Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Reverse (-)

16361512 .. 16365600

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G149900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGCAGAAGAAGGAAATGGATAAGGAAATCGCGGAGACGGTTGAAGACGAGAAGACATGGGAGGTGACATGGGGAACATTTGGGAGAGAGCTGAAGAAGGAAGGCTCTATAGCTGCTCCAATGGTGGCGGTCTCAGTGTTGCAGTATCTTCTGCAGTTTGTTTCCATGATAATGGTTGGGCATCTTGATCAGCTCTCTCTCTCTAGTGTTGCCATTGCCATTTCTCTCACCAATGTCACTGGTTTTAGCCTGCTTTCGGGAATGGCTGGTGGATTGGAAACTCTATGTGGGCAAGCATTTGGAGCAGGACAATATCACAAACTTGGAACTTACACTTGCACTGCAATGCTCTCTCTTCTCTTGGTTTGCCCCCCAATATGTGTCCTCTGGATTTTCTTTGACAAATTGTTACCCTTAGTAGGCCAAGACCCCCTAATATCCCTTGAAGCACGCAAATACTCTGTTTGGCTGATCCCGGCACTATTTGCTGGTGCAATTCTCAAACCGTTAACTCGCTACTTGCAGTCTCAGAGTTCAATTTTTCCAATGCTCCTGTCCTCCTTTGCCATTCTACTTTTCCATATACTTGCAAGTTGGGGTTTTGTATATAAGGTGGGCTTGGGAAGCAAAGGTGCAGCCATTGCCTTTAGCATGTCCACTTGGTTGTATGTGATATTGCTGTTGTTCTATGCTTTAATTTCTTCCGCGTTTGAGAAGACCCGTATTACATTTTCTATGGAGTCTCTTCTCCACATTCGACAGTTCTTTCGCTTAGCTGTCCCTTCGGCTGTAATGGTTTGTCTTAAATGGTGGTCATGTGAGCTGATTATTTTGCTGTCCGGCCTTCTACCAAATCCGAAGCTGGAGACTTCAGTACTTTCCATATGCCTTACAATCTCTACATTGCACTTCACCATATCATACGGATTCGGAGCTGCTGCGAGCATTCGGGTGTCAAATGAATTAGGAGCTGATAATCCACAAGCAGCTCGAGTGGCTGTTTGGGCTGCCATGTTTCTTTCTGTCACCGAGGCAGTTATTGTGAGCACAACTCTCTTCTTCTGCCGCCATGTTTTGGGGCATGTTTTTAGTAGTGAGAAGCCGGTCGTCGATTATATTGCAGTCATGGCACCTCTCATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCGGTTCTTTCAGGGATAGCTAGAGGAAGTGGATGGCAGAGTATAGGGGCATATGTGAATCTTGGGGCATTTTATCTAGTTGGACTTCCAGTGGGTGTTGTGCTCGGATTTCCTCTACGCTTAAGGGGAAAGGGCCTTTGGATTGGAATTGTGGCCGGATCCATTGTGCAATCAGCTCTTCTTGCTCTTGTCACAGGTTTCACCAATTGGTCAAAACAGGCAACGAGGGCAAGGGAGAGGGTATTCGTGGAGAGGTTATCAGAAGACAGCGAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

484

Amino Acids

52.66

Weight (kDa)

