Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Reverse (-)

21673585 .. 21675851

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGGGCAATATGAAAAACTAGGGACATACACTTGTACTGCTATGATCTCCCTTCTCTTGGTTTGTCCACCAGTATGTCTCCTATGGATATTCATGGATAAATTGTTACCTTTAGTAGGTCAAGATCCCTTGATATCCCTTAAGGCACGCAAATATGCAATGTGGCTTATTCCTGCACTATTTGGTGCTGCAATTCTTAAACCGTTAACTCGCTACTTCCAGTCTCAGAGTCTCATTTTCCCTATGCTGCTATCCTCTTTCGCCATTCTTCTCTTCCATATATCCGCATCATGGGCTCTTGTGTATAAGTTGGGAATTGGAAGTAACGGTTCAGCGATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGTGTTCCTATGCCTTGTATTCCTCTGCCTTCAAGAAAACCCGTATCACAATTTCAGAAGATTCTGTTCTTCATGTTGGAGAGTTCTTTCACCTGGCGATTTCATCTGCTGTAATGGTTTGTTTGAAATGGTGGTCTTGCGAGCTGCTTATTTTGCTGTCCGGGCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCTATATGCCTTACAATATCTACCTTACACTTCACTGTATCATACGGATTTGGAGCTGCTGCAAGTACTCGGGTATCAAACGAATTAGGAGCTGGTAATCCACAAGCAGCGCGAGTAGCTGTTCAGGCTGCAATGTTTCTCTCGGTCACTGAGGCGCTTATTGTGATCACAACTCTCTTTTGCTGTCGATATTTTCTGGGACGTGCTTTCAGTAGCGAGAAGCAGGTAGTGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGATAGCATACAAGCAGTACTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTAGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTGCTTGGGTTTCCTCTGCACTTAAGGGGGAAAGGCCTCTGGATTGGAATAGTGGCTGGCTCTGCTGTGCAATCAACTCTTTTCGGTTGCATCACTTATCTCTCAAATTGGACTAAACAGGCAAAGTTGGCAAGAGAGAGGATATTTGCAGATTCATCATCAACAGACATGGAAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

397

Amino Acids

42.91

Weight (kDa)

