Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

46807986 .. 46846683

Gene Structure 38698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCAGCAGAAACTAGAAATGGGACAGATGGTTGATGAAAAGAAGAAATGGACGATTACATTTGCGAGAGAGTTGAAGAAGGAGGGTATAATAGCTGCACCAATGGTGGCAGTGACGGCACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCCCTCTCCAGTGTTGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTCAGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAGACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTTCTATGGATATTCATGGATAAATTGTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATCCCTGCATTATTTGGTGCATCAATTCTTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTTATTTTCGCAATGCTCCTATCCTCTTTTGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGAATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAATGTATTCCTCAGTCTTTGAGAAAACCCGTATTAGAATTTCAAAAGATTCTATCCTGCATGTTGGAGAGTTCTTTTGCTTGGCTATCCCGTCTGCTGTAATGGTTTGTCTAAAATGGTGGTCGTGCGAGCTGCTTATTTTTCTGTCCGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCCATATGCCTTACAATCTCTACTTTGCACTTCACTTTATCACATGGATTCGGAGCTGCTACAAGTACTCGGGTATCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAGGCGATTATTGTAAGCACAACCCTCTTTTGCTGTCGCTATGTTTTGGGGAGTGCTTTCAGCAGTGAGACGCAGGTAGCGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTACTCTCAGTTCACCTGCAACAGTGGATAAATGGGAATACCATGATAATTGATAAGGTTAGTTGGTTAATTTACACAGCAGCACAACTAAACAATGGTGTTGACAGGAATGCAGATTTGATGGAAAGCAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

430

Amino Acids

47.07

Weight (kDa)

7.95

Isoelectric Point (pI)

