RchiOBHm_Chr4g0414801

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
39348203 .. 39350560
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38514

Sequence Viewer

Length: 1431 bp
ATGCAGCAGAAACTAGAAATGGGACAGATGGTTGATGAAGATAAGAAATGGACGATTACATTTGCGAGAGAGTTGAAGAAGGAGGGTATTATAGCTGCACCAATGGTTGCAGTGACGGTACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCGCTATCCAGTGTAGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTCAGTCTGGATTGGCAGGTGGATTGGAAACCTTATGCGGGCAAGCATTTGGAGCAGAGCAATACCAAAAACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTCCTATGGATATTCATGGATAAATTTTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATTCCTGCACTATTTGGTGCTTCAATTATTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTCATTTTCCCAATGCTCCTATCCTCTTTTGCCATTCTTCTCTTTCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGGATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTGATGCTGGGTTCCCATGTAATGTATTCCTCAGTCTTCGAGAAAACCCGTATTACAATTTCAAAAGATTCTATTCTTCATGTTGGAGAGTTCTTTCGCTTGGCTATCCCGTCTGCTGTAATGGTTTGTCTGAAATGGTGGTCGTGCGAGCTACTTATTTTGCTGTCAGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCCATATGCCTTACAATCTCTACTTTGCACTTCACTTTATCATATGGATTTGGAGCTGCTGCAAGTACTCGGGTATCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAGGCGATTATTGTAAGCACAACCCTCTTTTGCTGTCGCTATGTTTTGGGGAGTGCTTTCAGCAGTGAGACGCAGGTAGCGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTACTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTGGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTACTCGGGTTTCCTGTGCATTTAAGGGGGAAAGGCCTTTGGATTGGAATAGTGGTCGGCTCTGTTGTGCAATCAACTCTTCTGGGTTGCATCACCTATTCCACAAATTGGACTAAACAGGTTCATAACTCTATTTTAGATCATATCAACCAATTCATTTTACATGAACTTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

476

Amino Acids

51.81

Weight (kDa)

