Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Reverse (-)

33009444 .. 33012636

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1258000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCGACGATGGATCAAGTGACGGCGGAGATGAAGGAGGAGAAGACATGGGCCGTAACATGGGGTACATTCCTGAATGAGGTGAAGAAGGAAGGTTTTATAGCTGCTCCAATGGTGGCAGTCTCAGTGCTGCAGTATCTGCTGCAACTGGTGTCCATGATAATGGCTGGACATCTTGATCAGCTTGCACTCTCCAGTGTTGCGATTGCCATCTCTCTCACCAATGTCACTGGTTTTAGCCTTCTTTCAGGAATGGCAGGTGGACTGGAAACATTATGTGGGCAAGCATTTGGAGCAGGACAATATCAAAAACTTGGAACTTACACTTGCACTGCAATGATCTCTCTTCTCTTGGTTTGTCCTCCAATATGTGTCCTCTGGATTTTCTTTGACAAATTATTACCCTTAGTAGGCCAAAACCCCCAAATATCACATGAAGCACAAATATACTCAGTTTGGCTAATTCCTGCACTTTTTGGCGGTGCAATTCTTAAGCCTTTAACTCGATATTTCCAGTCTCAGAGTTCAATTTTTCCAATGCTTTTATCCTCCTTTGTCATTCTTCTTTTCCATATTCTTACCTCTTGGGCCTTTATATATAAGCTGGAACTAGGAGTTAAGGGTTCAGCCATATCCTTTAGTTTGTCAACTTGGTTGTATGTGGTACTGCTGTGGTTGTATGCAATGTTTTCTTCATCCTTCGAGGAAACCCGTCTTGCATTTTCTATGGAGTCTTTGGTCCATATTGGACTGTTCTTTCGCTTAGCCGTCCCCTCCGCTGTAATGATTTGTCTTAAATGGTGGTCATGTGAGCTGATTATTTTGCTGTCCGGCCTTCTACCAAATCCAAAGCTGGAGACTTCGGTGCTTTCAATATGTATTCGGGTGTCGAATGAATTAGGAGCTGGCAATCCACAAGCAGCTCGAGTGGCCGTATGGGCTGCAATGTTTCTATCAGTCACTGAGGCAGTTATTGTGAGCACAACTCTCTTCTGCTGCCGCTACGTTCTGGGGCATGTTTTTAGCAGTGAGAAGCCAGTCGTGGATTATGTTGTGGTCATGGCACCTCTGATTTGTATCTCAGTATTCATGGATAGCGTACAAGCTGTTCTTTCAGGTGTTGCTAGAGGAAGTGGATGGCAACATATAGGGGCATATGTGAATCTTGGGGCGTTTTATCTGGTTGGACTTCCTGTGGGTTGTGCACTGGGATTTGCTCTAGGCTTAAGGGGGAAGGGCCTTTGGATTGGAATAGTGGCCGGGTCTGCTGTACAATCTGCTCTTCTTGCTCTTATCACTAGCTTCACCAATTGGACAAAACAGGCAAAGAGGGCAAGGGAGAGGGTATTCGCGGAGCGATTATCAGAAGACAGCGAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

462

Amino Acids

50.19

Weight (kDa)