23.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	34 - 192	2.1e-27	MatE
MatE	PF01554	255 - 392	3.5e-21	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	239, 1179
Acc36I	ACCTGC	3 cut(s)	239, 1075, 1179
AciI	CCGC	1 cut(s)	1091
AclWI	GGATC	2 cut(s)	404, 417
AcsI	RAATTY	2 cut(s)	599, 711
AcuI	CTGAAG	3 cut(s)	410, 613, 837
AfaI	GTAC	3 cut(s)	322, 928, 1158
AfiI	CCNNNNNNNGG	2 cut(s)	270, 401
AgsI	TTSAA	3 cut(s)	76, 444, 717
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	9 cut(s)	95, 175, 595, 805, 917, 953, 971, 980, 1146
AluI	AGCT	9 cut(s)	95, 175, 595, 805, 917, 953, 971, 980, 1146
Alw26I	GTCTC	3 cut(s)	513, 842, 1073
AlwI	GGATC	2 cut(s)	404, 417
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	2 cut(s)	930, 972
AoxI	GGCC	2 cut(s)	403, 823
ApeKI	GCWGC	7 cut(s)	4, 95, 805, 917, 968, 989, 1235
ApoI	RAATTY	2 cut(s)	599, 711
AsuHPI	GGTGA	2 cut(s)	202, 1160
AvaI	CYCGRG	2 cut(s)	930, 972
BaeI	ACNNNNGTAYC	4 cut(s)	110, 143, 918, 951
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1247
BccI	CCATC	2 cut(s)	22, 1270
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	513, 842, 1073
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	3 cut(s)	14, 140, 845
BfmI	CTRYAG	2 cut(s)	122, 990
BfuAI	ACCTGC	3 cut(s)	239, 1075, 1179
BglI	GCCNNNNNGGC	1 cut(s)	578
BisI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1236
BlsI	GCNGC	7 cut(s)	6, 97, 807, 919, 970, 991, 1237
BmcAI	AGTACT	2 cut(s)	928, 1158
Bme1390I	CCNGG	1 cut(s)	407
BmeT110I	CYCGRG	2 cut(s)	930, 972
BmiI	GGNNCC	2 cut(s)	411, 667
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	2 cut(s)	169, 339
Bsa29I	ATCGAT	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 401
Bse1I	ACTGG	4 cut(s)	186, 226, 356, 505
Bse3DI	GCAATG	2 cut(s)	534, 681
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	270, 401
BseMI	GCAATG	2 cut(s)	534, 681
BseMII	CTCAG	6 cut(s)	524, 699, 1002, 1017, 1143, 1176
BseNI	ACTGG	4 cut(s)	186, 226, 356, 505
BseXI	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1247
BseYI	CCCAGC	1 cut(s)	661
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	405, 825
BshVI	ATCGAT	1 cut(s)	146
BsiHKCI	CYCGRG	2 cut(s)	930, 972
BsiSI	CCGG	1 cut(s)	822
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	270, 401
BsmAI	GTCTC	3 cut(s)	513, 842, 1073
BsmBI	CGTCTC	1 cut(s)	1073
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	1270
BsnI	GGCC	2 cut(s)	405, 825
BsoBI	CYCGRG	2 cut(s)	930, 972
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	169, 409
BspACI	CCGC	1 cut(s)	1091
BspANI	GGCC	2 cut(s)	405, 825
BspCNI	CTCAG	6 cut(s)	523, 698, 1003, 1016, 1142, 1175
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	411, 667
BspMAI	CTGCAG	2 cut(s)	126, 994
BspMI	ACCTGC	3 cut(s)	239, 1075, 1179
BspPI	GGATC	2 cut(s)	404, 417
BsrDI	GCAATG	2 cut(s)	534, 681
BsrI	ACTGG	4 cut(s)	186, 226, 356, 505
BssMI	GATC	2 cut(s)	169, 409
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	489, 1179
Bst6I	CTCTTC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	276, 433, 803
BstDEI	CTNAG	6 cut(s)	510, 685, 1003, 1011, 1129, 1162
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstKTI	GATC	2 cut(s)	172, 412
BstMAI	GTCTC	3 cut(s)	513, 842, 1073
BstMBI	GATC	2 cut(s)	169, 409
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 284, 578, 977, 986
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	2 cut(s)	122, 990
BstV1I	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1247
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	405, 825
BsuTUI	ATCGAT	1 cut(s)	146
BtsI	GCAGTG	4 cut(s)	117, 119, 999, 1081
BtsIMutI	CAGTG	8 cut(s)	117, 119, 193, 219, 999, 1008, 1081, 1184
BveI	ACCTGC	3 cut(s)	239, 1075, 1179
Cac8I	GCNNGC	3 cut(s)	276, 433, 803
CaiI	CAGNNNCTG	1 cut(s)	1010
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	1090
Csp6I	GTAC	3 cut(s)	321, 927, 1157
CviAII	CATG	5 cut(s)	379, 576, 734, 905, 1198
CviQI	GTAC	3 cut(s)	321, 927, 1157
DdeI	CTNAG	6 cut(s)	510, 685, 1003, 1011, 1129, 1162
DpnI	GATC	2 cut(s)	171, 411
DpnII	GATC	2 cut(s)	169, 409
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	583
Eco32I	GATATC	2 cut(s)	333, 420
Eco57I	CTGAAG	3 cut(s)	410, 613, 837
