Peptidase family M3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_M3 | PF01432 | 264 - 704 | 8.8e-90 | Peptidase family M3 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 83 |
| AccI | GTMKAC | 1 cut(s) | 242 |
| AccIII | TCCGGA | 1 cut(s) | 511 |
| AciI | CCGC | 3 cut(s) | 83, 86, 413 |
| AclI | AACGTT | 2 cut(s) | 63, 1711 |
| AclWI | GGATC | 3 cut(s) | 46, 1199, 1303 |
| AcoI | YGGCCR | 1 cut(s) | 1513 |
| AcsI | RAATTY | 7 cut(s) | 480, 646, 710, 721, 746, 1226, 1970 |
| AcuI | CTGAAG | 5 cut(s) | 243, 701, 1361, 1730, 1929 |
| AcvI | CACGTG | 1 cut(s) | 1892 |
| AfaI | GTAC | 1 cut(s) | 406 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 813, 1587, 2039 |
| AflIII | ACRYGT | 3 cut(s) | 1329, 1570, 1916 |
| AgsI | TTSAA | 4 cut(s) | 130, 1054, 1642, 1968 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 104 |
| AjiI | CACGTC | 2 cut(s) | 775, 1489 |
| AjnI | CCWGG | 3 cut(s) | 166, 987, 2032 |
| AleI | CACNNNNGTG | 1 cut(s) | 1362 |
| Alw26I | GTCTC | 5 cut(s) | 138, 540, 595, 674, 2010 |
| AlwI | GGATC | 3 cut(s) | 46, 1199, 1303 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 538, 1298 |
| Ama87I | CYCGRG | 1 cut(s) | 1561 |
| Aor13HI | TCCGGA | 1 cut(s) | 511 |
| AoxI | GGCC | 3 cut(s) | 1513, 1564, 2028 |
| ApeKI | GCWGC | 3 cut(s) | 488, 779, 1949 |
| ApoI | RAATTY | 7 cut(s) | 480, 646, 710, 721, 746, 1226, 1970 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 231, 714 |
| AspS9I | GGNCC | 5 cut(s) | 1180, 1210, 1522, 1564, 2029 |
| AsuC2I | CCSGG | 1 cut(s) | 1189 |
| AsuHPI | GGTGA | 6 cut(s) | 67, 748, 988, 1472, 1663, 2056 |
| AsuNHI | GCTAGC | 1 cut(s) | 2108 |
| AvaI | CYCGRG | 1 cut(s) | 1561 |
| AvaII | GGWCC | 3 cut(s) | 1180, 1210, 1522 |
| BalI | TGGCCA | 1 cut(s) | 1515 |
| BauI | CACGAG | 1 cut(s) | 246 |
| BbrPI | CACGTG | 1 cut(s) | 1892 |
| BbsI | GAAGAC | 4 cut(s) | 155, 824, 1053, 1817 |
| BbvI | GCAGC | 3 cut(s) | 475, 791, 1936 |
| BccI | CCATC | 3 cut(s) | 1445, 1973, 2095 |
| BceAI | ACGGC | 3 cut(s) | 89, 295, 1265 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1722, 1756 |
| BciT130I | CCWGG | 3 cut(s) | 168, 989, 2034 |
| BclI | TGATCA | 2 cut(s) | 978, 1771 |
| BcnI | CCSGG | 1 cut(s) | 1189 |
| BcoDI | GTCTC | 5 cut(s) | 138, 540, 595, 674, 2010 |
| BfaI | CTAG | 7 cut(s) | 278, 330, 402, 707, 788, 1554, 2109 |
| BfmI | CTRYAG | 3 cut(s) | 445, 530, 2122 |
| BglII | AGATCT | 1 cut(s) | 1093 |
| BisI | GCNGC | 4 cut(s) | 84, 489, 780, 1950 |
| BlpI | GCTNAGC | 1 cut(s) | 626 |
| BlsI | GCNGC | 4 cut(s) | 85, 490, 781, 1951 |
| Bme1390I | CCNGG | 4 cut(s) | 168, 989, 1189, 2034 |
| Bme18I | GGWCC | 3 cut(s) | 1180, 1210, 1522 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 104 |