8.49

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1129
AccB7I	CCANNNNNTGG	1 cut(s)	1075
AccII	CGCG	2 cut(s)	32, 707
AciI	CCGC	5 cut(s)	32, 128, 705, 1066, 1172
AclWI	GGATC	3 cut(s)	466, 1323, 1336
AcoI	YGGCCR	1 cut(s)	1323
AcuI	CTGAAG	2 cut(s)	113, 855
AfaI	GTAC	1 cut(s)	876
AfiI	CCNNNNNNNGG	3 cut(s)	256, 419, 1075
AflII	CTTAAG	1 cut(s)	1291
AgsI	TTSAA	3 cut(s)	44, 446, 537
AjuI	GAANNNNNNNTTGG	2 cut(s)	1291, 1323
Alw21I	GWGCWC	2 cut(s)	1049, 1275
Alw26I	GTCTC	5 cut(s)	29, 136, 531, 747, 860
AlwI	GGATC	3 cut(s)	466, 1323, 1336
Ama87I	CYCGRG	1 cut(s)	990
AoxI	GGCC	4 cut(s)	421, 841, 1303, 1323
ApeKI	GCWGC	6 cut(s)	113, 635, 935, 938, 986, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	750, 782
AspS9I	GGNCC	1 cut(s)	1303
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	5 cut(s)	76, 220, 904, 1018, 1363
AvaI	CYCGRG	1 cut(s)	990
BamHI	GGATCC	1 cut(s)	1328
BanI	GGYRCC	1 cut(s)	1129
BbsI	GAAGAC	4 cut(s)	51, 59, 722, 1440
Bbv12I	GWGCWC	2 cut(s)	1049, 1275
BbvI	GCAGC	6 cut(s)	100, 647, 922, 925, 994, 998
BccI	CCATC	1 cut(s)	1197
BcgI	CGANNNNNNTGC	2 cut(s)	1100, 1134
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	5 cut(s)	29, 136, 531, 747, 860
BfaI	CTAG	3 cut(s)	204, 1191, 1247
BfmI	CTRYAG	2 cut(s)	108, 152
BfrI	CTTAAG	1 cut(s)	1291
BisI	GCNGC	7 cut(s)	114, 636, 936, 939, 987, 1008, 1066
BlpI	GCTNAGC	1 cut(s)	772
BlsI	GCNGC	7 cut(s)	115, 637, 937, 940, 988, 1009, 1067
BmcAI	AGTACT	1 cut(s)	876
Bme1390I	CCNGG	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	990
BmgT120I	GGNCC	1 cut(s)	1303
BmiI	GGNNCC	2 cut(s)	1131, 1330
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	4 cut(s)	51, 59, 722, 1440
BplI	GAGNNNNNCTC	2 cut(s)	1036, 1068
BpmI	CTGGAG	1 cut(s)	884
Bpu1102I	GCTNAGC	1 cut(s)	772
BpuMI	CCSGG	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	1029
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 419, 1075
Bse118I	RCCGGY	1 cut(s)	1102
Bse1I	ACTGG	2 cut(s)	244, 1259
Bse3DI	GCAATG	4 cut(s)	213, 351, 639, 902
BseDI	CCNNGG	1 cut(s)	1029
BseGI	GGATG	1 cut(s)	1208
BseLI	CCNNNNNNNGG	3 cut(s)	256, 419, 1075
BseMI	GCAATG	4 cut(s)	213, 351, 639, 902
BseMII	CTCAG	3 cut(s)	147, 542, 1161
BseNI	ACTGG	2 cut(s)	244, 1259
BseXI	GCAGC	6 cut(s)	100, 647, 922, 925, 994, 998
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	2 cut(s)	32, 707
Bsh1285I	CGRYCG	1 cut(s)	1107
BshFI	GGCC	4 cut(s)	423, 843, 1305, 1325
BshNI	GGYRCC	1 cut(s)	1129
BsiEI	CGRYCG	1 cut(s)	1107
BsiHKAI	GWGCWC	2 cut(s)	1049, 1275
BsiHKCI	CYCGRG	1 cut(s)	990
BsiSI	CCGG	4 cut(s)	476, 840, 1103, 1326
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	3 cut(s)	256, 419, 1075
BsmAI	GTCTC	5 cut(s)	29, 136, 531, 747, 860
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	945
BsnI	GGCC	4 cut(s)	423, 843, 1305, 1325
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	990
Bsp1286I	GDGCHC	2 cut(s)	1049, 1275
Bsp143I	GATC	3 cut(s)	187, 471, 1328
Bsp1720I	GCTNAGC	1 cut(s)	772
BspACI	CCGC	5 cut(s)	32, 128, 705, 1066, 1172
BspANI	GGCC	4 cut(s)	423, 843, 1305, 1325
BspCNI	CTCAG	3 cut(s)	146, 541, 1160
BspFNI	CGCG	2 cut(s)	32, 707
BspLI	GGNNCC	2 cut(s)	1131, 1330
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	3 cut(s)	466, 1323, 1336
BspQI	GCTCTTC	1 cut(s)	1353
