Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

38670623 .. 38673263

Gene Structure 2641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCAGCAGAAACAAGAAATGGGACAGATGGTTGATGAAGATAAGAAATGGACGATTACATTTGCGAGAGAGTTGAAGAAGGAGGGTATTATAGCGGCACCAATGGTTGCAGTGACGGTACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCGCTATCCAGTGTAGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTGTAAGTCCTGCTAAGTCCTGCTTTTTCTTGTGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAAACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTCCTATGGATATTCATGGATAAATTGTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAATTATTCATTGTGGCTTATTCCTGCACTATTTGGTGCTTCAATTATTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTCATTTTCCCAATGCTCCTGTCCTCTTTTGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGAATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAATGTATTCCTCAGTCTTCGAGAAAACCCGTATTACAATTTCAAAAGATTCTATCCTTCATGTTGGAGAGTTCTTTCGCTTGGCTATCCCGTCTGCTGTAATGGTTTGCCTTACAATCTCTACTTTGCACTTCACTTTATCATATGGATTCGGAGCTGCTGCAAGTACTCGCGTATCAAATGAATTAGGAGCTGGTAATCCGCAAGCAGCTCGAATAGCTGTTCAGGCTGCAGCGTTTCTCTCAGTCACTGAAGCGCTTATTGTAAGCACAACTCTCTTTCGCTGTCGTTCTGTTTTGGGACGTGCTTTCAGCAGTGAGAAGCAGGTAGTGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTTCTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTGGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTTCTCGGGTTTCCTGTGCACTTAAAGGGGAAAGGCCTTTGGATTGGAATAGTGGTCGGCTCTGTTGTGCAATCAACTCTTCTGGGTTGCATCACCTGTTTCACAAATTGGACTAAACAGGCGGCCGTTGGCGCTGGGCGAATGGATTGGGCGTTGGGCTCCCGTGCGGCCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

452

Amino Acids

48.9

Weight (kDa)

