC	5 cut(s)	27, 575, 586, 751, 962
SfaNI	GCATC	2 cut(s)	1036, 1071
SfcI	CTRYAG	2 cut(s)	1072, 1078
SfoI	GGCGCC	1 cut(s)	649
SinI	GGWCC	1 cut(s)	889
SmiMI	CAYNNNNRTG	3 cut(s)	185, 400, 803
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	8 cut(s)	326, 458, 792, 1018, 1087, 1164, 1304, 1390
SsiI	CCGC	2 cut(s)	651, 1013
SspDI	GGCGCC	1 cut(s)	647
SspMI	CTAG	5 cut(s)	788, 980, 1206, 1262, 1416
SstI	GAGCTC	2 cut(s)	575, 586
StyD4I	CCNGG	2 cut(s)	816, 1272
TaaI	ACNGT	1 cut(s)	300
TaiI	ACGT	3 cut(s)	600, 687, 930
TaqI	TCGA	5 cut(s)	529, 727, 879, 1006, 1431
TaqII	GACCGA	1 cut(s)	877
TasI	AATT	8 cut(s)	326, 458, 792, 1018, 1087, 1164, 1304, 1390
TauI	GCSGC	2 cut(s)	653, 1016
TfiI	GAWTC	3 cut(s)	633, 639, 739
TscAI	CASTG	3 cut(s)	303, 346, 805
TseFI	GTSAC	5 cut(s)	194, 250, 540, 1132, 1375
TseI	GCWGC	6 cut(s)	128, 149, 950, 953, 1001, 1049
Tsp45I	GTSAC	5 cut(s)	194, 250, 540, 1132, 1375
TspDTI	ATGAA	5 cut(s)	112, 122, 694, 769, 785
TspRI	CASTG	3 cut(s)	303, 346, 805
Tth111I	GACNNNGTC	1 cut(s)	1130
VpaK11BI	GGWCC	1 cut(s)	889
XceI	RCATGY	1 cut(s)	968
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	5 cut(s)	788, 980, 1206, 1262, 1416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.