8.42

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 34 - 193 2.3e-25 MatE
MatE PF01554 256 - 418 5.4e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
Acc36I ACCTGC 2 cut(s) 242, 1078
AccB7I CCANNNNNTGG 1 cut(s) 1362
AciI CCGC 2 cut(s) 273, 1094
AclWI GGATC 2 cut(s) 407, 420
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 4 cut(s) 221, 413, 616, 840
AfaI GTAC 5 cut(s) 120, 325, 931, 1161, 1257
AfiI CCNNNNNNNGG 3 cut(s) 273, 404, 1362
AgsI TTSAA 4 cut(s) 76, 447, 480, 720
AhlI ACTAGT 1 cut(s) 139
AjnI CCWGG 1 cut(s) 408
Alw26I GTCTC 5 cut(s) 371, 516, 524, 845, 1076
AlwI GGATC 2 cut(s) 407, 420
AlwNI CAGNNNCTG 1 cut(s) 1013
Ama87I CYCGRG 3 cut(s) 933, 975, 1259
AoxI GGCC 3 cut(s) 406, 826, 1288
ApeKI GCWGC 7 cut(s) 4, 95, 920, 923, 971, 992, 1192
ApoI RAATTY 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 202, 670, 1339
AvaI CYCGRG 3 cut(s) 933, 975, 1259
BaeI ACNNNNGTAYC 8 cut(s) 110, 110, 143, 143, 921, 954, 1247, 1280
BamHI GGATCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 685
BbvI GCAGC 7 cut(s) 16, 82, 907, 910, 979, 983, 1204
BccI CCATC 2 cut(s) 22, 1182
BciT130I CCWGG 1 cut(s) 410
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 5 cut(s) 371, 516, 524, 845, 1076
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 4 cut(s) 14, 140, 848, 1176
BfmI CTRYAG 2 cut(s) 122, 993
BfuAI ACCTGC 2 cut(s) 242, 1078
BglI GCCNNNNNGGC 1 cut(s) 581
BisI GCNGC 7 cut(s) 5, 96, 921, 924, 972, 993, 1193
BlsI GCNGC 7 cut(s) 6, 97, 922, 925, 973, 994, 1194
BmcAI AGTACT 2 cut(s) 931, 1161
Bme1390I CCNGG 1 cut(s) 410
BmeT110I CYCGRG 3 cut(s) 933, 975, 1259
BmiI GGNNCC 2 cut(s) 414, 670
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 651, 1353
BpiI GAAGAC 1 cut(s) 685
BpmI CTGGAG 1 cut(s) 342
Bsa29I ATCGAT 1 cut(s) 146
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 404, 1362
Bse1I ACTGG 4 cut(s) 186, 226, 359, 508
BseBI CCWGG 1 cut(s) 410
BseCI ATCGAT 1 cut(s) 146
BseGI GGATG 1 cut(s) 1193
BseLI CCNNNNNNNGG 3 cut(s) 273, 404, 1362
BseMII CTCAG 6 cut(s) 527, 702, 1005, 1020, 1146, 1179
BseNI ACTGG 4 cut(s) 186, 226, 359, 508
BseXI GCAGC 7 cut(s) 16, 82, 907, 910, 979, 983, 1204
BseYI CCCAGC 2 cut(s) 598, 664
BsgI GTGCAG 2 cut(s) 81, 447
BshFI GGCC 3 cut(s) 408, 828, 1290
BshVI ATCGAT 1 cut(s) 146
BsiHKCI CYCGRG 3 cut(s) 933, 975, 1259
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 273, 404, 1362
BsmAI GTCTC 5 cut(s) 371, 516, 524, 845, 1076
BsmBI CGTCTC 1 cut(s) 1076
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 3 cut(s) 408, 828, 1290
BsoBI CYCGRG 3 cut(s) 933, 975, 1259
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 3 cut(s) 169, 412, 1393
BspACI CCGC 2 cut(s) 273, 1094
BspANI GGCC 3 cut(s) 408, 828, 1290
BspCNI CTCAG 6 cut(s) 526, 701, 1006, 1019, 1145, 1178
BspDI ATCGAT 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 414, 670
BspMAI CTGCAG 2 cut(s) 126, 997
BspMI ACCTGC 2 cut(s) 242, 1078
BspPI GGATC 2 cut(s) 407, 420
BsrI ACTGG 4 cut(s) 186, 226, 359, 508
BssMI GATC 3 cut(s) 169, 412, 1393
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 118, 492
Bst6I CTCTTC 1 cut(s) 1338
BstC8I GCNNGC 4 cut(s) 275, 279, 436, 806
BstDEI CTNAG 6 cut(s) 513, 688, 1006, 1014, 1132, 1165
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 1193
BstKTI GATC 3 cut(s) 172, 415, 1396
BstMAI GTCTC 5 cut(s) 371, 516, 524, 845, 1076
BstMBI GATC 3 cut(s) 169, 412, 1393
BstMWI GCNNNNNNNGC 4 cut(s) 287, 581, 980, 989
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 2 cut(s) 122, 993
BstV1I GCAGC 7 cut(s) 16, 82, 907, 910, 979, 983, 1204
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 308
BstYI RGATCY 1 cut(s) 412
Bsu15I ATCGAT 1 cut(s) 146
BsuRI GGCC 3 cut(s) 408, 828, 1290
BsuTUI ATCGAT 1 cut(s) 146
BtsCI GGATG 1 cut(s) 1193
BtsI GCAGTG 3 cut(s) 117, 1002, 1084
BtsIMutI CAGTG 6 cut(s) 117, 193, 219, 1002, 1011, 1084
BveI ACCTGC 2 cut(s) 242, 1078
Cac8I GCNNGC 4 cut(s) 275, 279, 436, 806
CaiI CAGNNNCTG 1 cut(s) 1013
ClaI ATCGAT 1 cut(s) 146
CseI GACGC 1 cut(s) 1093
Csp6I GTAC 5 cut(s) 119, 324, 930, 1160, 1256
CviAII CATG 5 cut(s) 382, 579, 674, 737, 1418
CviQI GTAC 5 cut(s) 119, 324, 930, 1160, 1256
DdeI CTNAG 6 cut(s) 513, 688, 1006, 1014, 1132, 1165
DpnI GATC 3 cut(s) 171, 414, 1395
DpnII GATC 3 cut(s) 169, 412, 1393
Eam1104I CTCTTC 1 cut(s) 1338
EarI CTCTTC 1 cut(s) 1338
Eco147I AGGCCT 2 cut(s) 828, 1290