BspT107I	GGYRCC	1 cut(s)	1129
BspTI	CTTAAG	1 cut(s)	1291
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	4 cut(s)	213, 351, 639, 902
BsrFI	RCCGGY	1 cut(s)	1102
BsrI	ACTGG	2 cut(s)	244, 1259
BssAI	RCCGGY	1 cut(s)	1102
BssECI	CCNNGG	1 cut(s)	1029
BssMI	GATC	3 cut(s)	187, 471, 1328
Bst4CI	ACNGT	3 cut(s)	40, 507, 762
Bst6I	CTCTTC	4 cut(s)	360, 750, 1061, 1353
BstAFI	CTTAAG	1 cut(s)	1291
BstAPI	GCANNNNNTGC	2 cut(s)	485, 641
BstC8I	GCNNGC	4 cut(s)	251, 294, 451, 943
BstDEI	CTNAG	5 cut(s)	133, 415, 528, 772, 1147
BstF5I	GGATG	1 cut(s)	1208
BstFNI	CGCG	2 cut(s)	32, 707
BstKTI	GATC	3 cut(s)	190, 474, 1331
BstMAI	GTCTC	5 cut(s)	29, 136, 531, 747, 860
BstMBI	GATC	3 cut(s)	187, 471, 1328
BstMCI	CGRYCG	1 cut(s)	1107
BstMWI	GCNNNNNNNGC	9 cut(s)	302, 485, 624, 641, 995, 1004, 1127, 1352, 1397
BstNSI	RCATGY	2 cut(s)	655, 1085
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	2 cut(s)	108, 152
BstUI	CGCG	2 cut(s)	32, 707
BstV1I	GCAGC	6 cut(s)	100, 647, 922, 925, 994, 998
BstV2I	GAAGAC	4 cut(s)	51, 59, 722, 1440
BstX2I	RGATCY	1 cut(s)	1328
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	1328
BsuRI	GGCC	4 cut(s)	423, 843, 1305, 1325
BtsCI	GGATG	1 cut(s)	1208
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	4 cut(s)	141, 237, 339, 1266
Cac8I	GCNNGC	4 cut(s)	251, 294, 451, 943
Cfr10I	RCCGGY	1 cut(s)	1102
Cfr13I	GGNCC	1 cut(s)	1303
Csp6I	GTAC	1 cut(s)	875
CviAII	CATG	9 cut(s)	57, 69, 166, 652, 816, 1012, 1070, 1082, 1126
CviQI	GTAC	1 cut(s)	875
DdeI	CTNAG	5 cut(s)	133, 415, 528, 772, 1147
DpnI	GATC	3 cut(s)	189, 473, 1330
DpnII	GATC	3 cut(s)	187, 471, 1328
EaeI	YGGCCR	1 cut(s)	1323
Eam1104I	CTCTTC	4 cut(s)	360, 750, 1061, 1353
EarI	CTCTTC	4 cut(s)	360, 750, 1061, 1353
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	113, 855
Eco88I	CYCGRG	1 cut(s)	990
EcoO109I	RGGNCCY	1 cut(s)	1303
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	9 cut(s)	60, 72, 169, 655, 819, 1015, 1073, 1085, 1129
FalI	AAGNNNNNCTT	4 cut(s)	602, 634, 1161, 1193
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	9 cut(s)	56, 68, 165, 651, 815, 1011, 1069, 1081, 1125
FauNDI	CATATG	2 cut(s)	884, 1222
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	7 cut(s)	114, 636, 936, 939, 987, 1008, 1066
FokI	GGATG	1 cut(s)	1215
Fsp4HI	GCNGC	7 cut(s)	114, 636, 936, 939, 987, 1008, 1066
FspBI	CTAG	3 cut(s)	204, 1191, 1247
GluI	GCNGC	7 cut(s)	114, 636, 936, 939, 987, 1008, 1066
GsuI	CTGGAG	1 cut(s)	884
HaeIII	GGCC	4 cut(s)	423, 843, 1305, 1325
HapII	CCGG	4 cut(s)	476, 840, 1103, 1326
Hin1II	CATG	9 cut(s)	60, 72, 169, 655, 819, 1015, 1073, 1085, 1129
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	3 cut(s)	740, 927, 1228
HpaI	GTTAAC	1 cut(s)	510
HpaII	CCGG	4 cut(s)	476, 840, 1103, 1326
HphI	GGTGA	5 cut(s)	76, 220, 904, 1018, 1363
Hpy166II	GTNNAC	2 cut(s)	510, 657
Hpy188I	TCNGA	5 cut(s)	531, 858, 932, 1277, 1432
Hpy188III	TCNNGA	3 cut(s)	185, 258, 388
Hpy8I	GTNNAC	2 cut(s)	510, 657
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	5 cut(s)	4, 91, 95, 792, 854
HpyCH4III	ACNGT	3 cut(s)	40, 507, 762
HpyF10VI	GCNNNNNNNGC	9 cut(s)	302, 485, 624, 641, 995, 1004, 1127, 1352, 1397
HpyF3I	CTNAG	5 cut(s)	133, 415, 528, 772, 1147
Hsp92II	CATG	9 cut(s)	60, 72, 169, 655, 819, 1015, 1073, 1085, 1129