| BmeT110I | CYCGRG | 1 cut(s) | 1561 |
| BmgBI | CACGTC | 2 cut(s) | 775, 1489 |
| BmgT120I | GGNCC | 5 cut(s) | 1180, 1210, 1522, 1564, 2029 |
| BmiI | GGNNCC | 4 cut(s) | 986, 1867, 2031, 2085 |
| BmrFI | CCNGG | 4 cut(s) | 168, 989, 1189, 2034 |
| BmsI | GCATC | 3 cut(s) | 247, 1786, 1993 |
| BmtI | GCTAGC | 1 cut(s) | 2112 |
| BoxI | GACNNNNGTC | 1 cut(s) | 561 |
| BpiI | GAAGAC | 4 cut(s) | 155, 824, 1053, 1817 |
| BpmI | CTGGAG | 2 cut(s) | 1010, 1793 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 626 |
| BpuMI | CCSGG | 1 cut(s) | 1189 |
| Bsa29I | ATCGAT | 1 cut(s) | 503 |
| BsaAI | YACGTR | 2 cut(s) | 1571, 1892 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1983 |
| BsaJI | CCNNGG | 2 cut(s) | 759, 2032 |
| BsaWI | WCCGGW | 3 cut(s) | 77, 468, 511 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1115, 1145 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 813, 1587, 2039 |
| Bse118I | RCCGGY | 1 cut(s) | 2000 |
| Bse1I | ACTGG | 3 cut(s) | 1005, 1622, 1853 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1983 |
| BseAI | TCCGGA | 1 cut(s) | 511 |
| BseBI | CCWGG | 3 cut(s) | 168, 989, 2034 |
| BseCI | ATCGAT | 1 cut(s) | 503 |
| BseDI | CCNNGG | 2 cut(s) | 759, 2032 |
| BseGI | GGATG | 6 cut(s) | 691, 960, 1456, 1693, 1828, 1984 |
| BseJI | GATNNNNATC | 1 cut(s) | 1983 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 813, 1587, 2039 |
| BseMII | CTCAG | 3 cut(s) | 672, 1305, 1616 |
| BseNI | ACTGG | 3 cut(s) | 1005, 1622, 1853 |
| BseRI | GAGGAG | 3 cut(s) | 1136, 1247, 2052 |
| BseXI | GCAGC | 3 cut(s) | 475, 791, 1936 |
| BsgI | GTGCAG | 1 cut(s) | 1716 |
| BshFI | GGCC | 3 cut(s) | 1515, 1566, 2030 |
| BshVI | ATCGAT | 1 cut(s) | 503 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1561 |
| BsiSI | CCGG | 7 cut(s) | 78, 469, 512, 1156, 1188, 2001, 2113 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 813, 1587, 2039 |
| BsmAI | GTCTC | 5 cut(s) | 138, 540, 595, 674, 2010 |
| BsnI | GGCC | 3 cut(s) | 1515, 1566, 2030 |
| BsoBI | CYCGRG | 1 cut(s) | 1561 |
| Bsp13I | TCCGGA | 1 cut(s) | 511 |
| Bsp143I | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 626 |
| BspACI | CCGC | 3 cut(s) | 83, 86, 413 |
| BspANI | GGCC | 3 cut(s) | 1515, 1566, 2030 |
| BspCNI | CTCAG | 3 cut(s) | 673, 1304, 1615 |
| BspDI | ATCGAT | 1 cut(s) | 503 |
| BspEI | TCCGGA | 1 cut(s) | 511 |
| BspHI | TCATGA | 3 cut(s) | 253, 1261, 1504 |
| BspLI | GGNNCC | 4 cut(s) | 986, 1867, 2031, 2085 |
| BspMAI | CTGCAG | 1 cut(s) | 449 |
| BspOI | GCTAGC | 1 cut(s) | 2112 |
| BspPI | GGATC | 3 cut(s) | 46, 1199, 1303 |
| BspQI | GCTCTTC | 1 cut(s) | 1380 |
| BsrBI | CCGCTC | 1 cut(s) | 83 |
| BsrFI | RCCGGY | 1 cut(s) | 2000 |