7.51

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	37 - 196	1.2e-28	MatE
MatE	PF01554	294 - 400	1.2e-16	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	1063
AccII	CGCG	1 cut(s)	1352
AciI	CCGC	5 cut(s)	26, 480, 777, 1000, 1352
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	930, 1257
AfaI	GTAC	4 cut(s)	67, 666, 1101, 1272
AfiI	CCNNNNNNNGG	3 cut(s)	60, 79, 410
AflII	CTTAAG	2 cut(s)	491, 1225
AgsI	TTSAA	2 cut(s)	528, 873
AluBI	AGCT	9 cut(s)	104, 184, 604, 814, 853, 905, 923, 1106, 1302
AluI	AGCT	9 cut(s)	104, 184, 604, 814, 853, 905, 923, 1106, 1302
Alw21I	GWGCWC	2 cut(s)	983, 1207
Alw26I	GTCTC	3 cut(s)	127, 522, 851
Alw44I	GTGCAC	1 cut(s)	1203
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	2 cut(s)	139, 962
Ama87I	CYCGRG	1 cut(s)	924
AoxI	GGCC	7 cut(s)	51, 412, 588, 832, 930, 1237, 1257
ApaLI	GTGCAC	1 cut(s)	1203
ApeKI	GCWGC	6 cut(s)	104, 130, 142, 920, 941, 996
ArsI	GACNNNNNNTTYG	2 cut(s)	741, 773
AspS9I	GGNCC	4 cut(s)	51, 588, 739, 1237
AsuC2I	CCSGG	1 cut(s)	1261
AsuHPI	GGTGA	3 cut(s)	94, 211, 1297
AvaI	CYCGRG	1 cut(s)	924
AvaII	GGWCC	1 cut(s)	739
BaeGI	GKGCMC	1 cut(s)	1207
BaeI	ACNNNNGTAYC	2 cut(s)	656, 689
BanI	GGYRCC	1 cut(s)	1063
BbsI	GAAGAC	2 cut(s)	50, 1374
Bbv12I	GWGCWC	2 cut(s)	983, 1207
BbvI	GCAGC	6 cut(s)	91, 117, 129, 928, 932, 983
BccI	CCATC	3 cut(s)	4, 218, 1131
BceAI	ACGGC	4 cut(s)	38, 39, 752, 917
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	1261
BcoDI	GTCTC	3 cut(s)	127, 522, 851
BfaI	CTAG	4 cut(s)	611, 1125, 1220, 1299
BfmI	CTRYAG	1 cut(s)	131
BfrI	CTTAAG	2 cut(s)	491, 1225
BfuAI	ACCTGC	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	938
BisI	GCNGC	7 cut(s)	105, 131, 143, 921, 942, 997, 1000
BlpI	GCTNAGC	1 cut(s)	763
BlsI	GCNGC	7 cut(s)	106, 132, 144, 922, 943, 998, 1001
Bme1390I	CCNGG	1 cut(s)	1261
Bme18I	GGWCC	1 cut(s)	739
BmeT110I	CYCGRG	1 cut(s)	924
BmgT120I	GGNCC	4 cut(s)	51, 588, 739, 1237
BmiI	GGNNCC	1 cut(s)	1065
BmrFI	CCNGG	1 cut(s)	1261
BmrI	ACTGGG	1 cut(s)	1217
BmuI	ACTGGG	1 cut(s)	1217
BpiI	GAAGAC	2 cut(s)	50, 1374
BplI	GAGNNNNNCTC	2 cut(s)	970, 1002
BpmI	CTGGAG	2 cut(s)	178, 875
Bpu1102I	GCTNAGC	1 cut(s)	763
BpuMI	CCSGG	1 cut(s)	1261
BsaBI	GATNNNNATC	2 cut(s)	209, 1076
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 79, 410
Bse1I	ACTGG	7 cut(s)	153, 195, 235, 270, 514, 1037, 1212
Bse3DI	GCAATG	3 cut(s)	342, 690, 951
Bse8I	GATNNNNATC	2 cut(s)	209, 1076
BseGI	GGATG	2 cut(s)	695, 1142
BseJI	GATNNNNATC	2 cut(s)	209, 1076
BseLI	CCNNNNNNNGG	3 cut(s)	60, 79, 410
BseMI	GCAATG	3 cut(s)	342, 690, 951
BseMII	CTCAG	5 cut(s)	138, 465, 533, 954, 1095
BseNI	ACTGG	7 cut(s)	153, 195, 235, 270, 514, 1037, 1212
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	1207
BseXI	GCAGC	6 cut(s)	91, 117, 129, 928, 932, 983
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	1352
BshFI	GGCC	7 cut(s)	53, 414, 590, 834, 932, 1239, 1259
BshNI	GGYRCC	1 cut(s)	1063
BsiHKAI	GWGCWC	2 cut(s)	983, 1207
BsiHKCI	CYCGRG	1 cut(s)	924
BsiSI	CCGG	2 cut(s)	831, 1260
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	3 cut(s)	60, 79, 410
BsmAI	GTCTC	3 cut(s)	127, 522, 851
BsmFI	GGGAC	1 cut(s)	755
BsnI	GGCC	7 cut(s)	53, 414, 590, 834, 932, 1239, 1259
BsoBI	CYCGRG	1 cut(s)	924
Bsp1286I	GDGCHC	2 cut(s)	983, 1207
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp143I	GATC	3 cut(s)	13, 178, 339
Bsp1720I	GCTNAGC	1 cut(s)	763