Eco88I	CYCGRG	2 cut(s)	930, 972
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	2 cut(s)	333, 420
EcoT38I	GRGCYC	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	1073
FaeI	CATG	5 cut(s)	382, 579, 737, 908, 1201
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	5 cut(s)	378, 575, 733, 904, 1197
FauNDI	CATATG	1 cut(s)	866
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1236
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1236
FspBI	CTAG	3 cut(s)	14, 140, 845
GluI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1236
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	2 cut(s)	169, 339
HaeIII	GGCC	2 cut(s)	405, 825
HapII	CCGG	1 cut(s)	822
HgaI	GACGC	1 cut(s)	1090
Hin1II	CATG	5 cut(s)	382, 579, 737, 908, 1201
HincII	GTYRAC	2 cut(s)	492, 1258
HindII	GTYRAC	2 cut(s)	492, 1258
HinfI	GANTC	3 cut(s)	514, 722, 909
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	2 cut(s)	202, 1160
Hpy166II	GTNNAC	3 cut(s)	492, 1168, 1258
Hpy188I	TCNGA	4 cut(s)	161, 513, 914, 1119
Hpy188III	TCNNGA	2 cut(s)	167, 240
Hpy8I	GTNNAC	3 cut(s)	492, 1168, 1258
HpyAV	CCTTC	5 cut(s)	73, 242, 434, 637, 836
HpyCH4III	ACNGT	2 cut(s)	489, 1179
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 284, 578, 977, 986
HpyF3I	CTNAG	6 cut(s)	510, 685, 1003, 1011, 1129, 1162
Hsp92II	CATG	5 cut(s)	382, 579, 737, 908, 1201
Ksp22I	TGATCA	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	169, 409
LmnI	GCTCC	4 cut(s)	284, 537, 914, 950
Lsp1109I	GCAGC	7 cut(s)	16, 82, 792, 904, 976, 980, 1247
LweI	GCATC	1 cut(s)	482
MaeI	CTAG	3 cut(s)	14, 140, 845
MaeIII	GTNAC	4 cut(s)	112, 217, 390, 1006
MalI	GATC	2 cut(s)	171, 411
MboI	GATC	2 cut(s)	169, 409
MboII	GAAGA	6 cut(s)	55, 88, 122, 356, 545, 550
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	8 cut(s)	195, 386, 477, 599, 711, 944, 1203, 1224
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	2 cut(s)	139, 718
MseI	TTAA	3 cut(s)	483, 491, 1223
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	1270
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	5 cut(s)	116, 284, 578, 977, 986
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	2 cut(s)	169, 409
NlaIII	CATG	5 cut(s)	382, 579, 737, 908, 1201
NlaIV	GGNNCC	2 cut(s)	411, 667
NmuCI	GTSAC	3 cut(s)	112, 217, 1006
NspI	RCATGY	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	972
PaqCI	CACCTGC	2 cut(s)	239, 1179
PctI	GAATGC	1 cut(s)	1270
PfeI	GAWTC	2 cut(s)	722, 909
PkrI	GCNGC	7 cut(s)	6, 97, 807, 919, 970, 991, 1237
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	411, 667
PspXI	VCTCGAGB	1 cut(s)	972
PsrI	GAACNNNNNNTAC	2 cut(s)	1149, 1181
PstI	CTGCAG	2 cut(s)	126, 994
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	3 cut(s)	322, 928, 1158
RsaNI	GTAC	3 cut(s)	321, 927, 1157
SaqAI	TTAA	3 cut(s)	483, 491, 1223
SatI	GCNGC	7 cut(s)	5, 96, 806, 918, 969, 990, 1236
Sau3AI	GATC	2 cut(s)	169, 409
ScaI	AGTACT	2 cut(s)	928, 1158
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	1 cut(s)	482
SfcI	CTRYAG	2 cut(s)	122, 990
Sfr274I	CTCGAG	1 cut(s)	972
SlaI	CTCGAG	1 cut(s)	972
SmlI	CTYRAG	1 cut(s)	972
SmoI	CTYRAG	1 cut(s)	972
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	8 cut(s)	195, 386, 477, 599, 711, 944, 1203, 1224
SsiI	CCGC	1 cut(s)	1091
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	3 cut(s)	14, 140, 845
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	489, 1179
TaqI	TCGA	2 cut(s)	146, 973
TasI	AATT	8 cut(s)	195, 386, 477, 599, 711, 944, 1203, 1224
TatI	WGTACW	3 cut(s)	320, 926, 1156
TfiI	GAWTC	2 cut(s)	722, 909
Tru1I	TTAA	3 cut(s)	483, 491, 1223
Tru9I	TTAA	3 cut(s)	483, 491, 1223
TscAI	CASTG	8 cut(s)	117, 126, 193, 226, 999, 1015, 1081, 1184
TseFI	GTSAC	3 cut(s)	112, 217, 1006
TseI	GCWGC	7 cut(s)	4, 95, 805, 917, 968, 989, 1235
Tsp45I	GTSAC	3 cut(s)	112, 217, 1006
TspDTI	ATGAA	3 cut(s)	51, 367, 957
TspRI	CASTG	8 cut(s)	117, 126, 193, 226, 999, 1015, 1081, 1184
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	2 cut(s)	599, 711
XceI	RCATGY	1 cut(s)	737
XhoI	CTCGAG	1 cut(s)	972
XspI	CTAG	3 cut(s)	14, 140, 845
ZrmI	AGTACT	2 cut(s)	928, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.