Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002883

Physical Location & Seq

Genomic Coordinates Forward (+)

37041315 .. 37045282

Gene Structure 3968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGCAGCAGAAACTAGAAATGGGACAGATGGTTGATGAAGATAAGAAATGGACGATTACATTTGCGAGAGAGTTGAAGAAGGAGGGTATTATAGCTGCACCAATGGTTGCAGTGACGGTACTGCAGTATCTTCTGCAACTAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCGCTATCCAGTGTAGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTCTGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAAACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTCCTATGGATATTCATGGATAAATTTTTACCTTTAGTAGGCCAGGATCCATTGATATCCCTTCAGGCACGCAAATATTCAATGTGGCTTATTCCTGCACTATTTGAGTCTCATTTTCCCAATGCTCTATCCTCTCTCGCCATTCTTCTCTTCCATATATCTGCCTCATGGGCTTTTGTGTATAAGCTGGGATTTGGAAGTAAAGGTTCAGCAATAGCCTTCAGTTTATCCACTTGGTTATATGTGGTAATGCTGGGTTCCTATGCAATGTATTCCTCAGTCTTCGAGAAAACCCGTATTACAATTTCAAAAGATTCTATTCTTCATGTTGGAGAGTTCTTTCGCTTGGCTATCCCGTCTGCTGTAATGGTTTGTCTGAAATGGTGGTCGTGCGAGCTACTTATTTTGCTTTCCGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCCATATGCCTTGCAATCTCTACTTTGCACTTCACTTTATCATATGGATTTGGAGCTGCTGCAAGTACTCGGGTAGCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAAGCGCTTATTGTAAGCACTACTCTCTTTTGCGGTCGTTCTGTTTTGGGACGTGCTTTCAGCAGTGAGAAGCAGGTAGTGGACTATGTTGCAGTTATGGCACCTCTGATTTGCCTCTCAGTTTTTATGGACAGCTTACAAGCAGTACTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTGGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTACTCGGGTTTCCTGTGCACTTAAGGGGGAAAGGCCTTTGGATTGGAATAGTGGTCGGCTCGGTTGTGCAATCAACTCTTCTGGGTTGCATCACCTATTTCACAAATTGGACTAAACAGACTCCAGGACTGAGATCCGATCATTCTCCAATTCATGCTCCAAAGGAGCATCAGCCACAACAATATCCACTGCAGGTACAGAACCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

471

Amino Acids

51.12

Weight (kDa)

