Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

29645286 .. 29645825

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0291100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCTTCGACAACTCATCGTCTGCGATCAAACCAGACGAATCGACTGAAAATGGCAGCGTTTCGGCCCCCGAGGCTAAAATTGATGTCGAGAATGCAAAGCTACGACGAACAAGGACTATCCGAGCGGCGAGTTTCAGTTTCAGGAGGCGAGCCTCTGGAAGAGCTTCGTCGTCAAGCTTCGAATGCTCTTTGCTTATCCTTGGGAGCGGGTCAAGAAAGGAAGTGTCTTGACCATGACATTGCGCTGCGAGCTGATCAGTTAAAGAGTCGATTCTGTAGTGGATTATCGCTACCTCAAATTTGTGAGAATTTTGTGAAAGCAGCATGTGATCCTCGAATTGCTGGTGTGTATCTTCAAATTGAGAGCTTGAACTGTGGTTGGGGTACAGTGGAAGATGTTGTGAATTGTGATTATGTGTTTCGAACTTCAATTTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

8.69

Isoelectric Point (pI)

62.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	127, 209
AciI	CCGC	2 cut(s)	127, 209
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	300, 310
AfaI	GTAC	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	359, 373, 432
AluBI	AGCT	5 cut(s)	102, 166, 179, 254, 369
AluI	AGCT	5 cut(s)	102, 166, 179, 254, 369
AlwI	GGATC	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	56, 247, 323
ApoI	RAATTY	2 cut(s)	300, 310
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	66
AsuII	TTCGAA	2 cut(s)	182, 424
AvaI	CYCGRG	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	68, 234, 335
BclI	TGATCA	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	277
BglI	GCCNNNNNGGC	1 cut(s)	73
BisI	GCNGC	4 cut(s)	57, 128, 248, 324
BlsI	GCNGC	4 cut(s)	58, 129, 249, 325
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	68
Bpu14I	TTCGAA	2 cut(s)	182, 424
BsaJI	CCNNGG	2 cut(s)	71, 201
Bse3DI	GCAATG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	71, 201
BseMI	GCAATG	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	68, 234, 335
BshFI	GGCC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	70
BsmI	GAATGC	2 cut(s)	99, 190
BsnI	GGCC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	70
Bsp119I	TTCGAA	2 cut(s)	182, 424
Bsp143I	GATC	3 cut(s)	26, 256, 331
BspACI	CCGC	2 cut(s)	127, 209
BspANI	GGCC	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	156
BspT104I	TTCGAA	2 cut(s)	182, 424
BsrBI	CCGCTC	2 cut(s)	127, 209
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	71, 201
BssMI	GATC	3 cut(s)	26, 256, 331
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	377, 391
Bst6I	CTCTTC	1 cut(s)	156
BstBI	TTCGAA	2 cut(s)	182, 424
BstC8I	GCNNGC	2 cut(s)	152, 252
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	3 cut(s)	29, 259, 334
BstMBI	GATC	3 cut(s)	26, 256, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 185, 251
BstNSI	RCATGY	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	3 cut(s)	68, 234, 335
BsuRI	GGCC	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	152, 252
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	2 cut(s)	236, 327
CviJI	RGCY	8 cut(s)	67, 76, 102, 154, 166, 179, 254, 369
CviKI_1	RGCY	8 cut(s)	67, 76, 102, 154, 166, 179, 254, 369
CviQI	GTAC	1 cut(s)	387
DpnI	GATC	3 cut(s)	28, 258, 333
DpnII	GATC	3 cut(s)	26, 256, 331
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	239, 330
FaiI	YATR	3 cut(s)	237, 328, 417
FatI	CATG	2 cut(s)	235, 326
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	57, 128, 248, 324
Fsp4HI	GCNGC	4 cut(s)	57, 128, 248, 324
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	4 cut(s)	57, 128, 248, 324
HaeIII	GGCC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	239, 330
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	3 cut(s)	40, 268, 273
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	5 cut(s)	90, 144, 158, 215, 230
Hpy99I	CGWCG	2 cut(s)	110, 174
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	377, 391
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 185, 251
Hsp92II	CATG	2 cut(s)	239, 330
HspAI	GCGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	26, 256, 331
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	4 cut(s)	47, 129, 143, 330
Lsp1109I	GCAGC	3 cut(s)	68, 234, 335
MalI	GATC	3 cut(s)	28, 258, 333
MbiI	CCGCTC	2 cut(s)	127, 209
MboI	GATC	3 cut(s)	26, 256, 331
MboII	GAAGA	3 cut(s)	173, 347, 407
MluCI	AATT	7 cut(s)	80, 300, 310, 339, 360, 406, 432
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	5 cut(s)	66, 140, 165, 306, 345
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	263
Mva1269I	GAATGC	2 cut(s)	99, 190
MwoI	GCNNNNNNNGC	3 cut(s)	73, 185, 251
NdeII	GATC	3 cut(s)	26, 256, 331
NlaIII	CATG	2 cut(s)	239, 330
NlaIV	GGNNCC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	330
NspV	TTCGAA	2 cut(s)	182, 424
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	2 cut(s)	99, 190
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	40, 273
PkrI	GCNGC	4 cut(s)	58, 129, 249, 325
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	4 cut(s)	57, 128, 248, 324
Sau3AI	GATC	3 cut(s)	26, 256, 331
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	277
SetI	ASST	6 cut(s)	104, 168, 181, 256, 298, 371
SfcI	CTRYAG	1 cut(s)	277
SfuI	TTCGAA	2 cut(s)	182, 424
Sse9I	AATT	7 cut(s)	80, 300, 310, 339, 360, 406, 432
SsiI	CCGC	2 cut(s)	127, 209
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	377, 391
TaqI	TCGA	7 cut(s)	8, 43, 89, 182, 271, 337, 424
TasI	AATT	7 cut(s)	80, 300, 310, 339, 360, 406, 432
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	2 cut(s)	40, 273
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	3 cut(s)	56, 247, 323
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	2 cut(s)	300, 310
XceI	RCATGY	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.