| BsrI | ACTGG | 3 cut(s) | 1005, 1622, 1853 |
| BssAI | RCCGGY | 1 cut(s) | 2000 |
| BssECI | CCNNGG | 2 cut(s) | 759, 2032 |
| BssMI | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| BssSI | CACGAG | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 1 cut(s) | 759 |
| Bst2BI | CACGAG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 3 cut(s) | 168, 989, 2034 |
| Bst4CI | ACNGT | 7 cut(s) | 181, 534, 823, 1392, 1440, 1763, 1925 |
| Bst6I | CTCTTC | 2 cut(s) | 1049, 1380 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 938, 1442 |
| BstBAI | YACGTR | 2 cut(s) | 1571, 1892 |
| BstC8I | GCNNGC | 6 cut(s) | 632, 693, 907, 2002, 2006, 2110 |
| BstDEI | CTNAG | 6 cut(s) | 48, 366, 626, 681, 1291, 1602 |
| BstF5I | GGATG | 6 cut(s) | 691, 960, 1456, 1693, 1828, 1984 |
| BstKTI | GATC | 8 cut(s) | 41, 949, 981, 1096, 1138, 1194, 1298, 1774 |
| BstMAI | GTCTC | 5 cut(s) | 138, 540, 595, 674, 2010 |
| BstMBI | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 631, 929, 938, 1442, 1550, 2105 |
| BstNI | CCWGG | 3 cut(s) | 168, 989, 2034 |
| BstNSI | RCATGY | 4 cut(s) | 909, 1333, 1410, 1920 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 561 |
| BstSCI | CCNGG | 4 cut(s) | 166, 987, 1187, 2032 |
| BstSFI | CTRYAG | 3 cut(s) | 445, 530, 2122 |
| BstV1I | GCAGC | 3 cut(s) | 475, 791, 1936 |
| BstV2I | GAAGAC | 4 cut(s) | 155, 824, 1053, 1817 |
| BstX2I | RGATCY | 4 cut(s) | 38, 1093, 1191, 1295 |
| BstYI | RGATCY | 4 cut(s) | 38, 1093, 1191, 1295 |
| Bsu15I | ATCGAT | 1 cut(s) | 503 |
| BsuRI | GGCC | 3 cut(s) | 1515, 1566, 2030 |
| BsuTUI | ATCGAT | 1 cut(s) | 503 |
| BtgZI | GCGATG | 1 cut(s) | 2089 |
| BtrI | CACGTC | 2 cut(s) | 775, 1489 |
| BtsCI | GGATG | 6 cut(s) | 691, 960, 1456, 1693, 1828, 1984 |
| BtsIMutI | CAGTG | 3 cut(s) | 539, 1388, 1860 |
| Cac8I | GCNNGC | 6 cut(s) | 632, 693, 907, 2002, 2006, 2110 |
| CaiI | CAGNNNCTG | 2 cut(s) | 538, 1298 |
| CciI | TCATGA | 3 cut(s) | 253, 1261, 1504 |
| Cfr10I | RCCGGY | 1 cut(s) | 2000 |
| Cfr13I | GGNCC | 5 cut(s) | 1180, 1210, 1522, 1564, 2029 |
| ClaI | ATCGAT | 1 cut(s) | 503 |
| CseI | GACGC | 1 cut(s) | 437 |
| Csp6I | GTAC | 1 cut(s) | 405 |
| CviAII | CATG | 9 cut(s) | 254, 906, 1262, 1330, 1407, 1505, 1517, 1881, 1917 |
| CviQI | GTAC | 1 cut(s) | 405 |
| DdeI | CTNAG | 6 cut(s) | 48, 366, 626, 681, 1291, 1602 |
| DpnI | GATC | 8 cut(s) | 40, 948, 980, 1095, 1137, 1193, 1297, 1773 |
| DpnII | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| DraI | TTTAAA | 2 cut(s) | 651, 1198 |
| DriI | GACNNNNNGTC | 1 cut(s) | 104 |
| EaeI | YGGCCR | 1 cut(s) | 1513 |
| Eam1104I | CTCTTC | 2 cut(s) | 1049, 1380 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 104 |
| EarI | CTCTTC | 2 cut(s) | 1049, 1380 |
