Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

39297678 .. 39302077

Gene Structure 4400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38510

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGCAGCAGAAACTAGAAATGGGACAGATGGTTGATGAAAAGAAGAAATGGACGATTACATTTGCGAGAGAGTTGAAGAAGGAGGGTATAATAGCTGCACCAATGGTGGCAGTGACGGCACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCCCTCTCCAGTGTTGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTTTGTTAGGTACCTAGTCATTGAGGAGAAGAAGGCACTTCAGATTTCAATCTCAAAACCAATTGGTCTTGTTTACGTTTCATCAGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAGACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTTCTATGGATATTCATGGATAAATTGTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATCCCTGCACTATTTGGTGCATCAATTCTTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTTATTTTCCCAATGCTCCTATCCTCTTTTGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTCTTGTGTATAAGCTGGAATTTGGAAGTAGAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAATGTATTCCTCAGTCTTTGAGAAAACCCGTATTAGAATTTCAAAAGATTCTATCCTTCATGTTGGAGAGTTCTTTTGCTTGGCTATCCCGTCTGCTGTAATGGTTTGTCTAAAATGGTGGTCGTGCGAGCTGCTTATTTTTCTGTCCGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCCATATGGTATAATTCAATTTCAGTACCAGAAGAAATAAATTTGTTAGATATTGATATACTGAAACTCTCCTTTGTTCTTTGTGATTGTACAGCCTTACAATCTCTACTTTGCACTTCACTTTATCACATGGATTCGGATCTGCTGCAAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAGGCGATTATTGTAAGCACAACCCTCTTTTGCTGTCGCTATGTTTTGGGGAGTGCTTTCAGCAGTGAGACGCAGGTAGCGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGTTTACAAGCAGTACTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTGGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTACTCGGGTTTCCTGTGTACTTAAGGGGGAAAGGCCTTTGGATTGGAATAGTGGTCGGCTCTGTTGTGCAATCAACTCTTCTGGGTTGCATCACCTGTTTCACAAATTGGACTAAACAGGTTCATAACTCCTTTTTTTTTTCAACAAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

516

Amino Acids

56.71

Weight (kDa)