8.86

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	2 - 111	3e-16	MatE
MatE	PF01554	175 - 336	1e-27	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
AccII	CGCG	1 cut(s)	730
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	370, 594
AfaI	GTAC	3 cut(s)	79, 685, 915
AfiI	CCNNNNNNNGG	4 cut(s)	27, 100, 158, 333
AflII	CTTAAG	2 cut(s)	182, 1030
AgsI	TTSAA	2 cut(s)	451, 544
AjiI	CACGTC	1 cut(s)	821
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	5 cut(s)	562, 674, 710, 737, 929
AluI	AGCT	5 cut(s)	562, 674, 710, 737, 929
Alw26I	GTCTC	4 cut(s)	125, 270, 278, 599
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	1 cut(s)	1042
ApeKI	GCWGC	8 cut(s)	230, 289, 562, 674, 677, 725, 746, 946
AspLEI	GCGC	2 cut(s)	730, 775
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	687
BaeI	ACNNNNGTAYC	2 cut(s)	675, 708
BanII	GRGCYC	1 cut(s)	340
BbvI	GCAGC	8 cut(s)	217, 276, 549, 661, 664, 733, 737, 958
BccI	CCATC	1 cut(s)	936
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	4 cut(s)	125, 270, 278, 599
BfaI	CTAG	3 cut(s)	62, 602, 930
BfoI	RGCGCY	1 cut(s)	776
BfrI	CTTAAG	2 cut(s)	182, 1030
BfuAI	ACCTGC	1 cut(s)	832
BisI	GCNGC	8 cut(s)	231, 290, 563, 675, 678, 726, 747, 947
BlsI	GCNGC	8 cut(s)	232, 291, 564, 676, 679, 727, 748, 948
BmcAI	AGTACT	2 cut(s)	685, 915
Bme1390I	CCNGG	2 cut(s)	512, 580
BmeT110I	CYCGRG	1 cut(s)	687
BmgBI	CACGTC	1 cut(s)	821
BmrFI	CCNGG	2 cut(s)	512, 580
BmsI	GCATC	2 cut(s)	338, 1107
BpuMI	CCSGG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 100, 158, 333
Bse1I	ACTGG	2 cut(s)	113, 262
Bse3DI	GCAATG	2 cut(s)	207, 756
BseBI	CCWGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	947
BseLI	CCNNNNNNNGG	4 cut(s)	27, 100, 158, 333
BseMI	GCAATG	2 cut(s)	207, 756
BseMII	CTCAG	4 cut(s)	281, 759, 900, 933
BseNI	ACTGG	2 cut(s)	113, 262
BseXI	GCAGC	8 cut(s)	217, 276, 549, 661, 664, 733, 737, 958
BsgI	GTGCAG	2 cut(s)	201, 1010
Bsh1236I	CGCG	1 cut(s)	730
BshFI	GGCC	1 cut(s)	1044
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	2 cut(s)	79, 831
BslI	CCNNNNNNNGG	4 cut(s)	27, 100, 158, 333
BsmAI	GTCTC	4 cut(s)	125, 270, 278, 599
BsmFI	GGGAC	2 cut(s)	79, 831
BsnI	GGCC	1 cut(s)	1044
BsoBI	CYCGRG	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	87, 166, 783
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	1044
BspCNI	CTCAG	4 cut(s)	280, 760, 899, 932
BspFNI	CGCG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	1 cut(s)	161
BspTI	CTTAAG	2 cut(s)	182, 1030
BsrDI	GCAATG	2 cut(s)	207, 756
BsrI	ACTGG	2 cut(s)	113, 262
BssMI	GATC	3 cut(s)	87, 166, 783
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	246, 371, 655
Bst6I	CTCTTC	1 cut(s)	320
BstAFI	CTTAAG	2 cut(s)	182, 1030
BstC8I	GCNNGC	4 cut(s)	33, 190, 560, 1066
BstDEI	CTNAG	4 cut(s)	267, 768, 886, 919
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	947
BstFNI	CGCG	1 cut(s)	730
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	2 cut(s)	730, 775
BstKTI	GATC	3 cut(s)	90, 169, 786
BstMAI	GTCTC	4 cut(s)	125, 270, 278, 599
BstMBI	GATC	3 cut(s)	87, 166, 783
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 335, 571, 580, 734, 743, 1070, 1136
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	2 cut(s)	510, 578
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	8 cut(s)	217, 276, 549, 661, 664, 733, 737, 958
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	1044
BtrI	CACGTC	1 cut(s)	821
BtsCI	GGATG	1 cut(s)	947
BtsIMutI	CAGTG	2 cut(s)	651, 765
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	4 cut(s)	33, 190, 560, 1066
CfoI	GCGC	2 cut(s)	730, 775
Csp6I	GTAC	3 cut(s)	78, 684, 914
CviAII	CATG	4 cut(s)	136, 333, 491, 1177
CviQI	GTAC	3 cut(s)	78, 684, 914
DdeI	CTNAG	4 cut(s)	267, 768, 886, 919
DpnI	GATC	3 cut(s)	89, 168, 785
DpnII	GATC	3 cut(s)	87, 166, 783
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	1044
Eco24I	GRGCYC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	370, 594
Eco88I	CYCGRG	1 cut(s)	687
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	4 cut(s)	139, 336, 494, 1180