| Eco130I | CCWWGG | 1 cut(s) | 759 |
| Eco32I | GATATC | 2 cut(s) | 1153, 1669 |
| Eco47I | GGWCC | 3 cut(s) | 1180, 1210, 1522 |
| Eco57I | CTGAAG | 5 cut(s) | 243, 701, 1361, 1730, 1929 |
| Eco72I | CACGTG | 1 cut(s) | 1892 |
| Eco88I | CYCGRG | 1 cut(s) | 1561 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1210 |
| EcoRII | CCWGG | 3 cut(s) | 166, 987, 2032 |
| EcoRV | GATATC | 2 cut(s) | 1153, 1669 |
| EcoT14I | CCWWGG | 1 cut(s) | 759 |
| ErhI | CCWWGG | 1 cut(s) | 759 |
| FaeI | CATG | 9 cut(s) | 257, 909, 1265, 1333, 1410, 1508, 1520, 1884, 1920 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 743, 775 |
| FatI | CATG | 9 cut(s) | 253, 905, 1261, 1329, 1406, 1504, 1516, 1880, 1916 |
| FauI | CCCGC | 1 cut(s) | 79 |
| FauNDI | CATATG | 1 cut(s) | 835 |
| FbaI | TGATCA | 2 cut(s) | 978, 1771 |
| FblI | GTMKAC | 1 cut(s) | 242 |
| Fnu4HI | GCNGC | 4 cut(s) | 84, 489, 780, 1950 |
| FokI | GGATG | 6 cut(s) | 698, 967, 1463, 1700, 1815, 1971 |
| Fsp4HI | GCNGC | 4 cut(s) | 84, 489, 780, 1950 |
| FspBI | CTAG | 7 cut(s) | 278, 330, 402, 707, 788, 1554, 2109 |
| GluI | GCNGC | 4 cut(s) | 84, 489, 780, 1950 |
| GsuI | CTGGAG | 2 cut(s) | 1010, 1793 |
| HaeIII | GGCC | 3 cut(s) | 1515, 1566, 2030 |
| HapII | CCGG | 7 cut(s) | 78, 469, 512, 1156, 1188, 2001, 2113 |
| HgaI | GACGC | 1 cut(s) | 437 |
| Hin1II | CATG | 9 cut(s) | 257, 909, 1265, 1333, 1410, 1508, 1520, 1884, 1920 |
| HincII | GTYRAC | 2 cut(s) | 1174, 1576 |
| HindII | GTYRAC | 2 cut(s) | 1174, 1576 |
| HindIII | AAGCTT | 2 cut(s) | 1304, 2097 |
| HpaII | CCGG | 7 cut(s) | 78, 469, 512, 1156, 1188, 2001, 2113 |
| HphI | GGTGA | 6 cut(s) | 67, 748, 988, 1472, 1663, 2056 |
| Hpy166II | GTNNAC | 7 cut(s) | 92, 190, 243, 466, 1174, 1335, 1576 |
| Hpy8I | GTNNAC | 7 cut(s) | 92, 190, 243, 466, 1174, 1335, 1576 |
| Hpy99I | CGWCG | 2 cut(s) | 431, 779 |
| HpyAV | CCTTC | 9 cut(s) | 8, 29, 82, 196, 1061, 1337, 1608, 1856, 2073 |
| HpyCH4III | ACNGT | 7 cut(s) | 181, 534, 823, 1392, 1440, 1763, 1925 |
| HpyCH4IV | ACGT | 8 cut(s) | 63, 454, 774, 1488, 1570, 1637, 1711, 1891 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 631, 929, 938, 1442, 1550, 2105 |
| HpyF3I | CTNAG | 6 cut(s) | 48, 366, 626, 681, 1291, 1602 |
| HpySE526I | ACGT | 8 cut(s) | 63, 454, 774, 1488, 1570, 1637, 1711, 1891 |
| Hsp92II | CATG | 9 cut(s) | 257, 909, 1265, 1333, 1410, 1508, 1520, 1884, 1920 |
| Kpn2I | TCCGGA | 1 cut(s) | 511 |
| KroI | GCCGGC | 1 cut(s) | 2000 |
| KroNI | GCCGGC | 1 cut(s) | 2002 |
| Ksp22I | TGATCA | 2 cut(s) | 978, 1771 |
| Kzo9I | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| LguI | GCTCTTC | 1 cut(s) | 1380 |
| LmnI | GCTCC | 2 cut(s) | 80, 415 |