BspACI	CCGC	5 cut(s)	26, 480, 777, 1000, 1352
BspANI	GGCC	7 cut(s)	53, 414, 590, 834, 932, 1239, 1259
BspCNI	CTCAG	5 cut(s)	137, 464, 532, 955, 1094
BspFNI	CGCG	1 cut(s)	1352
BspLI	GGNNCC	1 cut(s)	1065
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	1287
BspT107I	GGYRCC	1 cut(s)	1063
BspTI	CTTAAG	2 cut(s)	491, 1225
BsrDI	GCAATG	3 cut(s)	342, 690, 951
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	7 cut(s)	153, 195, 235, 270, 514, 1037, 1212
BssMI	GATC	3 cut(s)	13, 178, 339
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	3 cut(s)	351, 995, 1287
BstAFI	CTTAAG	2 cut(s)	491, 1225
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	1270
BstC8I	GCNNGC	3 cut(s)	186, 285, 907
BstDEI	CTNAG	7 cut(s)	124, 406, 451, 519, 763, 963, 1081
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	695, 1142
BstFNI	CGCG	1 cut(s)	1352
BstKTI	GATC	3 cut(s)	16, 181, 342
BstMAI	GTCTC	3 cut(s)	127, 522, 851
BstMBI	GATC	3 cut(s)	13, 178, 339
BstMWI	GCNNNNNNNGC	7 cut(s)	139, 293, 929, 938, 1265, 1286, 1331
BstNSI	RCATGY	1 cut(s)	1019
BstSCI	CCNGG	1 cut(s)	1259
BstSFI	CTRYAG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	1207
BstUI	CGCG	1 cut(s)	1352
BstV1I	GCAGC	6 cut(s)	91, 117, 129, 928, 932, 983
BstV2I	GAAGAC	2 cut(s)	50, 1374
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuRI	GGCC	7 cut(s)	53, 414, 590, 834, 932, 1239, 1259
BtsCI	GGATG	2 cut(s)	695, 1142
BtsI	GCAGTG	2 cut(s)	330, 1033
BtsIMutI	CAGTG	7 cut(s)	132, 202, 228, 330, 960, 1033, 1205
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	186, 285, 907
CaiI	CAGNNNCTG	2 cut(s)	139, 962
Cfr13I	GGNCC	4 cut(s)	51, 588, 739, 1237
Csp6I	GTAC	4 cut(s)	66, 665, 1100, 1271
CviAII	CATG	8 cut(s)	48, 60, 157, 434, 807, 1016, 1060, 1090
CviQI	GTAC	4 cut(s)	66, 665, 1100, 1271
DdeI	CTNAG	7 cut(s)	124, 406, 451, 519, 763, 963, 1081
DpnI	GATC	3 cut(s)	15, 180, 341
DpnII	GATC	3 cut(s)	13, 178, 339
EaeI	YGGCCR	2 cut(s)	930, 1257
Eam1104I	CTCTTC	3 cut(s)	351, 995, 1287
EarI	CTCTTC	3 cut(s)	351, 995, 1287
EciI	GGCGGA	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	924
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	1237
FaeI	CATG	8 cut(s)	51, 63, 160, 437, 810, 1019, 1063, 1093
FalI	AAGNNNNNCTT	2 cut(s)	1095, 1127
FaqI	GGGAC	1 cut(s)	755
FatI	CATG	8 cut(s)	47, 59, 156, 433, 806, 1015, 1059, 1089
FauNDI	CATATG	1 cut(s)	1156
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	7 cut(s)	105, 131, 143, 921, 942, 997, 1000
FokI	GGATG	2 cut(s)	682, 1149
Fsp4HI	GCNGC	7 cut(s)	105, 131, 143, 921, 942, 997, 1000
FspBI	CTAG	4 cut(s)	611, 1125, 1220, 1299
GluI	GCNGC	7 cut(s)	105, 131, 143, 921, 942, 997, 1000
GsuI	CTGGAG	2 cut(s)	178, 875
HaeIII	GGCC	7 cut(s)	53, 414, 590, 834, 932, 1239, 1259
HapII	CCGG	2 cut(s)	831, 1260
Hin1II	CATG	8 cut(s)	51, 63, 160, 437, 810, 1019, 1063, 1093
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	731, 1162
HpaII	CCGG	2 cut(s)	831, 1260
HphI	GGTGA	3 cut(s)	94, 211, 1297
Hpy166II	GTNNAC	3 cut(s)	263, 648, 1205
Hpy188I	TCNGA	3 cut(s)	522, 1071, 1366
Hpy188III	TCNNGA	4 cut(s)	73, 176, 249, 379
Hpy8I	GTNNAC	3 cut(s)	263, 648, 1205
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	7 cut(s)	28, 82, 86, 251, 709, 845, 1228
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4IV	ACGT	1 cut(s)	1005
HpyF10VI	GCNNNNNNNGC	7 cut(s)	139, 293, 929, 938, 1265, 1286, 1331
HpyF3I	CTNAG	7 cut(s)	124, 406, 451, 519, 763, 963, 1081