FaqI	GGGAC	2 cut(s)	79, 831
FatI	CATG	4 cut(s)	135, 332, 490, 1176
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	8 cut(s)	231, 290, 563, 675, 678, 726, 747, 947
FokI	GGATG	1 cut(s)	954
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	8 cut(s)	231, 290, 563, 675, 678, 726, 747, 947
FspBI	CTAG	3 cut(s)	62, 602, 930
GlaI	GCGC	2 cut(s)	729, 774
GluI	GCNGC	8 cut(s)	231, 290, 563, 675, 678, 726, 747, 947
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	1044
HapII	CCGG	1 cut(s)	579
HhaI	GCGC	2 cut(s)	730, 775
Hin1II	CATG	4 cut(s)	139, 336, 494, 1180
Hin6I	GCGC	2 cut(s)	728, 773
HinP1I	GCGC	2 cut(s)	728, 773
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	271, 479, 1160
HpaI	GTTAAC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	110, 249, 850
Hpy188I	TCNGA	3 cut(s)	270, 475, 876
Hpy188III	TCNNGA	3 cut(s)	164, 451, 1048
Hpy8I	GTNNAC	3 cut(s)	110, 249, 850
HpyAV	CCTTC	3 cut(s)	104, 394, 457
HpyCH4III	ACNGT	3 cut(s)	246, 371, 655
HpyCH4IV	ACGT	1 cut(s)	820
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 335, 571, 580, 734, 743, 1070, 1136
HpyF3I	CTNAG	4 cut(s)	267, 768, 886, 919
HpySE526I	ACGT	1 cut(s)	820
Hsp92II	CATG	4 cut(s)	139, 336, 494, 1180
HspAI	GCGC	2 cut(s)	728, 773
Ksp22I	TGATCA	1 cut(s)	783
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	87, 166, 783
LmnI	GCTCC	3 cut(s)	41, 671, 707
Lsp1109I	GCAGC	8 cut(s)	217, 276, 549, 661, 664, 733, 737, 958
LweI	GCATC	2 cut(s)	338, 1107
MaeI	CTAG	3 cut(s)	62, 602, 930
MaeII	ACGT	1 cut(s)	820
MaeIII	GTNAC	3 cut(s)	147, 365, 763
MalI	GATC	3 cut(s)	89, 168, 785
MboI	GATC	3 cut(s)	87, 166, 783
MboII	GAAGA	4 cut(s)	302, 307, 479, 488
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	6 cut(s)	143, 234, 357, 468, 701, 1114
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	2 cut(s)	475, 970
MnlI	CCTC	9 cut(s)	307, 451, 763, 882, 893, 926, 1032, 1055, 1140
MseI	TTAA	4 cut(s)	183, 240, 248, 1031
MslI	CAYNNNNRTG	1 cut(s)	115
MspCI	CTTAAG	2 cut(s)	182, 1030
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	512, 580
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	8 cut(s)	41, 335, 571, 580, 734, 743, 1070, 1136
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	3 cut(s)	87, 166, 783
NlaIII	CATG	4 cut(s)	139, 336, 494, 1180
NmuCI	GTSAC	1 cut(s)	763
PceI	AGGCCT	1 cut(s)	1044
PfeI	GAWTC	2 cut(s)	479, 1160
PkrI	GCNGC	8 cut(s)	232, 291, 564, 676, 679, 727, 748, 948
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	3 cut(s)	79, 685, 915
RsaNI	GTAC	3 cut(s)	78, 684, 914
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	4 cut(s)	183, 240, 248, 1031
SatI	GCNGC	8 cut(s)	231, 290, 563, 675, 678, 726, 747, 947
Sau3AI	GATC	3 cut(s)	87, 166, 783
ScaI	AGTACT	2 cut(s)	685, 915
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	512, 580
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	338, 1107
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	182, 1030
SmoI	CTYRAG	2 cut(s)	182, 1030
Sse9I	AATT	6 cut(s)	143, 234, 357, 468, 701, 1114
SseBI	AGGCCT	1 cut(s)	1044
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	3 cut(s)	62, 602, 930
StuI	AGGCCT	1 cut(s)	1044
StyD4I	CCNGG	2 cut(s)	510, 578
TaaI	ACNGT	3 cut(s)	246, 371, 655
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	1 cut(s)	805
TaqII	GACCGA	1 cut(s)	751
TasI	AATT	6 cut(s)	143, 234, 357, 468, 701, 1114
TatI	WGTACW	3 cut(s)	77, 683, 913
TfiI	GAWTC	2 cut(s)	479, 1160
Tru1I	TTAA	4 cut(s)	183, 240, 248, 1031
Tru9I	TTAA	4 cut(s)	183, 240, 248, 1031
TscAI	CASTG	2 cut(s)	658, 772
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	8 cut(s)	230, 289, 562, 674, 677, 725, 746, 946
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	5 cut(s)	69, 124, 479, 510, 1152
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	658, 772
Vha464I	CTTAAG	2 cut(s)	182, 1030
XagI	CCTNNNNNAGG	1 cut(s)	156
XspI	CTAG	3 cut(s)	62, 602, 930
ZrmI	AGTACT	2 cut(s)	685, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.