8.27

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	100 - 219	9.4e-18	MatE
MatE	PF01554	365 - 465	1.8e-15	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	320, 1219
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	246
AciI	CCGC	1 cut(s)	1235
AclWI	GGATC	3 cut(s)	485, 498, 1089
AcsI	RAATTY	4 cut(s)	680, 792, 982, 1545
AcuI	CTGAAG	4 cut(s)	260, 491, 694, 918
AfaI	GTAC	7 cut(s)	248, 403, 969, 1033, 1302, 1398, 1415
AfiI	CCNNNNNNNGG	2 cut(s)	351, 482
AflII	CTTAAG	1 cut(s)	1417
AgsI	TTSAA	6 cut(s)	76, 285, 525, 798, 960, 1539
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	8 cut(s)	95, 175, 676, 886, 1097, 1115, 1124, 1316
AluI	AGCT	8 cut(s)	95, 175, 676, 886, 1097, 1115, 1124, 1316
Alw26I	GTCTC	3 cut(s)	594, 923, 1217
AlwI	GGATC	3 cut(s)	485, 498, 1089
AlwNI	CAGNNNCTG	1 cut(s)	1154
Ama87I	CYCGRG	2 cut(s)	1116, 1400
AoxI	GGCC	3 cut(s)	484, 904, 1429
ApeKI	GCWGC	7 cut(s)	4, 95, 886, 1087, 1112, 1133, 1333
ApoI	RAATTY	4 cut(s)	680, 792, 982, 1545
Asp718I	GGTACC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	202, 1480
AvaI	CYCGRG	2 cut(s)	1116, 1400
BaeI	ACNNNNGTAYC	4 cut(s)	110, 143, 1388, 1421
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	664
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	7 cut(s)	16, 82, 873, 1074, 1120, 1124, 1345
BccI	CCATC	2 cut(s)	22, 1323
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	488
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	594, 923, 1217
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	5 cut(s)	14, 140, 251, 926, 1317
BfmI	CTRYAG	2 cut(s)	122, 1134
BfrI	CTTAAG	1 cut(s)	1417
BfuAI	ACCTGC	2 cut(s)	320, 1219
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	7 cut(s)	5, 96, 887, 1088, 1113, 1134, 1334
BlsI	GCNGC	7 cut(s)	6, 97, 888, 1089, 1114, 1135, 1335
BmcAI	AGTACT	1 cut(s)	1302
Bme1390I	CCNGG	1 cut(s)	488
BmeT110I	CYCGRG	2 cut(s)	1116, 1400
BmiI	GGNNCC	3 cut(s)	248, 492, 748
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	563, 1494
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	2 cut(s)	169, 420
Bsa29I	ATCGAT	1 cut(s)	146
BsaBI	GATNNNNATC	2 cut(s)	284, 1080
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 482
Bse1I	ACTGG	4 cut(s)	186, 226, 437, 586
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	2 cut(s)	284, 1080
BseBI	CCWGG	1 cut(s)	488
BseCI	ATCGAT	1 cut(s)	146
BseGI	GGATG	1 cut(s)	1334
BseJI	GATNNNNATC	2 cut(s)	284, 1080
BseLI	CCNNNNNNNGG	2 cut(s)	351, 482
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	6 cut(s)	605, 780, 1146, 1161, 1287, 1320
BseNI	ACTGG	4 cut(s)	186, 226, 437, 586
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	7 cut(s)	16, 82, 873, 1074, 1120, 1124, 1345
BseYI	CCCAGC	1 cut(s)	742
BsgI	GTGCAG	2 cut(s)	81, 525
BshFI	GGCC	3 cut(s)	486, 906, 1431
BshNI	GGYRCC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	146
BsiHKCI	CYCGRG	2 cut(s)	1116, 1400
BsiSI	CCGG	1 cut(s)	903
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	351, 482
BsmAI	GTCTC	3 cut(s)	594, 923, 1217
BsmBI	CGTCTC	1 cut(s)	1217
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	486, 906, 1431
BsoBI	CYCGRG	2 cut(s)	1116, 1400
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp1407I	TGTACA	1 cut(s)	1031
Bsp143I	GATC	3 cut(s)	169, 490, 1081
BspACI	CCGC	1 cut(s)	1235
