Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

26824564 .. 26826914

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCGACAGAGAAGAAGTAAACAAGAAAGATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTACATCGCCGGTCCGATGATTGCAGTGAACTCGTCTATGTATGTTCTTCAGGTGATATCTATAATGATGGTTGGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTCACCGGTTTCAGCGTCGTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATGTGGTCAAGCTAATGGAGCTAAGCAATATGAGAAGCTTGGTGTTCATACTTACACAGGAATTGTCTCTTTGTTTCTTGTGTGTATTCCTCTCTCTCTTCTCTGGACATACATTGGTGATATACTTTCTCTTATTGGACAAGATGCTATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACTTGGCTCATACCCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAAGCACAGTCTCTGATTTTGCCTTTGGTTATGAGTTCAGTCTCTTCTCTCTGTATCCACATTGTCCTCTGTTGGAGCTTGGTCTTTAAGTTTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGTGACTGTTCTTGGATTATACATGACGTTTTCTTCTAGCTGTAGCAAGAGCCGTGCAACTATCTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTTGGAATCCCATCTGCATCTATGATTTGCCTTGAGTGGTGGTCATTCGAATTTTTAGTCCTGCTCTCTGGTATTTTACCAAATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACACAATCCTCCTTGTACCAAATCCCAGAGAGTCTCGGTGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAGCTGGAAACCCGAAACAAGCTCGAATGGCGGTTTACACAGCGATGGTTATAACAGGTGTAGAATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATTTGGTTACCTATTCAGTTCTGAAACTGAAGTTGTAGACTATGTAAAATCAATGGCTCCACTGCTTTCTTTATCGGTCATATTCGATGCCCTTCACGCAGCTCTCTCGGGTGTGGCTAGAGGATCAGGGAGGCAAGATATTGGGGCATACGTAAACCTAGCAGCATACTATCTCTTTGGAATACCAACTGCTATACTATTAGCTTTTGGGTTTAAAATGAGAGGAAGAGGACTCTGGATTGGAATCACAGTTGGGTCATGTGTACAAGCTGTTTTGCTCGGTCTTATCGTAATCCTCACTAATTGGAAAAAACAGGCGAGAAAGGCTAGAGAAAGAGTGATGGGTGATGAGTATGAAGAGAAAGAAAGTGAAGAAGAACATGAATACATCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046618 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

485

Amino Acids

52.42

Weight (kDa)

