pycom13g02800

cyclin-D1-binding protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002883
Physical Location & Seq
Forward (+)
1929342 .. 1930128
787 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02800.1

Sequence Viewer

Length: 306 bp
ATGGGCCGAGCCGAAAGAGAGCAACTGACTCGAACTCTCAACCACCACCTCAACACCGTCCACGAGACCTTCCAGGTGTTGGATCAAACCGCACCTTCAACGCTTGAGAAGGTGAGCTGGGCGGAGGTGATAAAGATGGGCGATCAATTGGAATGCTTTGGACCGGAGGAGAAACGCTGCAAGTTAGAGCACTTGAAGAAAACATGGTTTCCTACTTCAATACCCTGCAAGGTTTTCTTCTGCTTTCGCATGGGAGTACAGTCGGTGCAGGGCCTACGCTGGCTTCTTGTGTCCATACGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCIP

Protein Analysis

102

Amino Acids

11.82

Weight (kDa)

8.82

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 2 cut(s) 90, 122
AclWI GGATC 1 cut(s) 90
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 99, 196, 219
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 90
AoxI GGCC 2 cut(s) 4, 271
ApeKI GCWGC 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 4, 161, 271
AsuHPI GGTGA 2 cut(s) 124, 139
AvaII GGWCC 1 cut(s) 161
BauI CACGAG 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 3 cut(s) 4, 161, 271
BmrFI CCNGG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 287
BshFI GGCC 2 cut(s) 6, 273
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 2 cut(s) 6, 273
Bso31I GGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 82, 142
BspACI CCGC 2 cut(s) 90, 122
BspANI GGCC 2 cut(s) 6, 273
BspPI GGATC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 59
BssMI GATC 2 cut(s) 82, 142
BssSI CACGAG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 58, 261
BstC8I GCNNGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 85, 145
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 82, 142
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 164
BsuRI GGCC 2 cut(s) 6, 273
Cac8I GCNNGC 1 cut(s) 281
Cfr13I GGNCC 3 cut(s) 4, 161, 271
Csp6I GTAC 1 cut(s) 257
CviAII CATG 2 cut(s) 204, 250
CviJI RGCY 5 cut(s) 6, 11, 117, 273, 283
CviKI_1 RGCY 5 cut(s) 6, 11, 117, 273, 283
CviQI GTAC 1 cut(s) 257
DpnI GATC 2 cut(s) 84, 144
DpnII GATC 2 cut(s) 82, 142
EciI GGCGGA 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 207, 253
FaiI YATR 3 cut(s) 205, 251, 296
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 2 cut(s) 203, 249
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 2 cut(s) 6, 273
HapII CCGG 1 cut(s) 164
Hin1II CATG 2 cut(s) 207, 253
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 124, 139
Hpy166II GTNNAC 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 79, 103, 105
HpyCH4III ACNGT 2 cut(s) 58, 261
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 180, 228, 268
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 2 cut(s) 207, 253
Kzo9I GATC 2 cut(s) 82, 142
LpnPI CCDG 7 cut(s) 59, 86, 103, 177, 238, 254, 265
Lsp1109I GCAGC 1 cut(s) 164
MaeII ACGT 1 cut(s) 298
MalI GATC 2 cut(s) 84, 144
MboI GATC 2 cut(s) 82, 142
MboII GAAGA 2 cut(s) 208, 229
MfeI CAATTG 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 146
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 3 cut(s) 59, 118, 160
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 1 cut(s) 74
NdeII GATC 2 cut(s) 82, 142
NlaIII CATG 2 cut(s) 207, 253
NmeAIII GCCGAG 1 cut(s) 32
PctI GAATGC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 3 cut(s) 4, 161, 271
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 82, 142
Sau96I GGNCC 3 cut(s) 4, 161, 271
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 192
SetI ASST 9 cut(s) 51, 71, 78, 97, 114, 119, 129, 234, 301
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 146
SsiI CCGC 2 cut(s) 90, 122
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 58, 261
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 31
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 256
TseI GCWGC 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.