8.98

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	34 - 198	7.8e-23	MatE
MatE	PF01554	262 - 394	4e-22	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1006
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	1 cut(s)	864
AciI	CCGC	5 cut(s)	95, 893, 1304, 1349, 1353
AclWI	GGATC	2 cut(s)	422, 435
AcoI	YGGCCR	2 cut(s)	1305, 1350
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	3 cut(s)	428, 631, 963
AfaI	GTAC	3 cut(s)	120, 340, 859
AfeI	AGCGCT	1 cut(s)	948
AfiI	CCNNNNNNNGG	2 cut(s)	288, 419
AgsI	TTSAA	3 cut(s)	76, 495, 735
AhlI	ACTAGT	1 cut(s)	139
AjiI	CACGTC	1 cut(s)	995
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	8 cut(s)	175, 613, 848, 884, 902, 911, 1077, 1103
AluI	AGCT	8 cut(s)	175, 613, 848, 884, 902, 911, 1077, 1103
Alw21I	GWGCWC	1 cut(s)	1203
Alw26I	GTCTC	3 cut(s)	386, 531, 539
Alw44I	GTGCAC	1 cut(s)	1199
AlwI	GGATC	2 cut(s)	422, 435
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	1187
Aor51HI	AGCGCT	1 cut(s)	948
AoxI	GGCC	4 cut(s)	421, 1216, 1305, 1350
ApaLI	GTGCAC	1 cut(s)	1199
ApeKI	GCWGC	7 cut(s)	4, 848, 851, 899, 920, 923, 1120
ApoI	RAATTY	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	949, 1316
AsuHPI	GGTGA	2 cut(s)	202, 1267
AvaI	CYCGRG	1 cut(s)	1187
BaeGI	GKGCMC	1 cut(s)	1203
BaeI	ACNNNNGTAYC	6 cut(s)	110, 110, 143, 143, 849, 882
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	601, 1343
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	1203
BbvI	GCAGC	7 cut(s)	16, 835, 838, 907, 911, 935, 1132
BccI	CCATC	2 cut(s)	22, 1110
BceAI	ACGGC	1 cut(s)	1292
BcgI	CGANNNNNNTGC	2 cut(s)	884, 918
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	386, 531, 539
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	3 cut(s)	140, 1104, 1357
BfmI	CTRYAG	2 cut(s)	122, 921
BfoI	RGCGCY	2 cut(s)	950, 1317
BfuAI	ACCTGC	1 cut(s)	1006
BglI	GCCNNNNNGGC	1 cut(s)	596
BmcAI	AGTACT	1 cut(s)	859
Bme1390I	CCNGG	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	1187
BmgBI	CACGTC	1 cut(s)	995
BmiI	GGNNCC	4 cut(s)	99, 429, 685, 1342
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	1281
BpiI	GAAGAC	1 cut(s)	700
BpmI	CTGGAG	1 cut(s)	357
Bsa29I	ATCGAT	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 419
Bse1I	ACTGG	4 cut(s)	186, 226, 374, 523
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	425
BseCI	ATCGAT	1 cut(s)	146
BseGI	GGATG	1 cut(s)	1121
BseLI	CCNNNNNNNGG	2 cut(s)	288, 419
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	5 cut(s)	542, 717, 948, 1074, 1107
BseNI	ACTGG	4 cut(s)	186, 226, 374, 523
BseSI	GKGCMC	1 cut(s)	1203
BseX3I	CGGCCG	2 cut(s)	1305, 1350
BseXI	GCAGC	7 cut(s)	16, 835, 838, 907, 911, 935, 1132
BseYI	CCCAGC	2 cut(s)	679, 1316
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	864
Bsh1285I	CGRYCG	2 cut(s)	1308, 1353
BshFI	GGCC	4 cut(s)	423, 1218, 1307, 1352
BshNI	GGYRCC	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	2 cut(s)	1308, 1353
BsiHKAI	GWGCWC	1 cut(s)	1203
BsiHKCI	CYCGRG	1 cut(s)	1187
BslFI	GGGAC	2 cut(s)	36, 1005
BslI	CCNNNNNNNGG	2 cut(s)	288, 419
BsmAI	GTCTC	3 cut(s)	386, 531, 539
BsmFI	GGGAC	2 cut(s)	36, 1005
BsnI	GGCC	4 cut(s)	423, 1218, 1307, 1352
BsoBI	CYCGRG	1 cut(s)	1187
Bsp1286I	GDGCHC	3 cut(s)	601, 1203, 1343