8.6

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	34 - 165	6.2e-24	MatE
MatE	PF01554	240 - 402	1.6e-27	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64820 AT1G66780 AT1G71140
fragaria_vesca	FvH4_5g30800
malus_domestica	MD07G1250100.v1.1 MD09G1258000.v1.1 MD13G1032300.v1.1 MD16G1034500.v1.1
prunus_persica	Prupe.3G149900_v2.0.a1
pyrus_communis	pycom13g02800 pycom16g02920
rosa_chinensis	RchiOBHm_Chr4g0414751 RchiOBHm_Chr4g0414771 RchiOBHm_Chr4g0414801
rosa_laevigata	RLG00000008113 RLG00000008116 RLG00000008118
rosa_multiflora	Rmu_sc0001192.1_g000035 Rmu_sc0003872.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358570 Rroxscaffold_5G00358590 Rroxscaffold_5G00358600
rosa_rugosa	Rorug03G0291100 Rorug03G0335300 Rorug04G0130500 Rorug05G0505700.1
rosa_samantha	Rh4AG188700 Rh4AG188800 Rh4AG189400 Rh4BG187900 Rh4CG201300 Rh4CG201400 Rh4DG187400 Rh4DG187600 Rh4DG188000
rosa_wichuraiana	Rw4G016100 Rw4G016110 Rw4G016150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	3 cut(s)	239, 1030, 1390
AccB1I	GGYRCC	1 cut(s)	1066
AciI	CCGC	1 cut(s)	999
AclWI	GGATC	3 cut(s)	404, 417, 1335
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	4 cut(s)	410, 568, 792, 987
AfaI	GTAC	6 cut(s)	120, 322, 883, 1113, 1209, 1404
AfeI	AGCGCT	1 cut(s)	972
AfiI	CCNNNNNNNGG	2 cut(s)	270, 401
AflII	CTTAAG	1 cut(s)	1228
AgsI	TTSAA	3 cut(s)	76, 444, 672
AhlI	ACTAGT	1 cut(s)	139
AjiI	CACGTC	1 cut(s)	1019
AjnI	CCWGG	2 cut(s)	405, 1330
Alw21I	GWGCWC	1 cut(s)	1227
Alw26I	GTCTC	3 cut(s)	368, 477, 797
Alw44I	GTGCAC	1 cut(s)	1223
AlwI	GGATC	3 cut(s)	404, 417, 1335
AlwNI	CAGNNNCTG	1 cut(s)	965
Ama87I	CYCGRG	3 cut(s)	885, 927, 1211
Aor51HI	AGCGCT	1 cut(s)	972
AoxI	GGCC	3 cut(s)	403, 778, 1240
ApaLI	GTGCAC	1 cut(s)	1223
ApeKI	GCWGC	7 cut(s)	4, 95, 872, 875, 923, 944, 1144
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	973
AsuHPI	GGTGA	2 cut(s)	202, 1291
AvaI	CYCGRG	3 cut(s)	885, 927, 1211
BaeGI	GKGCMC	1 cut(s)	1227
BaeI	ACNNNNGTAYC	6 cut(s)	110, 110, 143, 143, 1199, 1232
BamHI	GGATCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	1066
BbsI	GAAGAC	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	1227
BbvI	GCAGC	7 cut(s)	16, 82, 859, 862, 931, 935, 1156
BccI	CCATC	2 cut(s)	22, 1134
BciT130I	CCWGG	2 cut(s)	407, 1332
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	368, 477, 797
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	4 cut(s)	14, 140, 800, 1128
BfmI	CTRYAG	3 cut(s)	122, 945, 1397
BfoI	RGCGCY	1 cut(s)	974
BfrI	CTTAAG	1 cut(s)	1228
BfuAI	ACCTGC	3 cut(s)	239, 1030, 1390
BglI	GCCNNNNNGGC	1 cut(s)	533
BisI	GCNGC	7 cut(s)	5, 96, 873, 876, 924, 945, 1145
BlsI	GCNGC	7 cut(s)	6, 97, 874, 877, 925, 946, 1146
BmcAI	AGTACT	2 cut(s)	883, 1113
Bme1390I	CCNGG	2 cut(s)	407, 1332
