RchiOBHm_Chr4g0414771

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002883
Physical Location & Seq
Forward (+)
39322127 .. 39323304
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38512

Sequence Viewer

Length: 753 bp
ATGCTGGGTTCCTATGCAATGTATTCCTCAGTCTTCGAGAAAACCCGTATTACAATTTCAAAAGATTCTATTCTTCATGTTGGAGAGTTCTTTCGCTTGGCTATCCCGTCTGCTGTAATGGGTTGTCTGAAATGGTGGTCGTGCGAGCTACTTATTTTGCTGTCAGGCCTTCTACCAAATCCTAAACTAGAGACTTCAGTTCTTTCCATATGCCTTACAATCTCTACTTTGCACTTCACTTTATCATATGGATTTGGAGCTGCTGCAAGTACTCGGGTATCAAATGAATTAGGAGCTGGTAATCCACAAGCAGCTCGAGTAGCTGTTCAGGCTGCAGTGTTTCTCTCAGTCACTGAGGCGATTATTGTAAGCACAACCCTCTTTTGCTGTCGCTATGTTTTGGGGAGTGCTTTCAGCAGTGAGACGCAGGTAGCGGACTATGTTGCAGTTATGACACCTCTGATTTGCCTCTCAGTTTTTATGGACAGTTTACAAGCAGTACTCTCAGGGGTAGCTAGAGGAAGTGGATGGCAGCATTTGGGGGCGTATGTCAATCTTGGGGCATTTTATTTGGTTGGACTTCCTGTGGCTATGGTACTCGGGTTTCCTGTGCACTTAAGGGGGAAAGGCCTTTGGATTGGAATAGTGGTCGGCTCCGCTGTACAATCAACTCTTCTGGGTTGCATCACCTGTTTCACAAATTGGACTAAACAGGTTCATAACTCTATTTTTTTCAACAAAAATTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

250

Amino Acids

26.83

Weight (kDa)