Bsp143I	GATC	2 cut(s)	169, 427
BspACI	CCGC	5 cut(s)	95, 893, 1304, 1349, 1353
BspANI	GGCC	4 cut(s)	423, 1218, 1307, 1352
BspCNI	CTCAG	5 cut(s)	541, 716, 947, 1073, 1106
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	864
BspLI	GGNNCC	4 cut(s)	99, 429, 685, 1342
BspMAI	CTGCAG	2 cut(s)	126, 925
BspMI	ACCTGC	1 cut(s)	1006
BspPI	GGATC	2 cut(s)	422, 435
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	4 cut(s)	186, 226, 374, 523
BssMI	GATC	2 cut(s)	169, 427
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	118, 507
Bst6I	CTCTTC	2 cut(s)	581, 1266
BstC8I	GCNNGC	3 cut(s)	294, 451, 897
BstDEI	CTNAG	6 cut(s)	249, 528, 703, 934, 1060, 1093
BstENI	CCTNNNNNAGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	1121
BstFNI	CGCG	1 cut(s)	864
BstH2I	RGCGCY	2 cut(s)	950, 1317
BstHHI	GCGC	2 cut(s)	949, 1316
BstKTI	GATC	2 cut(s)	172, 430
BstMAI	GTCTC	3 cut(s)	386, 531, 539
BstMBI	GATC	2 cut(s)	169, 427
BstMCI	CGRYCG	2 cut(s)	1308, 1353
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 596, 908, 917, 1313
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	2 cut(s)	122, 921
BstSLI	GKGCMC	1 cut(s)	1203
BstUI	CGCG	1 cut(s)	864
BstV1I	GCAGC	7 cut(s)	16, 835, 838, 907, 911, 935, 1132
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	427
BstZI	CGGCCG	2 cut(s)	1305, 1350
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	423, 1218, 1307, 1352
BsuTUI	ATCGAT	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	995
BtsCI	GGATG	1 cut(s)	1121
BtsI	GCAGTG	2 cut(s)	117, 1012
BtsIMutI	CAGTG	5 cut(s)	117, 193, 219, 939, 1012
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	3 cut(s)	294, 451, 897
CaiI	CAGNNNCTG	1 cut(s)	941
CciNI	GCGGCCGC	1 cut(s)	1350
CfoI	GCGC	2 cut(s)	949, 1316
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	119, 339, 858
CviAII	CATG	3 cut(s)	397, 594, 752
CviQI	GTAC	3 cut(s)	119, 339, 858
DdeI	CTNAG	6 cut(s)	249, 528, 703, 934, 1060, 1093
DpnI	GATC	2 cut(s)	171, 429
DpnII	GATC	2 cut(s)	169, 427
EaeI	YGGCCR	2 cut(s)	1305, 1350
EagI	CGGCCG	2 cut(s)	1305, 1350
Eam1104I	CTCTTC	2 cut(s)	581, 1266
EarI	CTCTTC	2 cut(s)	581, 1266
EclXI	CGGCCG	2 cut(s)	1305, 1350
Eco147I	AGGCCT	1 cut(s)	1218
Eco24I	GRGCYC	2 cut(s)	601, 1343
Eco32I	GATATC	2 cut(s)	351, 438
Eco47III	AGCGCT	1 cut(s)	948
Eco52I	CGGCCG	2 cut(s)	1305, 1350
Eco57I	CTGAAG	3 cut(s)	428, 631, 963
Eco88I	CYCGRG	1 cut(s)	1187
EcoNI	CCTNNNNNAGG	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	423
EcoRV	GATATC	2 cut(s)	351, 438
EcoT38I	GRGCYC	2 cut(s)	601, 1343
FaeI	CATG	3 cut(s)	400, 597, 755
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	2 cut(s)	36, 1005
FatI	CATG	3 cut(s)	396, 593, 751
FauNDI	CATATG	1 cut(s)	835
FbaI	TGATCA	1 cut(s)	169
FokI	GGATG	1 cut(s)	1128
FriOI	GRGCYC	2 cut(s)	601, 1343
FspBI	CTAG	3 cut(s)	140, 1104, 1357
GlaI	GCGC	2 cut(s)	948, 1315
GsaI	CCCAGC	2 cut(s)	683, 1320
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	2 cut(s)	950, 1317
HaeIII	GGCC	4 cut(s)	423, 1218, 1307, 1352
HhaI	GCGC	2 cut(s)	949, 1316
Hin1II	CATG	3 cut(s)	400, 597, 755
Hin6I	GCGC	2 cut(s)	947, 1314
HinP1I	GCGC	2 cut(s)	947, 1314
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	3 cut(s)	532, 740, 840
HpaI	GTTAAC	1 cut(s)	510
HphI	GGTGA	2 cut(s)	202, 1267