BmeT110I	CYCGRG	3 cut(s)	885, 927, 1211
BmgBI	CACGTC	1 cut(s)	1019
BmiI	GGNNCC	3 cut(s)	411, 622, 1068
BmrFI	CCNGG	2 cut(s)	407, 1332
BmsI	GCATC	2 cut(s)	1305, 1384
BpiI	GAAGAC	1 cut(s)	637
BpmI	CTGGAG	2 cut(s)	339, 1314
Bsa29I	ATCGAT	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 401
Bse1I	ACTGG	3 cut(s)	186, 226, 356
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	407, 1332
BseCI	ATCGAT	1 cut(s)	146
BseGI	GGATG	1 cut(s)	1145
BseLI	CCNNNNNNNGG	2 cut(s)	270, 401
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	5 cut(s)	654, 972, 1098, 1131, 1328
BseNI	ACTGG	3 cut(s)	186, 226, 356
BseSI	GKGCMC	1 cut(s)	1227
BseXI	GCAGC	7 cut(s)	16, 82, 859, 862, 931, 935, 1156
BseYI	CCCAGC	2 cut(s)	550, 616
BsgI	GTGCAG	2 cut(s)	81, 444
Bsh1285I	CGRYCG	1 cut(s)	1003
BshFI	GGCC	3 cut(s)	405, 780, 1242
BshNI	GGYRCC	1 cut(s)	1066
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	1003
BsiHKAI	GWGCWC	1 cut(s)	1227
BsiHKCI	CYCGRG	3 cut(s)	885, 927, 1211
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	2 cut(s)	36, 1029
BslI	CCNNNNNNNGG	2 cut(s)	270, 401
BsmAI	GTCTC	3 cut(s)	368, 477, 797
BsmFI	GGGAC	2 cut(s)	36, 1029
BsnI	GGCC	3 cut(s)	405, 780, 1242
BsoBI	CYCGRG	3 cut(s)	885, 927, 1211
Bsp1286I	GDGCHC	1 cut(s)	1227
Bsp143I	GATC	4 cut(s)	169, 409, 1340, 1345
BspACI	CCGC	1 cut(s)	999
BspANI	GGCC	3 cut(s)	405, 780, 1242
BspCNI	CTCAG	5 cut(s)	653, 971, 1097, 1130, 1329
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	411, 622, 1068
BspMAI	CTGCAG	3 cut(s)	126, 949, 1401
BspMI	ACCTGC	3 cut(s)	239, 1030, 1390
BspPI	GGATC	3 cut(s)	404, 417, 1335
BspT107I	GGYRCC	1 cut(s)	1066
BspTI	CTTAAG	1 cut(s)	1228
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	3 cut(s)	186, 226, 356
BssMI	GATC	4 cut(s)	169, 409, 1340, 1345
Bst2UI	CCWGG	2 cut(s)	407, 1332
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	518, 1290
BstAFI	CTTAAG	1 cut(s)	1228
BstC8I	GCNNGC	3 cut(s)	276, 433, 758
BstDEI	CTNAG	5 cut(s)	640, 958, 1084, 1117, 1337
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	1145
BstH2I	RGCGCY	1 cut(s)	974
BstHHI	GCGC	1 cut(s)	973
BstKTI	GATC	4 cut(s)	172, 412, 1343, 1348
BstMAI	GTCTC	3 cut(s)	368, 477, 797
BstMBI	GATC	4 cut(s)	169, 409, 1340, 1345
BstMCI	CGRYCG	1 cut(s)	1003
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 533, 932, 941, 1064
BstNI	CCWGG	2 cut(s)	407, 1332
BstSCI	CCNGG	2 cut(s)	405, 1330
BstSFI	CTRYAG	3 cut(s)	122, 945, 1397
BstSLI	GKGCMC	1 cut(s)	1227
BstV1I	GCAGC	7 cut(s)	16, 82, 859, 862, 931, 935, 1156
BstV2I	GAAGAC	1 cut(s)	637
BstX2I	RGATCY	2 cut(s)	409, 1340
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	2 cut(s)	409, 1340
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	405, 780, 1242