6.04

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	36 - 195	1.2e-30	MatE
MatE	PF01554	257 - 419	2.1e-26	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1007
AccI	GTMKAC	1 cut(s)	1098
AccII	CGCG	1 cut(s)	467
AciI	CCGC	6 cut(s)	11, 73, 198, 465, 494, 986
AclWI	GGATC	1 cut(s)	1192
AcsI	RAATTY	1 cut(s)	809
AcuI	CTGAAG	2 cut(s)	125, 1110
AfaI	GTAC	3 cut(s)	899, 934, 1326
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	737, 882
Alw26I	GTCTC	4 cut(s)	343, 525, 556, 920
AlwI	GGATC	1 cut(s)	1192
AlwNI	CAGNNNCTG	1 cut(s)	523
Ama87I	CYCGRG	1 cut(s)	1168
ApeKI	GCWGC	7 cut(s)	219, 490, 623, 923, 926, 1160, 1223
ApoI	RAATTY	1 cut(s)	809
ArsI	GACNNNNNNTTYG	2 cut(s)	801, 833
AsiGI	ACCGGT	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	5 cut(s)	157, 188, 217, 401, 1418
AsuII	TTCGAA	1 cut(s)	807
AvaI	CYCGRG	1 cut(s)	1168
AvaII	GGWCC	1 cut(s)	104
BbvI	GCAGC	7 cut(s)	231, 502, 635, 935, 938, 1172, 1235
BccI	CCATC	5 cut(s)	56, 154, 778, 994, 1396
BceAI	ACGGC	1 cut(s)	693
BcgI	CGANNNNNNTGC	4 cut(s)	105, 139, 1149, 1183
BciVI	GTATCC	1 cut(s)	575
BcoDI	GTCTC	4 cut(s)	343, 525, 556, 920
BfaI	CTAG	7 cut(s)	192, 255, 693, 851, 1179, 1220, 1389
BfmI	CTRYAG	2 cut(s)	217, 697
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	8 cut(s)	220, 491, 494, 624, 924, 927, 1161, 1224
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	8 cut(s)	221, 492, 495, 625, 925, 928, 1162, 1225
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	1168
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	1119
BmsI	GCATC	3 cut(s)	406, 785, 1138
Bpu1102I	GCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	807
BpuEI	CTTGAG	2 cut(s)	414, 812
BsaAI	YACGTR	1 cut(s)	1213
BsaBI	GATNNNNATC	1 cut(s)	1304
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	2 cut(s)	227, 756
Bse118I	RCCGGY	2 cut(s)	101, 227
Bse1I	ACTGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	1304
BseDI	CCNNGG	1 cut(s)	616
BseJI	GATNNNNATC	1 cut(s)	1304
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	882
BseNI	ACTGG	1 cut(s)	653
BseXI	GCAGC	7 cut(s)	231, 502, 635, 935, 938, 1172, 1235
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	2 cut(s)	642, 942
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	636
BshTI	ACCGGT	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	636
BsiHKCI	CYCGRG	1 cut(s)	1168
BsiSI	CCGG	3 cut(s)	102, 228, 757
BsmAI	GTCTC	4 cut(s)	343, 525, 556, 920
BsoBI	CYCGRG	1 cut(s)	1168
Bsp119I	TTCGAA	1 cut(s)	807
Bsp1407I	TGTACA	1 cut(s)	1324
Bsp143I	GATC	2 cut(s)	633, 1184
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	6 cut(s)	11, 73, 198, 465, 494, 986
BspCNI	CTCAG	1 cut(s)	881
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	1119
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	1 cut(s)	1192
BspT104I	TTCGAA	1 cut(s)	807
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	101, 227
BsrGI	TGTACA	1 cut(s)	1324
BsrI	ACTGG	1 cut(s)	653
BssAI	RCCGGY	2 cut(s)	101, 227
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	2 cut(s)	633, 1184
Bst4CI	ACNGT	3 cut(s)	519, 664, 1312
Bst6I	CTCTTC	4 cut(s)	375, 559, 1282, 1413
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	1324
BstBAI	YACGTR	1 cut(s)	1213
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	89, 294, 868
BstEII	GGTNACC	1 cut(s)	1067
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	2 cut(s)	636, 1187
BstMAI	GTCTC	4 cut(s)	343, 525, 556, 920
BstMBI	GATC	2 cut(s)	633, 1184
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	7 cut(s)	290, 425, 434, 629, 983, 1157, 1385
BstPI	GGTNACC	1 cut(s)	1067
BstSFI	CTRYAG	2 cut(s)	217, 697
BstSNI	TACGTA	1 cut(s)	1213
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	7 cut(s)	231, 502, 635, 935, 938, 1172, 1235
BsuI	GTATCC	1 cut(s)	575
BtgZI	GCGATG	2 cut(s)	82, 1013
BtsI	GCAGTG	2 cut(s)	123, 1121
BtsIMutI	CAGTG	2 cut(s)	123, 1121
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	523
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	2 cut(s)	101, 227
Cfr13I	GGNCC	1 cut(s)	104
CpoI	CGGWCCG	1 cut(s)	104
CseI	GACGC	2 cut(s)	211, 226
Csp6I	GTAC	3 cut(s)	898, 933, 1325
CspAI	ACCGGT	1 cut(s)	227
CspCI	CAANNNNNGTGG	2 cut(s)	1011, 1046
CspI	CGGWCCG	1 cut(s)	104
CviAII	CATG	4 cut(s)	679, 724, 1320, 1442
CviQI	GTAC	3 cut(s)	898, 933, 1325
DdeI	CTNAG	3 cut(s)	89, 294, 868
DpnI	GATC	2 cut(s)	635, 1186
DpnII	GATC	2 cut(s)	633, 1184
DraI	TTTAAA	1 cut(s)	1276
Eam1104I	CTCTTC	4 cut(s)	375, 559, 1282, 1413