HpySE526I	ACGT	1 cut(s)	1005
Hsp92II	CATG	8 cut(s)	51, 63, 160, 437, 810, 1019, 1063, 1093
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	13, 178, 339
LguI	GCTCTTC	1 cut(s)	1287
LmnI	GCTCC	4 cut(s)	112, 293, 902, 1354
Lsp1109I	GCAGC	6 cut(s)	91, 117, 129, 928, 932, 983
MaeI	CTAG	4 cut(s)	611, 1125, 1220, 1299
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	4 cut(s)	19, 55, 226, 958
MalI	GATC	3 cut(s)	15, 180, 341
MboI	GATC	3 cut(s)	13, 178, 339
MboII	GAAGA	8 cut(s)	55, 97, 338, 554, 684, 982, 1274, 1379
MfeI	CAATTG	1 cut(s)	1309
MhlI	GDGCHC	2 cut(s)	983, 1207
MluCI	AATT	7 cut(s)	395, 462, 486, 528, 896, 1309, 1381
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	1 cut(s)	1165
MseI	TTAA	5 cut(s)	492, 500, 618, 795, 1226
MslI	CAYNNNNRTG	2 cut(s)	161, 335
MspA1I	CMGCKG	1 cut(s)	779
MspCI	CTTAAG	2 cut(s)	491, 1225
MspI	CCGG	2 cut(s)	831, 1260
MspR9I	CCNGG	1 cut(s)	1261
MunI	CAATTG	1 cut(s)	1309
MvnI	CGCG	1 cut(s)	1352
MwoI	GCNNNNNNNGC	7 cut(s)	139, 293, 929, 938, 1265, 1286, 1331
NciI	CCSGG	1 cut(s)	1261
NdeI	CATATG	1 cut(s)	1156
NdeII	GATC	3 cut(s)	13, 178, 339
NlaIII	CATG	8 cut(s)	51, 63, 160, 437, 810, 1019, 1063, 1093
NlaIV	GGNNCC	1 cut(s)	1065
NmuCI	GTSAC	3 cut(s)	19, 226, 958
NspI	RCATGY	1 cut(s)	1019
PaeR7I	CTCGAG	1 cut(s)	924
PaqCI	CACCTGC	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	1287
PfeI	GAWTC	1 cut(s)	1162
PkrI	GCNGC	7 cut(s)	106, 132, 144, 922, 943, 998, 1001
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	1065
PspPI	GGNCC	4 cut(s)	51, 588, 739, 1237
PspXI	VCTCGAGB	1 cut(s)	924
PsrI	GAACNNNNNNTAC	2 cut(s)	1092, 1124
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	2 cut(s)	139, 962
RsaI	GTAC	4 cut(s)	67, 666, 1101, 1272
RsaNI	GTAC	4 cut(s)	66, 665, 1100, 1271
RseI	CAYNNNNRTG	2 cut(s)	161, 335
SapI	GCTCTTC	1 cut(s)	1287
SaqAI	TTAA	5 cut(s)	492, 500, 618, 795, 1226
SatI	GCNGC	7 cut(s)	105, 131, 143, 921, 942, 997, 1000
Sau3AI	GATC	3 cut(s)	13, 178, 339
Sau96I	GGNCC	4 cut(s)	51, 588, 739, 1237
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	1 cut(s)	1261
SduI	GDGCHC	2 cut(s)	983, 1207
SfcI	CTRYAG	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	739
SlaI	CTCGAG	1 cut(s)	924
SmiMI	CAYNNNNRTG	2 cut(s)	161, 335
SmlI	CTYRAG	3 cut(s)	491, 924, 1225
SmoI	CTYRAG	3 cut(s)	491, 924, 1225
Sse9I	AATT	7 cut(s)	395, 462, 486, 528, 896, 1309, 1381
SsiI	CCGC	5 cut(s)	26, 480, 777, 1000, 1352
SspMI	CTAG	4 cut(s)	611, 1125, 1220, 1299
StyD4I	CCNGG	1 cut(s)	1259
TaaI	ACNGT	1 cut(s)	753
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	4 cut(s)	505, 702, 890, 925
TasI	AATT	7 cut(s)	395, 462, 486, 528, 896, 1309, 1381
TatI	WGTACW	1 cut(s)	1270
TauI	GCSGC	1 cut(s)	1002
TfiI	GAWTC	1 cut(s)	1162
Tru1I	TTAA	5 cut(s)	492, 500, 618, 795, 1226
Tru9I	TTAA	5 cut(s)	492, 500, 618, 795, 1226
TscAI	CASTG	7 cut(s)	132, 202, 235, 337, 967, 1033, 1212
TseFI	GTSAC	3 cut(s)	19, 226, 958
TseI	GCWGC	6 cut(s)	104, 130, 142, 920, 941, 996
Tsp45I	GTSAC	3 cut(s)	19, 226, 958
TspDTI	ATGAA	5 cut(s)	47, 450, 684, 909, 1078
TspRI	CASTG	7 cut(s)	132, 202, 235, 337, 967, 1033, 1212
Vha464I	CTTAAG	2 cut(s)	491, 1225
VneI	GTGCAC	1 cut(s)	1203
VpaK11BI	GGWCC	1 cut(s)	739
XagI	CCTNNNNNAGG	1 cut(s)	77
XceI	RCATGY	1 cut(s)	1019
XhoI	CTCGAG	1 cut(s)	924
XspI	CTAG	4 cut(s)	611, 1125, 1220, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.