BspANI	GGCC	3 cut(s)	486, 906, 1431
BspCNI	CTCAG	6 cut(s)	604, 779, 1147, 1160, 1286, 1319
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	248, 492, 748
BspMAI	CTGCAG	2 cut(s)	126, 1138
BspMI	ACCTGC	2 cut(s)	320, 1219
BspPI	GGATC	3 cut(s)	485, 498, 1089
BspT107I	GGYRCC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	1417
BsrDI	GCAATG	1 cut(s)	762
BsrGI	TGTACA	1 cut(s)	1031
BsrI	ACTGG	4 cut(s)	186, 226, 437, 586
BssMI	GATC	3 cut(s)	169, 490, 1081
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	570, 1289
Bst6I	CTCTTC	2 cut(s)	644, 1479
BstAFI	CTTAAG	1 cut(s)	1417
BstAUI	TGTACA	1 cut(s)	1031
BstC8I	GCNNGC	3 cut(s)	357, 514, 884
BstDEI	CTNAG	6 cut(s)	591, 766, 1147, 1155, 1273, 1306
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	1334
BstKTI	GATC	3 cut(s)	172, 493, 1084
BstMAI	GTCTC	3 cut(s)	594, 923, 1217
BstMBI	GATC	3 cut(s)	169, 490, 1081
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 365, 659, 1121, 1130
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	2 cut(s)	122, 1134
BstV1I	GCAGC	7 cut(s)	16, 82, 873, 1074, 1120, 1124, 1345
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	2 cut(s)	490, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	2 cut(s)	490, 1081
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	486, 906, 1431
BsuTUI	ATCGAT	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	1334
BtsI	GCAGTG	4 cut(s)	117, 119, 1143, 1225
BtsIMutI	CAGTG	7 cut(s)	117, 119, 193, 219, 1143, 1152, 1225
BveI	ACCTGC	2 cut(s)	320, 1219
Cac8I	GCNNGC	3 cut(s)	357, 514, 884
CaiI	CAGNNNCTG	1 cut(s)	1154
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	1234
Csp6I	GTAC	7 cut(s)	247, 402, 968, 1032, 1301, 1397, 1414
CviAII	CATG	4 cut(s)	460, 657, 815, 1072
CviQI	GTAC	7 cut(s)	247, 402, 968, 1032, 1301, 1397, 1414
DdeI	CTNAG	6 cut(s)	591, 766, 1147, 1155, 1273, 1306
DpnI	GATC	3 cut(s)	171, 492, 1083
DpnII	GATC	3 cut(s)	169, 490, 1081
Eam1104I	CTCTTC	2 cut(s)	644, 1479
EarI	CTCTTC	2 cut(s)	644, 1479
Eco147I	AGGCCT	1 cut(s)	1431
Eco24I	GRGCYC	1 cut(s)	664
Eco32I	GATATC	2 cut(s)	414, 501
Eco57I	CTGAAG	4 cut(s)	260, 491, 694, 918
Eco88I	CYCGRG	2 cut(s)	1116, 1400
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	486
EcoRV	GATATC	2 cut(s)	414, 501
EcoT38I	GRGCYC	1 cut(s)	664
Esp3I	CGTCTC	1 cut(s)	1217
FaeI	CATG	4 cut(s)	463, 660, 818, 1075
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	4 cut(s)	459, 656, 814, 1071
FauNDI	CATATG	1 cut(s)	947
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	7 cut(s)	5, 96, 887, 1088, 1113, 1134, 1334
FokI	GGATG	1 cut(s)	1341
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	7 cut(s)	5, 96, 887, 1088, 1113, 1134, 1334
FspBI	CTAG	5 cut(s)	14, 140, 251, 926, 1317
GluI	GCNGC	7 cut(s)	5, 96, 887, 1088, 1113, 1134, 1334
GsaI	CCCAGC	1 cut(s)	746
GsuI	CTGGAG	2 cut(s)	169, 420
HaeIII	GGCC	3 cut(s)	486, 906, 1431
HapII	CCGG	1 cut(s)	903
HgaI	GACGC	1 cut(s)	1234
Hin1II	CATG	4 cut(s)	463, 660, 818, 1075
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	3 cut(s)	595, 803, 1076
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	1 cut(s)	903
HphI	GGTGA	2 cut(s)	202, 1480
Hpy166II	GTNNAC	4 cut(s)	310, 573, 1292, 1414
Hpy188I	TCNGA	5 cut(s)	161, 279, 594, 1081, 1263
Hpy188III	TCNNGA	2 cut(s)	167, 321
Hpy8I	GTNNAC	4 cut(s)	310, 573, 1292, 1414