8.64

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 36 - 198 3.2e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 418
AciI CCGC 2 cut(s) 434, 657
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 4 cut(s) 271, 501, 597, 663
AflII CTTAAG 1 cut(s) 616
AgsI TTSAA 2 cut(s) 60, 736
AluBI AGCT 6 cut(s) 148, 260, 296, 314, 323, 515
AluI AGCT 6 cut(s) 148, 260, 296, 314, 323, 515
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 2 cut(s) 185, 416
Alw44I GTGCAC 1 cut(s) 611
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 3 cut(s) 273, 315, 599
AoxI GGCC 2 cut(s) 166, 628
ApaLI GTGCAC 1 cut(s) 611
ApeKI GCWGC 5 cut(s) 260, 263, 311, 332, 532
ApoI RAATTY 1 cut(s) 742
AsuHPI GGTGA 1 cut(s) 679
AvaI CYCGRG 3 cut(s) 273, 315, 599
BaeGI GKGCMC 1 cut(s) 615
BaeI ACNNNNGTAYC 4 cut(s) 261, 294, 587, 620
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 5 cut(s) 247, 250, 319, 323, 544
BccI CCATC 1 cut(s) 522
BcoDI GTCTC 2 cut(s) 185, 416
BfaI CTAG 2 cut(s) 188, 516
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 418
BisI GCNGC 5 cut(s) 261, 264, 312, 333, 533
BlsI GCNGC 5 cut(s) 262, 265, 313, 334, 534
BmcAI AGTACT 2 cut(s) 271, 501
BmeT110I CYCGRG 3 cut(s) 273, 315, 599
BmiI GGNNCC 2 cut(s) 10, 655
BmsI GCATC 1 cut(s) 693
BpiI GAAGAC 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 24
BseGI GGATG 1 cut(s) 533
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 5 cut(s) 42, 345, 360, 486, 519
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 5 cut(s) 247, 250, 319, 323, 544
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 2 cut(s) 168, 630
BsiHKAI GWGCWC 1 cut(s) 615
BsiHKCI CYCGRG 3 cut(s) 273, 315, 599
BsmAI GTCTC 2 cut(s) 185, 416
BsmBI CGTCTC 1 cut(s) 416
BsnI GGCC 2 cut(s) 168, 630
BsoBI CYCGRG 3 cut(s) 273, 315, 599
Bsp1286I GDGCHC 1 cut(s) 615
Bsp1407I TGTACA 1 cut(s) 661
BspACI CCGC 2 cut(s) 434, 657
BspANI GGCC 2 cut(s) 168, 630
BspCNI CTCAG 5 cut(s) 41, 346, 359, 485, 518
BspLI GGNNCC 2 cut(s) 10, 655
BspMAI CTGCAG 1 cut(s) 337
BspMI ACCTGC 1 cut(s) 418
BspTI CTTAAG 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 678
BstAFI CTTAAG 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 5 cut(s) 28, 346, 354, 472, 505
BstF5I GGATG 1 cut(s) 533
BstMAI GTCTC 2 cut(s) 185, 416
BstMWI GCNNNNNNNGC 2 cut(s) 320, 329
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 615
BstV1I GCAGC 5 cut(s) 247, 250, 319, 323, 544
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 168, 630
BtsCI GGATG 1 cut(s) 533
BtsI GCAGTG 2 cut(s) 342, 424
BtsIMutI CAGTG 3 cut(s) 342, 351, 424
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 146
CaiI CAGNNNCTG 1 cut(s) 353
CseI GACGC 1 cut(s) 433
Csp6I GTAC 4 cut(s) 270, 500, 596, 662
CviAII CATG 1 cut(s) 77
CviQI GTAC 4 cut(s) 270, 500, 596, 662
DdeI CTNAG 5 cut(s) 28, 346, 354, 472, 505
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Eco147I AGGCCT 2 cut(s) 168, 630
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 3 cut(s) 273, 315, 599
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 1 cut(s) 80
FatI CATG 1 cut(s) 76
FauNDI CATATG 2 cut(s) 209, 247
Fnu4HI GCNGC 5 cut(s) 261, 264, 312, 333, 533
FokI GGATG 1 cut(s) 540
Fsp4HI GCNGC 5 cut(s) 261, 264, 312, 333, 533
FspBI CTAG 2 cut(s) 188, 516
GluI GCNGC 5 cut(s) 261, 264, 312, 333, 533
GsaI CCCAGC 1 cut(s) 8
HaeIII GGCC 2 cut(s) 168, 630
HgaI GACGC 1 cut(s) 433
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 679
Hpy166II GTNNAC 2 cut(s) 491, 613
Hpy188I TCNGA 2 cut(s) 129, 462
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 491, 613
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 7 cut(s) 17, 232, 266, 335, 446, 613, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 329
HpyF3I CTNAG 5 cut(s) 28, 346, 354, 472, 505
Hsp92II CATG 1 cut(s) 80
LmnI GCTCC 3 cut(s) 257, 293, 659
Lsp1109I GCAGC 5 cut(s) 247, 250, 319, 323, 544
LweI GCATC 1 cut(s) 693
MaeI CTAG 2 cut(s) 188, 516
MaeIII GTNAC 1 cut(s) 349
MboII GAAGA 3 cut(s) 25, 65, 665
MhlI GDGCHC 1 cut(s) 615
MluCI AATT 5 cut(s) 54, 287, 700, 742, 747
MmeI TCCRAC 2 cut(s) 61, 556
MnlI CCTC 6 cut(s) 37, 349, 389, 468, 479, 512
MseI TTAA 3 cut(s) 617, 746, 751
MspA1I CMGCKG 1 cut(s) 659
MspCI CTTAAG 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 320, 329
NdeI CATATG 2 cut(s) 209, 247
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 10, 655
NmuCI GTSAC 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 315
PceI AGGCCT 2 cut(s) 168, 630
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 5 cut(s) 262, 265, 313, 334, 534
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 10, 655
PspXI VCTCGAGB 1 cut(s) 315
PstI CTGCAG 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 353
RsaI GTAC 4 cut(s) 271, 501, 597, 663
RsaNI GTAC 4 cut(s) 270, 500, 596, 662
SaqAI TTAA 3 cut(s) 617, 746, 751
SatI GCNGC 5 cut(s) 261, 264, 312, 333, 533
ScaI AGTACT 2 cut(s) 271, 501
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 1 cut(s) 693
SfcI CTRYAG 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 315, 616
SmoI CTYRAG 2 cut(s) 315, 616
Sse9I AATT 5 cut(s) 54, 287, 700, 742, 747
SseBI AGGCCT 2 cut(s) 168, 630
SsiI CCGC 2 cut(s) 434, 657
SspMI CTAG 2 cut(s) 188, 516
StuI AGGCCT 2 cut(s) 168, 630
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 36, 316
TasI AATT 5 cut(s) 54, 287, 700, 742, 747
TatI WGTACW 3 cut(s) 269, 499, 661
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 617, 746, 751
Tru9I TTAA 3 cut(s) 617, 746, 751
TscAI CASTG 3 cut(s) 342, 358, 424
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 5 cut(s) 260, 263, 311, 332, 532
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 65, 300, 707
TspRI CASTG 3 cut(s) 342, 358, 424
Vha464I CTTAAG 1 cut(s) 616
VneI GTGCAC 1 cut(s) 611
XapI RAATTY 1 cut(s) 742
XhoI CTCGAG 1 cut(s) 315
XspI CTAG 2 cut(s) 188, 516
ZrmI AGTACT 2 cut(s) 271, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.