| Lsp1109I | GCAGC | 3 cut(s) | 475, 791, 1936 |
| LweI | GCATC | 3 cut(s) | 247, 1786, 1993 |
| MaeI | CTAG | 7 cut(s) | 278, 330, 402, 707, 788, 1554, 2109 |
| MaeII | ACGT | 8 cut(s) | 63, 454, 774, 1488, 1570, 1637, 1711, 1891 |
| MaeIII | GTNAC | 8 cut(s) | 67, 524, 770, 870, 888, 1237, 1622, 1919 |
| MalI | GATC | 8 cut(s) | 40, 948, 980, 1095, 1137, 1193, 1297, 1773 |
| MbiI | CCGCTC | 1 cut(s) | 83 |
| MboI | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| MflI | RGATCY | 4 cut(s) | 38, 1093, 1191, 1295 |
| MlsI | TGGCCA | 1 cut(s) | 1515 |
| MluNI | TGGCCA | 1 cut(s) | 1515 |
| MlyI | GAGTC | 3 cut(s) | 93, 1283, 1831 |
| MmeI | TCCRAC | 1 cut(s) | 1549 |
| Mox20I | TGGCCA | 1 cut(s) | 1515 |
| MroI | TCCGGA | 1 cut(s) | 511 |
| MroNI | GCCGGC | 1 cut(s) | 2000 |
| MroXI | GAANNNNTTC | 2 cut(s) | 231, 714 |
| MscI | TGGCCA | 1 cut(s) | 1515 |
| MseI | TTAA | 6 cut(s) | 650, 750, 1010, 1197, 1494, 1646 |
| MslI | CAYNNNNRTG | 3 cut(s) | 387, 910, 1362 |
| Msp20I | TGGCCA | 1 cut(s) | 1515 |
| MspA1I | CMGCKG | 1 cut(s) | 1362 |
| MspI | CCGG | 7 cut(s) | 78, 469, 512, 1156, 1188, 2001, 2113 |
| MspR9I | CCNGG | 4 cut(s) | 168, 989, 1189, 2034 |
| MvaI | CCWGG | 3 cut(s) | 168, 989, 2034 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 631, 929, 938, 1442, 1550, 2105 |
| NaeI | GCCGGC | 1 cut(s) | 2002 |
| NciI | CCSGG | 1 cut(s) | 1189 |
| NdeI | CATATG | 1 cut(s) | 835 |
| NdeII | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| NgoMIV | GCCGGC | 1 cut(s) | 2000 |
| NheI | GCTAGC | 1 cut(s) | 2108 |
| NlaIII | CATG | 9 cut(s) | 257, 909, 1265, 1333, 1410, 1508, 1520, 1884, 1920 |
| NlaIV | GGNNCC | 4 cut(s) | 986, 1867, 2031, 2085 |
| NmuCI | GTSAC | 2 cut(s) | 770, 888 |
| NspI | RCATGY | 4 cut(s) | 909, 1333, 1410, 1920 |
| OliI | CACNNNNGTG | 1 cut(s) | 1362 |
| PaeI | GCATGC | 1 cut(s) | 909 |
| PagI | TCATGA | 3 cut(s) | 253, 1261, 1504 |
| PciI | ACATGT | 2 cut(s) | 1329, 1916 |
| PciSI | GCTCTTC | 1 cut(s) | 1380 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 18, 102 |
| PdiI | GCCGGC | 1 cut(s) | 2002 |
| PdmI | GAANNNNTTC | 2 cut(s) | 231, 714 |
| PfeI | GAWTC | 7 cut(s) | 208, 500, 1075, 1414, 1557, 1594, 1990 |
| PfoI | TCCNGGA | 2 cut(s) | 987, 1187 |
| PkrI | GCNGC | 4 cut(s) | 85, 490, 781, 1951 |
| PleI | GAGTC | 3 cut(s) | 93, 1283, 1830 |
| PmaCI | CACGTG | 1 cut(s) | 1892 |
| PmlI | CACGTG | 1 cut(s) | 1892 |
| PpsI | GAGTC | 3 cut(s) | 93, 1283, 1830 |
| Ppu21I | YACGTR | 2 cut(s) | 1571, 1892 |
| PpuMI | RGGWCCY | 1 cut(s) | 1210 |
| PscI | ACATGT | 2 cut(s) | 1329, 1916 |
| PshAI | GACNNNNGTC | 1 cut(s) | 561 |
| Psp1406I | AACGTT | 2 cut(s) | 63, 1711 |
| Psp5II | RGGWCCY | 1 cut(s) | 1210 |
| Psp6I | CCWGG | 3 cut(s) | 166, 987, 2032 |