BsuTUI	ATCGAT	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	1019
BtsCI	GGATG	1 cut(s)	1145
BtsI	GCAGTG	4 cut(s)	117, 954, 1036, 1394
BtsIMutI	CAGTG	7 cut(s)	117, 193, 219, 954, 963, 1036, 1394
BveI	ACCTGC	3 cut(s)	239, 1030, 1390
Cac8I	GCNNGC	3 cut(s)	276, 433, 758
CaiI	CAGNNNCTG	1 cut(s)	965
CfoI	GCGC	1 cut(s)	973
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	6 cut(s)	119, 321, 882, 1112, 1208, 1403
CviAII	CATG	4 cut(s)	379, 531, 689, 1361
CviQI	GTAC	6 cut(s)	119, 321, 882, 1112, 1208, 1403
DdeI	CTNAG	5 cut(s)	640, 958, 1084, 1117, 1337
DpnI	GATC	4 cut(s)	171, 411, 1342, 1347
DpnII	GATC	4 cut(s)	169, 409, 1340, 1345
Eam1104I	CTCTTC	2 cut(s)	518, 1290
EarI	CTCTTC	2 cut(s)	518, 1290
Eco147I	AGGCCT	1 cut(s)	1242
Eco32I	GATATC	2 cut(s)	333, 420
Eco47III	AGCGCT	1 cut(s)	972
Eco57I	CTGAAG	4 cut(s)	410, 568, 792, 987
Eco88I	CYCGRG	3 cut(s)	885, 927, 1211
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	405, 1330
EcoRV	GATATC	2 cut(s)	333, 420
FaeI	CATG	4 cut(s)	382, 534, 692, 1364
FaqI	GGGAC	2 cut(s)	36, 1029
FatI	CATG	4 cut(s)	378, 530, 688, 1360
FauNDI	CATATG	2 cut(s)	821, 859
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	7 cut(s)	5, 96, 873, 876, 924, 945, 1145
FokI	GGATG	1 cut(s)	1152
Fsp4HI	GCNGC	7 cut(s)	5, 96, 873, 876, 924, 945, 1145
FspBI	CTAG	4 cut(s)	14, 140, 800, 1128
GlaI	GCGC	1 cut(s)	972
GluI	GCNGC	7 cut(s)	5, 96, 873, 876, 924, 945, 1145
GsaI	CCCAGC	2 cut(s)	554, 620
GsuI	CTGGAG	2 cut(s)	339, 1314
HaeII	RGCGCY	1 cut(s)	974
HaeIII	GGCC	3 cut(s)	405, 780, 1242
HapII	CCGG	1 cut(s)	777
HhaI	GCGC	1 cut(s)	973
Hin1II	CATG	4 cut(s)	382, 534, 692, 1364
Hin6I	GCGC	1 cut(s)	971
HinP1I	GCGC	1 cut(s)	971
HinfI	GANTC	3 cut(s)	470, 677, 1327
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	2 cut(s)	202, 1291
Hpy166II	GTNNAC	2 cut(s)	1048, 1225
Hpy188I	TCNGA	4 cut(s)	161, 741, 1074, 1345
Hpy188III	TCNNGA	3 cut(s)	167, 240, 649
Hpy8I	GTNNAC	2 cut(s)	1048, 1225
HpyAV	CCTTC	5 cut(s)	73, 242, 434, 592, 791
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 533, 932, 941, 1064
HpyF3I	CTNAG	5 cut(s)	640, 958, 1084, 1117, 1337
HpySE526I	ACGT	1 cut(s)	1018
Hsp92II	CATG	4 cut(s)	382, 534, 692, 1364
HspAI	GCGC	1 cut(s)	971
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	169, 409, 1340, 1345
LmnI	GCTCC	5 cut(s)	284, 869, 905, 1369, 1372
Lsp1109I	GCAGC	7 cut(s)	16, 82, 859, 862, 931, 935, 1156
LweI	GCATC	2 cut(s)	1305, 1384
MaeI	CTAG	4 cut(s)	14, 140, 800, 1128
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	3 cut(s)	112, 217, 961
MalI	GATC	4 cut(s)	171, 411, 1342, 1347
MboI	GATC	4 cut(s)	169, 409, 1340, 1345
MboII	GAAGA	8 cut(s)	50, 88, 122, 500, 505, 637, 677, 1277
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	409, 1340
MhlI	GDGCHC	1 cut(s)	1227
