pycom16g02920

cyclin-D1-binding protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002883
Physical Location & Seq
Forward (+)
1849411 .. 1850332
922 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02920.1

Sequence Viewer

Length: 309 bp
ATGGGCCGAGCCGAGAGAGACCAACTGACTCGAACTCTCAATCACCACCTCAACACCGTCCACGAGACCTTCCAGGTGTTGGATCAAACCGCACCTTCAACACTTGAGAAGGTGAGCTGGGTGGAGGTCACAAAGATGGGCGATCAAGTCTCCAAACAAGCTACCATTTTTGGAATGCTTTGGACCGGAGGAGAAACACCGCAAGTTAGATCGATCTACTTGAAGAAAACATGGTTTCCTACTTCAATACCCTGCAAGGTTTTCTTCTGCTTTCACATGGGAGTACAGTGGGTGCAGGGCCTACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCIP

Protein Analysis

103

Amino Acids

11.77

Weight (kDa)

9.14

Isoelectric Point (pI)

20.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 2 cut(s) 90, 200
AclWI GGATC 1 cut(s) 90
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 99, 223, 246
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 117, 161
AluI AGCT 2 cut(s) 117, 161
Alw26I GTCTC 3 cut(s) 12, 59, 154
AlwI GGATC 1 cut(s) 90
AoxI GGCC 2 cut(s) 4, 298
AspS9I GGNCC 3 cut(s) 4, 183, 298
AsuHPI GGTGA 2 cut(s) 35, 124
AvaII GGWCC 1 cut(s) 183
BauI CACGAG 1 cut(s) 62
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 3 cut(s) 12, 59, 154
BfaI CTAG 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 3 cut(s) 4, 183, 298
BmrFI CCNGG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 212
BsaI GGTCTC 2 cut(s) 12, 59
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 117
BshFI GGCC 2 cut(s) 6, 300
BshVI ATCGAT 1 cut(s) 212
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 3 cut(s) 12, 59, 154
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 2 cut(s) 6, 300
Bso31I GGTCTC 2 cut(s) 12, 59
Bsp143I GATC 4 cut(s) 82, 142, 209, 213
BspACI CCGC 2 cut(s) 90, 200
BspANI GGCC 2 cut(s) 6, 300
BspDI ATCGAT 1 cut(s) 212
BspPI GGATC 1 cut(s) 90
BspTNI GGTCTC 2 cut(s) 12, 59
BssMI GATC 4 cut(s) 82, 142, 209, 213
BssSI CACGAG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 58, 288
BstKTI GATC 4 cut(s) 85, 145, 212, 216
BstMAI GTCTC 3 cut(s) 12, 59, 154
BstMBI GATC 4 cut(s) 82, 142, 209, 213
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 212
BsuRI GGCC 2 cut(s) 6, 300
BsuTUI ATCGAT 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 4, 183, 298
ClaI ATCGAT 1 cut(s) 212
Csp6I GTAC 1 cut(s) 284
CviAII CATG 2 cut(s) 231, 277
CviJI RGCY 5 cut(s) 6, 11, 117, 161, 300
CviKI_1 RGCY 5 cut(s) 6, 11, 117, 161, 300
CviQI GTAC 1 cut(s) 284
DpnI GATC 4 cut(s) 84, 144, 211, 215
DpnII GATC 4 cut(s) 82, 142, 209, 213
Eco31I GGTCTC 2 cut(s) 12, 59
Eco47I GGWCC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 234, 280
FaiI YATR 2 cut(s) 232, 278
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 2 cut(s) 230, 276
FspBI CTAG 1 cut(s) 307
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 2 cut(s) 6, 300
HapII CCGG 1 cut(s) 186
Hin1II CATG 2 cut(s) 234, 280
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 35, 124
Hpy166II GTNNAC 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 79, 103, 105
HpyCH4III ACNGT 2 cut(s) 58, 288
HpyCH4V TGCA 2 cut(s) 255, 295
Hsp92II CATG 2 cut(s) 234, 280
Kzo9I GATC 4 cut(s) 82, 142, 209, 213
LpnPI CCDG 6 cut(s) 59, 86, 103, 199, 265, 281
MaeI CTAG 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 84, 144, 211, 215
MboI GATC 4 cut(s) 82, 142, 209, 213
MboII GAAGA 2 cut(s) 235, 256
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 3 cut(s) 59, 118, 182
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 74
NdeII GATC 4 cut(s) 82, 142, 209, 213
NlaIII CATG 2 cut(s) 234, 280
NmeAIII GCCGAG 2 cut(s) 32, 37
NmuCI GTSAC 1 cut(s) 127
PctI GAATGC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 79
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 3 cut(s) 4, 183, 298
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 134
Sau3AI GATC 4 cut(s) 82, 142, 209, 213
Sau96I GGNCC 3 cut(s) 4, 183, 298
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 74
SetI ASST 9 cut(s) 51, 71, 78, 97, 114, 119, 129, 163, 261
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SsiI CCGC 2 cut(s) 90, 200
SspMI CTAG 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 58, 288
TaqI TCGA 2 cut(s) 31, 212
TatI WGTACW 1 cut(s) 283
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 183
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.