HpyAV	CCTTC	7 cut(s)	73, 242, 262, 515, 718, 821, 917
HpyCH4III	ACNGT	2 cut(s)	570, 1289
HpyCH4IV	ACGT	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 365, 659, 1121, 1130
HpyF3I	CTNAG	6 cut(s)	591, 766, 1147, 1155, 1273, 1306
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	463, 660, 818, 1075
KpnI	GGTACC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	169, 490, 1081
LmnI	GCTCC	3 cut(s)	365, 618, 1094
Lsp1109I	GCAGC	7 cut(s)	16, 82, 873, 1074, 1120, 1124, 1345
LweI	GCATC	2 cut(s)	563, 1494
MaeI	CTAG	5 cut(s)	14, 140, 251, 926, 1317
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	4 cut(s)	112, 217, 471, 1150
MalI	GATC	3 cut(s)	171, 492, 1083
MboI	GATC	3 cut(s)	169, 490, 1081
MboII	GAAGA	9 cut(s)	55, 88, 122, 277, 437, 626, 631, 986, 1466
MfeI	CAATTG	2 cut(s)	195, 297
MflI	RGATCY	2 cut(s)	490, 1081
MhlI	GDGCHC	1 cut(s)	664
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	3 cut(s)	139, 799, 1357
MseI	TTAA	4 cut(s)	564, 572, 1418, 1549
MspCI	CTTAAG	1 cut(s)	1417
MspI	CCGG	1 cut(s)	903
MspR9I	CCNGG	1 cut(s)	488
MunI	CAATTG	2 cut(s)	195, 297
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	5 cut(s)	116, 365, 659, 1121, 1130
NdeI	CATATG	1 cut(s)	947
NdeII	GATC	3 cut(s)	169, 490, 1081
NlaIII	CATG	4 cut(s)	463, 660, 818, 1075
NlaIV	GGNNCC	3 cut(s)	248, 492, 748
NmuCI	GTSAC	3 cut(s)	112, 217, 1150
PaeR7I	CTCGAG	1 cut(s)	1116
PaqCI	CACCTGC	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	1431
PfeI	GAWTC	2 cut(s)	803, 1076
PkrI	GCNGC	7 cut(s)	6, 97, 888, 1089, 1114, 1135, 1335
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	3 cut(s)	248, 492, 748
PspXI	VCTCGAGB	1 cut(s)	1116
PstI	CTGCAG	2 cut(s)	126, 1138
PstNI	CAGNNNCTG	1 cut(s)	1154
PsuI	RGATCY	2 cut(s)	490, 1081
RsaI	GTAC	7 cut(s)	248, 403, 969, 1033, 1302, 1398, 1415
RsaNI	GTAC	7 cut(s)	247, 402, 968, 1032, 1301, 1397, 1414
SaqAI	TTAA	4 cut(s)	564, 572, 1418, 1549
SatI	GCNGC	7 cut(s)	5, 96, 887, 1088, 1113, 1134, 1334
Sau3AI	GATC	3 cut(s)	169, 490, 1081
ScaI	AGTACT	1 cut(s)	1302
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	563, 1494
SfcI	CTRYAG	2 cut(s)	122, 1134
Sfr274I	CTCGAG	1 cut(s)	1116
SlaI	CTCGAG	1 cut(s)	1116
SmlI	CTYRAG	2 cut(s)	1116, 1417
SmoI	CTYRAG	2 cut(s)	1116, 1417
SpeI	ACTAGT	1 cut(s)	139
SseBI	AGGCCT	1 cut(s)	1431
SsiI	CCGC	1 cut(s)	1235
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	5 cut(s)	14, 140, 251, 926, 1317
StuI	AGGCCT	1 cut(s)	1431
StyD4I	CCNGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	570, 1289
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	146, 1117
TatI	WGTACW	4 cut(s)	401, 1031, 1300, 1413
TfiI	GAWTC	2 cut(s)	803, 1076
Tru1I	TTAA	4 cut(s)	564, 572, 1418, 1549
Tru9I	TTAA	4 cut(s)	564, 572, 1418, 1549
TscAI	CASTG	7 cut(s)	117, 126, 193, 226, 1143, 1159, 1225
TseFI	GTSAC	3 cut(s)	112, 217, 1150
TseI	GCWGC	7 cut(s)	4, 95, 886, 1087, 1112, 1133, 1333
Tsp45I	GTSAC	3 cut(s)	112, 217, 1150
TspDTI	ATGAA	5 cut(s)	51, 306, 448, 803, 1508
TspRI	CASTG	7 cut(s)	117, 126, 193, 226, 1143, 1159, 1225
Vha464I	CTTAAG	1 cut(s)	1417
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	4 cut(s)	680, 792, 982, 1545
XhoI	CTCGAG	1 cut(s)	1116
XspI	CTAG	5 cut(s)	14, 140, 251, 926, 1317
ZrmI	AGTACT	1 cut(s)	1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.