MluCI	AATT	6 cut(s)	195, 386, 666, 899, 1312, 1356
MlyI	GAGTC	2 cut(s)	479, 1321
MmeI	TCCRAC	3 cut(s)	139, 673, 1168
MnlI	CCTC	8 cut(s)	76, 363, 505, 538, 649, 1080, 1091, 1124
MseI	TTAA	1 cut(s)	1229
MspCI	CTTAAG	1 cut(s)	1228
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	2 cut(s)	407, 1332
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	2 cut(s)	407, 1332
MwoI	GCNNNNNNNGC	5 cut(s)	284, 533, 932, 941, 1064
NdeI	CATATG	2 cut(s)	821, 859
NdeII	GATC	4 cut(s)	169, 409, 1340, 1345
NlaIII	CATG	4 cut(s)	382, 534, 692, 1364
NlaIV	GGNNCC	3 cut(s)	411, 622, 1068
NmuCI	GTSAC	3 cut(s)	112, 217, 961
PaeR7I	CTCGAG	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	1242
PfeI	GAWTC	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	1330
PkrI	GCNGC	7 cut(s)	6, 97, 874, 877, 925, 946, 1146
PleI	GAGTC	2 cut(s)	478, 1321
PpsI	GAGTC	2 cut(s)	478, 1321
Psp6I	CCWGG	2 cut(s)	405, 1330
PspFI	CCCAGC	2 cut(s)	550, 616
PspGI	CCWGG	2 cut(s)	405, 1330
PspN4I	GGNNCC	3 cut(s)	411, 622, 1068
PspXI	VCTCGAGB	1 cut(s)	927
PstI	CTGCAG	3 cut(s)	126, 949, 1401
PstNI	CAGNNNCTG	1 cut(s)	965
PsuI	RGATCY	2 cut(s)	409, 1340
RsaI	GTAC	6 cut(s)	120, 322, 883, 1113, 1209, 1404
RsaNI	GTAC	6 cut(s)	119, 321, 882, 1112, 1208, 1403
SaqAI	TTAA	1 cut(s)	1229
SatI	GCNGC	7 cut(s)	5, 96, 873, 876, 924, 945, 1145
Sau3AI	GATC	4 cut(s)	169, 409, 1340, 1345
ScaI	AGTACT	2 cut(s)	883, 1113
SchI	GAGTC	2 cut(s)	479, 1321
ScrFI	CCNGG	2 cut(s)	407, 1332
SduI	GDGCHC	1 cut(s)	1227
SfaNI	GCATC	2 cut(s)	1305, 1384
SfcI	CTRYAG	3 cut(s)	122, 945, 1397
Sfr274I	CTCGAG	1 cut(s)	927
SlaI	CTCGAG	1 cut(s)	927
SmlI	CTYRAG	2 cut(s)	927, 1228
SmoI	CTYRAG	2 cut(s)	927, 1228
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	6 cut(s)	195, 386, 666, 899, 1312, 1356
SseBI	AGGCCT	1 cut(s)	1242
SsiI	CCGC	1 cut(s)	999
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	4 cut(s)	14, 140, 800, 1128
StuI	AGGCCT	1 cut(s)	1242
StyD4I	CCNGG	2 cut(s)	405, 1330
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	3 cut(s)	146, 648, 928
TasI	AATT	6 cut(s)	195, 386, 666, 899, 1312, 1356
TatI	WGTACW	3 cut(s)	320, 881, 1111
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	1 cut(s)	1229
Tru9I	TTAA	1 cut(s)	1229
TscAI	CASTG	7 cut(s)	117, 193, 226, 954, 970, 1036, 1401
TseFI	GTSAC	3 cut(s)	112, 217, 961
TseI	GCWGC	7 cut(s)	4, 95, 872, 875, 923, 944, 1144
Tsp45I	GTSAC	3 cut(s)	112, 217, 961
TspDTI	ATGAA	5 cut(s)	51, 367, 677, 912, 1349
TspRI	CASTG	7 cut(s)	117, 193, 226, 954, 970, 1036, 1401
Vha464I	CTTAAG	1 cut(s)	1228
VneI	GTGCAC	1 cut(s)	1223
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	386
XhoI	CTCGAG	1 cut(s)	927
XspI	CTAG	4 cut(s)	14, 140, 800, 1128
ZrmI	AGTACT	2 cut(s)	883, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.