Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

162582 .. 165780

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgcagcagaaactagaaatgggacagatggttgatgaaaagaagaaatggacgattacatttgcgagagagttgaagaaggagggtataatagctgcaccaatggtggcagtgacggcactgcagtatcttctgcaactagtatcgatgattatggtcggacatcttgatcagctctccctctccagtgttgcaattgccatttctctcaccaatgtcactggtttcagccttctttcaggattggcaggtggattggaaaccttatgtgggcaagcatttggagcagagcaataccaaagacttggaacttatacttgtactgctatgatatcacttctcttggtttgtcctccagtatgtcttctatggatattcatggataaattgttacctttagtaggccaggatccattgatatcccttcaggcacgcaaatattcaatgtggcttatccctgcattatttggtgcatcaattctcaaaccgttaactcgctacttccagtctcagagtcttattttcgcaatgctcctatcctcttttgccattcttctcttccatatatctgcctcatgggctcttgtgtataagctggaatttggaagtaaaggttcagcaatagccttcagtttatccacttggttatatgtggtaatgctgggttcctatgcaatgtattcctcagtctttgagaaaacccgtattagaatttcaaaagattctatcctgcatgttggagagttcttttgcttggctatcccgtctgctgtaatggtttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

261

Amino Acids

28.89

Weight (kDa)

8.93

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	239
AclWI	GGATC	2 cut(s)	404, 417
AcsI	RAATTY	2 cut(s)	599, 711
AcuI	CTGAAG	2 cut(s)	410, 613
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	270, 401
AgsI	TTSAA	3 cut(s)	76, 444, 717
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	3 cut(s)	95, 175, 595
AluI	AGCT	3 cut(s)	95, 175, 595
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	404, 417
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	4, 95
ApoI	RAATTY	2 cut(s)	599, 711
AsuHPI	GGTGA	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	16, 82
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	513
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	2 cut(s)	14, 140
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	578
BisI	GCNGC	2 cut(s)	5, 96
BlsI	GCNGC	2 cut(s)	6, 97
Bme1390I	CCNGG	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	411, 667
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	2 cut(s)	169, 339
Bsa29I	ATCGAT	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 401
Bse1I	ACTGG	4 cut(s)	186, 226, 356, 505
Bse3DI	GCAATG	2 cut(s)	534, 681
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	270, 401
BseMI	GCAATG	2 cut(s)	534, 681
BseMII	CTCAG	2 cut(s)	524, 699
BseNI	ACTGG	4 cut(s)	186, 226, 356, 505
BseXI	GCAGC	2 cut(s)	16, 82
BseYI	CCCAGC	1 cut(s)	661
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	270, 401
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	169, 409
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	523, 698
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	411, 667
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	404, 417
BsrDI	GCAATG	2 cut(s)	534, 681
BsrI	ACTGG	4 cut(s)	186, 226, 356, 505
BssMI	GATC	2 cut(s)	169, 409
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	276, 433
BstDEI	CTNAG	2 cut(s)	510, 685
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstKTI	GATC	2 cut(s)	172, 412
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	2 cut(s)	169, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 284, 578
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	16, 82
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	405
BsuTUI	ATCGAT	1 cut(s)	146
BtsI	GCAGTG	2 cut(s)	117, 119
BtsIMutI	CAGTG	4 cut(s)	117, 119, 193, 219
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	276, 433
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	3 cut(s)	379, 576, 734
CviJI	RGCY	9 cut(s)	95, 175, 231, 405, 451, 581, 595, 626, 758
CviKI_1	RGCY	9 cut(s)	95, 175, 231, 405, 451, 581, 595, 626, 758
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	2 cut(s)	510, 685
DpnI	GATC	2 cut(s)	171, 411
DpnII	GATC	2 cut(s)	169, 409
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	583
Eco32I	GATATC	2 cut(s)	333, 420
Eco57I	CTGAAG	2 cut(s)	410, 613
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	2 cut(s)	333, 420
EcoT38I	GRGCYC	1 cut(s)	583
FaeI	CATG	3 cut(s)	382, 579, 737
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	3 cut(s)	378, 575, 733
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	5, 96
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	2 cut(s)	5, 96
FspBI	CTAG	2 cut(s)	14, 140
GluI	GCNGC	2 cut(s)	5, 96
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	2 cut(s)	169, 339
HaeIII	GGCC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	382, 579, 737
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	2 cut(s)	514, 722
HpaI	GTTAAC	1 cut(s)	492
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	161, 513
Hpy188III	TCNNGA	2 cut(s)	167, 240
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	4 cut(s)	73, 242, 434, 637
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4V	TGCA	9 cut(s)	4, 98, 124, 136, 194, 461, 473, 674, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 284, 578
HpyF3I	CTNAG	2 cut(s)	510, 685
Hsp92II	CATG	3 cut(s)	382, 579, 737
Ksp22I	TGATCA	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	169, 409
LmnI	GCTCC	2 cut(s)	284, 537
Lsp1109I	GCAGC	2 cut(s)	16, 82
LweI	GCATC	1 cut(s)	482
MaeI	CTAG	2 cut(s)	14, 140
MaeIII	GTNAC	3 cut(s)	112, 217, 390
MalI	GATC	2 cut(s)	171, 411
MboI	GATC	2 cut(s)	169, 409
MboII	GAAGA	6 cut(s)	55, 88, 122, 356, 545, 550
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	5 cut(s)	195, 386, 477, 599, 711
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	2 cut(s)	139, 718
MnlI	CCTC	6 cut(s)	76, 191, 363, 550, 583, 694
MseI	TTAA	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	116, 284, 578
NdeII	GATC	2 cut(s)	169, 409
NlaIII	CATG	3 cut(s)	382, 579, 737
NlaIV	GGNNCC	2 cut(s)	411, 667
NmuCI	GTSAC	2 cut(s)	112, 217
NspI	RCATGY	1 cut(s)	737
PaqCI	CACCTGC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	2 cut(s)	6, 97
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	411, 667
PstI	CTGCAG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	2 cut(s)	5, 96
Sau3AI	GATC	2 cut(s)	169, 409
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	7 cut(s)	97, 177, 253, 266, 397, 597, 616
SfaNI	GCATC	1 cut(s)	482
SfcI	CTRYAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	5 cut(s)	195, 386, 477, 599, 711
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	2 cut(s)	14, 140
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	489
TaqI	TCGA	1 cut(s)	146
TasI	AATT	5 cut(s)	195, 386, 477, 599, 711
TatI	WGTACW	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	4 cut(s)	117, 126, 193, 226
TseFI	GTSAC	2 cut(s)	112, 217
TseI	GCWGC	2 cut(s)	4, 95
Tsp45I	GTSAC	2 cut(s)	112, 217
TspDTI	ATGAA	2 cut(s)	51, 367
TspRI	CASTG	4 cut(s)	117, 126, 193, 226
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	2 cut(s)	599, 711
XceI	RCATGY	1 cut(s)	737
XspI	CTAG	2 cut(s)	14, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.