Ksp22I	TGATCA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	510
Kzo9I	GATC	3 cut(s)	187, 471, 1328
LguI	GCTCTTC	1 cut(s)	1353
LmnI	GCTCC	5 cut(s)	121, 302, 555, 932, 968
Lsp1109I	GCAGC	6 cut(s)	100, 647, 922, 925, 994, 998
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	204, 1191, 1247
MaeIII	GTNAC	5 cut(s)	64, 235, 408, 1024, 1360
MalI	GATC	3 cut(s)	189, 473, 1330
MboI	GATC	3 cut(s)	187, 471, 1328
MfeI	CAATTG	1 cut(s)	1375
MflI	RGATCY	1 cut(s)	1328
MhlI	GDGCHC	2 cut(s)	1049, 1275
MluCI	AATT	8 cut(s)	404, 495, 537, 696, 962, 1317, 1375, 1447
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	1231
MseI	TTAA	4 cut(s)	509, 695, 804, 1292
MslI	CAYNNNNRTG	3 cut(s)	170, 344, 950
MspCI	CTTAAG	1 cut(s)	1291
MspI	CCGG	4 cut(s)	476, 840, 1103, 1326
MspR9I	CCNGG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	1375
Mva1269I	GAATGC	1 cut(s)	945
MvnI	CGCG	2 cut(s)	32, 707
MwoI	GCNNNNNNNGC	9 cut(s)	302, 485, 624, 641, 995, 1004, 1127, 1352, 1397
NciI	CCSGG	1 cut(s)	476
NdeI	CATATG	2 cut(s)	884, 1222
NdeII	GATC	3 cut(s)	187, 471, 1328
NlaIII	CATG	9 cut(s)	60, 72, 169, 655, 819, 1015, 1073, 1085, 1129
NlaIV	GGNNCC	2 cut(s)	1131, 1330
NmuCI	GTSAC	4 cut(s)	64, 235, 1024, 1360
NspI	RCATGY	2 cut(s)	655, 1085
PaeR7I	CTCGAG	1 cut(s)	990
PciSI	GCTCTTC	1 cut(s)	1353
PctI	GAATGC	1 cut(s)	945
PfeI	GAWTC	2 cut(s)	927, 1228
PflMI	CCANNNNNTGG	1 cut(s)	1075
PkrI	GCNGC	7 cut(s)	115, 637, 937, 940, 988, 1009, 1067
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	1131, 1330
PspPI	GGNCC	1 cut(s)	1303
PspXI	VCTCGAGB	1 cut(s)	990
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	1328
RsaI	GTAC	1 cut(s)	876
RsaNI	GTAC	1 cut(s)	875
RseI	CAYNNNNRTG	3 cut(s)	170, 344, 950
SapI	GCTCTTC	1 cut(s)	1353
SaqAI	TTAA	4 cut(s)	509, 695, 804, 1292
SatI	GCNGC	7 cut(s)	114, 636, 936, 939, 987, 1008, 1066
Sau3AI	GATC	3 cut(s)	187, 471, 1328
Sau96I	GGNCC	1 cut(s)	1303
ScaI	AGTACT	1 cut(s)	876
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	2 cut(s)	1049, 1275
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	2 cut(s)	108, 152
Sfr274I	CTCGAG	1 cut(s)	990
SlaI	CTCGAG	1 cut(s)	990
SmiMI	CAYNNNNRTG	3 cut(s)	170, 344, 950
SmlI	CTYRAG	2 cut(s)	990, 1291
SmoI	CTYRAG	2 cut(s)	990, 1291
Sse9I	AATT	8 cut(s)	404, 495, 537, 696, 962, 1317, 1375, 1447
SsiI	CCGC	5 cut(s)	32, 128, 705, 1066, 1172
SspMI	CTAG	3 cut(s)	204, 1191, 1247
StyD4I	CCNGG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	40, 507, 762
TaqI	TCGA	3 cut(s)	757, 991, 1110
TasI	AATT	8 cut(s)	404, 495, 537, 696, 962, 1317, 1375, 1447
TatI	WGTACW	1 cut(s)	874
TauI	GCSGC	1 cut(s)	1068
TfiI	GAWTC	2 cut(s)	927, 1228
Tru1I	TTAA	4 cut(s)	509, 695, 804, 1292
Tru9I	TTAA	4 cut(s)	509, 695, 804, 1292
TscAI	CASTG	4 cut(s)	141, 244, 346, 1266
TseFI	GTSAC	4 cut(s)	64, 235, 1024, 1360
TseI	GCWGC	6 cut(s)	113, 635, 935, 938, 986, 1007
Tsp45I	GTSAC	4 cut(s)	64, 235, 1024, 1360
TspDTI	ATGAA	1 cut(s)	975
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	4 cut(s)	141, 244, 346, 1266
Van91I	CCANNNNNTGG	1 cut(s)	1075
Vha464I	CTTAAG	1 cut(s)	1291
XceI	RCATGY	2 cut(s)	655, 1085
XhoI	CTCGAG	1 cut(s)	990
XspI	CTAG	3 cut(s)	204, 1191, 1247
ZrmI	AGTACT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.