Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

2473082 .. 2474127

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1034500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGCCGAGCCGAGAGAGACCAACTGACTCGAACTCTCAATCACCACCTCAACACCGTCCACGAGACCTTCCAGGTGTTGGATCAAACCGCACCTTCAACACTTGAGAAGGTGAGCTGGGTGGAGGTCACAAAGATGGGCGATCAAGTCTCCAAACAAGCTACCATTTGTAATTGGAATGCTTTGGACCGGAGGAGAAACACCGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

71

Amino Acids

8.04

Weight (kDa)

8.0

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	2 cut(s)	90, 204
AclWI	GGATC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	117, 161
AluI	AGCT	2 cut(s)	117, 161
Alw26I	GTCTC	3 cut(s)	12, 59, 154
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	4, 187
AsuHPI	GGTGA	2 cut(s)	35, 124
AvaII	GGWCC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	62
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	3 cut(s)	12, 59, 154
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	4, 187
BmrFI	CCNGG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	125
BsaI	GGTCTC	2 cut(s)	12, 59
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	3 cut(s)	12, 59, 154
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	2 cut(s)	12, 59
Bsp143I	GATC	2 cut(s)	82, 142
BspACI	CCGC	2 cut(s)	90, 204
BspANI	GGCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	90
BspTNI	GGTCTC	2 cut(s)	12, 59
BssMI	GATC	2 cut(s)	82, 142
BssSI	CACGAG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	58
BstKTI	GATC	2 cut(s)	85, 145
BstMAI	GTCTC	3 cut(s)	12, 59, 154
BstMBI	GATC	2 cut(s)	82, 142
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	4, 187
CviJI	RGCY	4 cut(s)	6, 11, 117, 161
CviKI_1	RGCY	4 cut(s)	6, 11, 117, 161
DpnI	GATC	2 cut(s)	84, 144
DpnII	GATC	2 cut(s)	82, 142
Eco31I	GGTCTC	2 cut(s)	12, 59
Eco47I	GGWCC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	35, 124
Hpy166II	GTNNAC	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	79, 103, 105
HpyCH4III	ACNGT	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	82, 142
LpnPI	CCDG	4 cut(s)	59, 86, 103, 203
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	84, 144
MboI	GATC	2 cut(s)	82, 142
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	59, 118, 186
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	82, 142
NmeAIII	GCCGAG	2 cut(s)	32, 37
NmuCI	GTSAC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	79
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	4, 187
RseI	CAYNNNNRTG	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	82, 142
Sau96I	GGNCC	2 cut(s)	4, 187
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	8 cut(s)	51, 71, 78, 97, 114, 119, 129, 163
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	90, 204
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.