Hpy166II	GTNNAC	3 cut(s)	510, 1024, 1201
Hpy188I	TCNGA	4 cut(s)	161, 531, 845, 1050
Hpy188III	TCNNGA	2 cut(s)	167, 712
Hpy8I	GTNNAC	3 cut(s)	510, 1024, 1201
HpyAV	CCTTC	5 cut(s)	73, 242, 452, 655, 758
HpyCH4III	ACNGT	2 cut(s)	118, 507
HpyCH4IV	ACGT	1 cut(s)	994
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 596, 908, 917, 1313
HpyF3I	CTNAG	6 cut(s)	249, 528, 703, 934, 1060, 1093
HpySE526I	ACGT	1 cut(s)	994
Hsp92II	CATG	3 cut(s)	400, 597, 755
HspAI	GCGC	2 cut(s)	947, 1314
Ksp22I	TGATCA	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	169, 427
LmnI	GCTCC	5 cut(s)	302, 555, 845, 881, 1346
Lsp1109I	GCAGC	7 cut(s)	16, 835, 838, 907, 911, 935, 1132
LweI	GCATC	1 cut(s)	1281
MaeI	CTAG	3 cut(s)	140, 1104, 1357
MaeII	ACGT	1 cut(s)	994
MaeIII	GTNAC	4 cut(s)	112, 217, 408, 937
MalI	GATC	2 cut(s)	171, 429
MboI	GATC	2 cut(s)	169, 427
MboII	GAAGA	7 cut(s)	50, 88, 122, 563, 568, 700, 1253
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	601, 1203, 1343
MluCI	AATT	8 cut(s)	195, 404, 454, 495, 617, 729, 875, 1288
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	3 cut(s)	139, 736, 1144
MnlI	CCTC	8 cut(s)	76, 381, 568, 601, 712, 1056, 1067, 1100
MseI	TTAA	3 cut(s)	501, 509, 1205
MspR9I	CCNGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	5 cut(s)	302, 596, 908, 917, 1313
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	2 cut(s)	169, 427
NlaIII	CATG	3 cut(s)	400, 597, 755
NlaIV	GGNNCC	4 cut(s)	99, 429, 685, 1342
NmuCI	GTSAC	3 cut(s)	112, 217, 937
NotI	GCGGCCGC	1 cut(s)	1350
PceI	AGGCCT	1 cut(s)	1218
PfeI	GAWTC	2 cut(s)	740, 840
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	423
PspFI	CCCAGC	2 cut(s)	679, 1316
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	4 cut(s)	99, 429, 685, 1342
PstI	CTGCAG	2 cut(s)	126, 925
PstNI	CAGNNNCTG	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	3 cut(s)	120, 340, 859
RsaNI	GTAC	3 cut(s)	119, 339, 858
SaqAI	TTAA	3 cut(s)	501, 509, 1205
Sau3AI	GATC	2 cut(s)	169, 427
ScaI	AGTACT	1 cut(s)	859
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	3 cut(s)	601, 1203, 1343
SfaNI	GCATC	1 cut(s)	1281
SfcI	CTRYAG	2 cut(s)	122, 921
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	8 cut(s)	195, 404, 454, 495, 617, 729, 875, 1288
SseBI	AGGCCT	1 cut(s)	1218
SsiI	CCGC	5 cut(s)	95, 893, 1304, 1349, 1353
SspMI	CTAG	3 cut(s)	140, 1104, 1357
StuI	AGGCCT	1 cut(s)	1218
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	118, 507
TaiI	ACGT	1 cut(s)	997
TaqI	TCGA	3 cut(s)	146, 711, 904
TasI	AATT	8 cut(s)	195, 404, 454, 495, 617, 729, 875, 1288
TatI	WGTACW	2 cut(s)	338, 857
TauI	GCSGC	4 cut(s)	98, 1307, 1352, 1355
TfiI	GAWTC	2 cut(s)	740, 840
Tru1I	TTAA	3 cut(s)	501, 509, 1205
Tru9I	TTAA	3 cut(s)	501, 509, 1205
TscAI	CASTG	5 cut(s)	117, 193, 226, 946, 1012
TseFI	GTSAC	3 cut(s)	112, 217, 937
TseI	GCWGC	7 cut(s)	4, 848, 851, 899, 920, 923, 1120
Tsp45I	GTSAC	3 cut(s)	112, 217, 937
TspDTI	ATGAA	5 cut(s)	51, 385, 450, 740, 888
TspRI	CASTG	5 cut(s)	117, 193, 226, 946, 1012
VneI	GTGCAC	1 cut(s)	1199
XagI	CCTNNNNNAGG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	617
XspI	CTAG	3 cut(s)	140, 1104, 1357
ZrmI	AGTACT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.