EarI	CTCTTC	4 cut(s)	375, 559, 1282, 1413
EciI	GGCGGA	1 cut(s)	26
Eco105I	TACGTA	1 cut(s)	1213
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	125, 1110
Eco88I	CYCGRG	1 cut(s)	1168
Eco91I	GGTNACC	1 cut(s)	1067
EcoO65I	GGTNACC	1 cut(s)	1067
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	4 cut(s)	682, 727, 1323, 1445
FatI	CATG	4 cut(s)	678, 723, 1319, 1441
FauI	CCCGC	2 cut(s)	66, 472
FblI	GTMKAC	1 cut(s)	1098
Fnu4HI	GCNGC	8 cut(s)	220, 491, 494, 624, 924, 927, 1161, 1224
Fsp4HI	GCNGC	8 cut(s)	220, 491, 494, 624, 924, 927, 1161, 1224
FspBI	CTAG	7 cut(s)	192, 255, 693, 851, 1179, 1220, 1389
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	8 cut(s)	220, 491, 494, 624, 924, 927, 1161, 1224
GsaI	CCCAGC	1 cut(s)	441
HapII	CCGG	3 cut(s)	102, 228, 757
HgaI	GACGC	2 cut(s)	211, 226
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	682, 727, 1323, 1445
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	6 cut(s)	5, 765, 913, 1019, 1293, 1305
HpaII	CCGG	3 cut(s)	102, 228, 757
HphI	GGTGA	5 cut(s)	157, 188, 217, 401, 1418
Hpy166II	GTNNAC	6 cut(s)	52, 121, 991, 1099, 1216, 1325
Hpy188I	TCNGA	4 cut(s)	108, 525, 846, 1084
Hpy188III	TCNNGA	3 cut(s)	376, 431, 1297
Hpy8I	GTNNAC	6 cut(s)	52, 121, 991, 1099, 1216, 1325
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	10, 731, 1163
HpyCH4III	ACNGT	3 cut(s)	519, 664, 1312
HpyCH4IV	ACGT	3 cut(s)	657, 683, 1212
HpyF10VI	GCNNNNNNNGC	7 cut(s)	290, 425, 434, 629, 983, 1157, 1385
HpyF3I	CTNAG	3 cut(s)	89, 294, 868
HpySE526I	ACGT	3 cut(s)	657, 683, 1212
Hsp92II	CATG	4 cut(s)	682, 727, 1323, 1445
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	633, 1184
LmnI	GCTCC	4 cut(s)	290, 585, 956, 1123
Lsp1109I	GCAGC	7 cut(s)	231, 502, 635, 935, 938, 1172, 1235
LweI	GCATC	3 cut(s)	406, 785, 1138
MaeI	CTAG	7 cut(s)	192, 255, 693, 851, 1179, 1220, 1389
MaeII	ACGT	3 cut(s)	657, 683, 1212
MaeIII	GTNAC	5 cut(s)	92, 223, 476, 658, 1067
MalI	GATC	2 cut(s)	635, 1186
MboI	GATC	2 cut(s)	633, 1184
MluCI	AATT	3 cut(s)	333, 809, 1363
MlyI	GAGTC	2 cut(s)	922, 1287
MmeI	TCCRAC	2 cut(s)	243, 563
MseI	TTAA	2 cut(s)	597, 1275
MslI	CAYNNNNRTG	2 cut(s)	174, 998
MspI	CCGG	3 cut(s)	102, 228, 757
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	7 cut(s)	290, 425, 434, 629, 983, 1157, 1385
NdeII	GATC	2 cut(s)	633, 1184
NlaIII	CATG	4 cut(s)	682, 727, 1323, 1445
NlaIV	GGNNCC	1 cut(s)	1119
NmuCI	GTSAC	2 cut(s)	223, 658
NspV	TTCGAA	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	1 cut(s)	1347
PfeI	GAWTC	4 cut(s)	5, 765, 1019, 1305
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	8 cut(s)	221, 492, 495, 625, 925, 928, 1162, 1225
Ple19I	CGATCG	1 cut(s)	636
PleI	GAGTC	2 cut(s)	921, 1287
PpsI	GAGTC	2 cut(s)	921, 1287
Ppu21I	YACGTR	1 cut(s)	1213
PsiI	TTATAA	1 cut(s)	1007
PspEI	GGTNACC	1 cut(s)	1067
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	1119
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	523
PvuI	CGATCG	1 cut(s)	636
RsaI	GTAC	3 cut(s)	899, 934, 1326
RsaNI	GTAC	3 cut(s)	898, 933, 1325
RseI	CAYNNNNRTG	2 cut(s)	174, 998
Rsr2I	CGGWCCG	1 cut(s)	104
RsrII	CGGWCCG	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	597, 1275
SatI	GCNGC	8 cut(s)	220, 491, 494, 624, 924, 927, 1161, 1224
Sau3AI	GATC	2 cut(s)	633, 1184
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	2 cut(s)	922, 1287
SfaNI	GCATC	3 cut(s)	406, 785, 1138
SfcI	CTRYAG	2 cut(s)	217, 697
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	2 cut(s)	174, 998
SmlI	CTYRAG	2 cut(s)	429, 791
SmoI	CTYRAG	2 cut(s)	429, 791
SnaBI	TACGTA	1 cut(s)	1213
Sse9I	AATT	3 cut(s)	333, 809, 1363
SsiI	CCGC	6 cut(s)	11, 73, 198, 465, 494, 986
SspMI	CTAG	7 cut(s)	192, 255, 693, 851, 1179, 1220, 1389
TaaI	ACNGT	3 cut(s)	519, 664, 1312
TaiI	ACGT	3 cut(s)	660, 686, 1215
TaqI	TCGA	3 cut(s)	807, 979, 1146
TaqII	GACCGA	2 cut(s)	1126, 1331
TasI	AATT	3 cut(s)	333, 809, 1363
TatI	WGTACW	2 cut(s)	932, 1324
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	4 cut(s)	5, 765, 1019, 1305
Tru1I	TTAA	2 cut(s)	597, 1275
Tru9I	TTAA	2 cut(s)	597, 1275
TscAI	CASTG	2 cut(s)	123, 1128
TseFI	GTSAC	2 cut(s)	223, 658
TseI	GCWGC	7 cut(s)	219, 490, 623, 923, 926, 1160, 1223
Tsp45I	GTSAC	2 cut(s)	223, 658
TspDTI	ATGAA	3 cut(s)	308, 1431, 1458
TspRI	CASTG	2 cut(s)	123, 1128
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	809
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	7 cut(s)	192, 255, 693, 851, 1179, 1220, 1389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.