| PspCI | CACGTG | 1 cut(s) | 1892 |
| PspGI | CCWGG | 3 cut(s) | 166, 987, 2032 |
| PspN4I | GGNNCC | 4 cut(s) | 986, 1867, 2031, 2085 |
| PspPI | GGNCC | 5 cut(s) | 1180, 1210, 1522, 1564, 2029 |
| PspPPI | RGGWCCY | 1 cut(s) | 1210 |
| PstI | CTGCAG | 1 cut(s) | 449 |
| PstNI | CAGNNNCTG | 2 cut(s) | 538, 1298 |
| PsuI | RGATCY | 4 cut(s) | 38, 1093, 1191, 1295 |
| PvuII | CAGCTG | 1 cut(s) | 1362 |
| RsaI | GTAC | 1 cut(s) | 406 |
| RsaNI | GTAC | 1 cut(s) | 405 |
| RseI | CAYNNNNRTG | 3 cut(s) | 387, 910, 1362 |
| SapI | GCTCTTC | 1 cut(s) | 1380 |
| SaqAI | TTAA | 6 cut(s) | 650, 750, 1010, 1197, 1494, 1646 |
| SatI | GCNGC | 4 cut(s) | 84, 489, 780, 1950 |
| Sau3AI | GATC | 8 cut(s) | 38, 946, 978, 1093, 1135, 1191, 1295, 1771 |
| Sau96I | GGNCC | 5 cut(s) | 1180, 1210, 1522, 1564, 2029 |
| SchI | GAGTC | 3 cut(s) | 93, 1283, 1831 |
| ScrFI | CCNGG | 4 cut(s) | 168, 989, 1189, 2034 |
| SfaNI | GCATC | 3 cut(s) | 247, 1786, 1993 |
| SfcI | CTRYAG | 3 cut(s) | 445, 530, 2122 |
| SinI | GGWCC | 3 cut(s) | 1180, 1210, 1522 |
| SmiI | ATTTAAAT | 1 cut(s) | 651 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 387, 910, 1362 |
| SphI | GCATGC | 1 cut(s) | 909 |
| SsiI | CCGC | 3 cut(s) | 83, 86, 413 |
| SspI | AATATT | 2 cut(s) | 862, 1163 |
| SspMI | CTAG | 7 cut(s) | 278, 330, 402, 707, 788, 1554, 2109 |
| StyD4I | CCNGG | 4 cut(s) | 166, 987, 1187, 2032 |
| StyI | CCWWGG | 1 cut(s) | 759 |
| SwaI | ATTTAAAT | 1 cut(s) | 651 |
| TaaI | ACNGT | 7 cut(s) | 181, 534, 823, 1392, 1440, 1763, 1925 |
| TaiI | ACGT | 8 cut(s) | 66, 457, 777, 1491, 1573, 1640, 1714, 1894 |
| TaqI | TCGA | 5 cut(s) | 33, 213, 426, 503, 1270 |
| TatI | WGTACW | 1 cut(s) | 404 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TfiI | GAWTC | 7 cut(s) | 208, 500, 1075, 1414, 1557, 1594, 1990 |
| Tru1I | TTAA | 6 cut(s) | 650, 750, 1010, 1197, 1494, 1646 |
| Tru9I | TTAA | 6 cut(s) | 650, 750, 1010, 1197, 1494, 1646 |
| TscAI | CASTG | 3 cut(s) | 539, 1395, 1860 |
| TseFI | GTSAC | 2 cut(s) | 770, 888 |
| TseI | GCWGC | 3 cut(s) | 488, 779, 1949 |
| Tsp45I | GTSAC | 2 cut(s) | 770, 888 |
| TspDTI | ATGAA | 9 cut(s) | 242, 627, 669, 1493, 1536, 1704, 1817, 1869, 2092 |
| TspGWI | ACGGA | 1 cut(s) | 20 |
| TspRI | CASTG | 3 cut(s) | 539, 1395, 1860 |
| VpaK11BI | GGWCC | 3 cut(s) | 1180, 1210, 1522 |
| XapI | RAATTY | 7 cut(s) | 480, 646, 710, 721, 746, 1226, 1970 |
| XbaI | TCTAGA | 3 cut(s) | 277, 706, 787 |
| XceI | RCATGY | 4 cut(s) | 909, 1333, 1410, 1920 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1681 |
| XmiI | GTMKAC | 1 cut(s) | 242 |
| XmnI | GAANNNNTTC | 2 cut(s) | 231, 714 |
| XspI | CTAG | 7 cut(s) | 278, 330, 402, 707, 788, 1554, 2109 |