Eco24I GRGCYC 1 cut(s) 586
Eco32I GATATC 2 cut(s) 336, 423
Eco57I CTGAAG 4 cut(s) 221, 413, 616, 840
Eco88I CYCGRG 3 cut(s) 933, 975, 1259
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 408
EcoRV GATATC 2 cut(s) 336, 423
EcoT38I GRGCYC 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 1076
FaeI CATG 5 cut(s) 385, 582, 677, 740, 1421
FaqI GGGAC 1 cut(s) 36
FatI CATG 5 cut(s) 381, 578, 673, 736, 1417
FauI CCCGC 1 cut(s) 266
FauNDI CATATG 2 cut(s) 869, 907
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 7 cut(s) 5, 96, 921, 924, 972, 993, 1193
FokI GGATG 1 cut(s) 1200
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 7 cut(s) 5, 96, 921, 924, 972, 993, 1193
FspBI CTAG 4 cut(s) 14, 140, 848, 1176
GluI GCNGC 7 cut(s) 5, 96, 921, 924, 972, 993, 1193
GsaI CCCAGC 2 cut(s) 602, 668
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 3 cut(s) 408, 828, 1290
HgaI GACGC 1 cut(s) 1093
Hin1II CATG 5 cut(s) 385, 582, 677, 740, 1421
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HinfI GANTC 2 cut(s) 517, 725
HpaI GTTAAC 1 cut(s) 495
HphI GGTGA 3 cut(s) 202, 670, 1339
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 4 cut(s) 161, 516, 789, 1122
Hpy188III TCNNGA 3 cut(s) 167, 243, 697
Hpy8I GTNNAC 1 cut(s) 495
HpyAV CCTTC 5 cut(s) 73, 242, 437, 640, 839
HpyCH4III ACNGT 2 cut(s) 118, 492
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 581, 980, 989
HpyF3I CTNAG 6 cut(s) 513, 688, 1006, 1014, 1132, 1165
Hsp92II CATG 5 cut(s) 385, 582, 677, 740, 1421
Ksp22I TGATCA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 495
Kzo9I GATC 3 cut(s) 169, 412, 1393
LmnI GCTCC 4 cut(s) 287, 540, 917, 953
Lsp1109I GCAGC 7 cut(s) 16, 82, 907, 910, 979, 983, 1204
LweI GCATC 2 cut(s) 651, 1353
MaeI CTAG 4 cut(s) 14, 140, 848, 1176
MaeIII GTNAC 3 cut(s) 112, 217, 1009
MalI GATC 3 cut(s) 171, 414, 1395
MboI GATC 3 cut(s) 169, 412, 1393
MboII GAAGA 8 cut(s) 50, 88, 122, 227, 548, 685, 725, 1325
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 7 cut(s) 195, 389, 480, 714, 947, 1360, 1406
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 3 cut(s) 139, 721, 1216
MseI TTAA 3 cut(s) 486, 494, 1277
MspR9I CCNGG 1 cut(s) 410
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 4 cut(s) 287, 581, 980, 989
NdeI CATATG 2 cut(s) 869, 907
NdeII GATC 3 cut(s) 169, 412, 1393
NlaIII CATG 5 cut(s) 385, 582, 677, 740, 1421
NlaIV GGNNCC 2 cut(s) 414, 670
NmuCI GTSAC 3 cut(s) 112, 217, 1009
PaeR7I CTCGAG 1 cut(s) 975
PaqCI CACCTGC 1 cut(s) 242
PceI AGGCCT 2 cut(s) 828, 1290
PfeI GAWTC 1 cut(s) 725
PflMI CCANNNNNTGG 1 cut(s) 1362
PkrI GCNGC 7 cut(s) 6, 97, 922, 925, 973, 994, 1194
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 2 cut(s) 598, 664
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 414, 670
PspXI VCTCGAGB 1 cut(s) 975
PstI CTGCAG 2 cut(s) 126, 997
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 5 cut(s) 120, 325, 931, 1161, 1257
RsaNI GTAC 5 cut(s) 119, 324, 930, 1160, 1256
SaqAI TTAA 3 cut(s) 486, 494, 1277
SatI GCNGC 7 cut(s) 5, 96, 921, 924, 972, 993, 1193
Sau3AI GATC 3 cut(s) 169, 412, 1393
ScaI AGTACT 2 cut(s) 931, 1161
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 2 cut(s) 651, 1353
SfcI CTRYAG 2 cut(s) 122, 993
Sfr274I CTCGAG 1 cut(s) 975
SlaI CTCGAG 1 cut(s) 975
SmlI CTYRAG 1 cut(s) 975
SmoI CTYRAG 1 cut(s) 975
SpeI ACTAGT 1 cut(s) 139
Sse9I AATT 7 cut(s) 195, 389, 480, 714, 947, 1360, 1406
SseBI AGGCCT 2 cut(s) 828, 1290
SsiI CCGC 2 cut(s) 273, 1094
SspI AATATT 1 cut(s) 443
SspMI CTAG 4 cut(s) 14, 140, 848, 1176
StuI AGGCCT 2 cut(s) 828, 1290
StyD4I CCNGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 118, 492
TaqI TCGA 3 cut(s) 146, 696, 976
TasI AATT 7 cut(s) 195, 389, 480, 714, 947, 1360, 1406
TatI WGTACW 3 cut(s) 323, 929, 1159
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 3 cut(s) 486, 494, 1277
Tru9I TTAA 3 cut(s) 486, 494, 1277
TscAI CASTG 6 cut(s) 117, 193, 226, 1002, 1018, 1084
TseFI GTSAC 3 cut(s) 112, 217, 1009
TseI GCWGC 7 cut(s) 4, 95, 920, 923, 971, 992, 1192
Tsp45I GTSAC 3 cut(s) 112, 217, 1009
TspDTI ATGAA 7 cut(s) 51, 370, 554, 725, 960, 1367, 1399
TspRI CASTG 6 cut(s) 117, 193, 226, 1002, 1018, 1084
Van91I CCANNNNNTGG 1 cut(s) 1362
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 975
XspI CTAG 4 cut(s) 14, 140, 848, 1176
ZrmI AGTACT 2 cut(s) 931, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.