Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Forward (+)

195111 .. 200527

Gene Structure 5417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgcggggttatcgaatgtcaaaagctggtgtttgttgtctccgagctcaacaagaaatttcagaagaagctggtgtgtcagagcctgattcgaggatcccacccccaccaggcaagttcttttctatctcactatgcctattgcgtgaggatgtgtaccatgttgtcaaagctttcgctatgataggagagtgggtgaatgctgaagcaaagctctatactcaagtcttgatgagagactttgaacataatggattgaatcttactttaaccaagagagaggagatgcagcgtgtgagagtccaaattgatgagctaagcttgcgctatatccaaaatctacatgaggatttttctttccttgtcttcactgagactgagttggctggggtaccacaagagtttctcaaggtagcatactttcgtgttctgactcttgctgctgctgacagtgatgatcatcaaagcacaactgtgtgcgatcctactccgatcacaggtgttagccctacttcggcacctttgatcacctatgccaagaaatcaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

183

Amino Acids

20.65

Weight (kDa)

5.61

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	391
AccB1I	GGYRCC	2 cut(s)	391, 517
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	3 cut(s)	91, 104, 476
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	158, 393
AfiI	CCNNNNNNNGG	3 cut(s)	110, 497, 514
AgsI	TTSAA	2 cut(s)	245, 259
AjnI	CCWGG	1 cut(s)	109
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	7 cut(s)	26, 47, 71, 173, 214, 316, 321
AluI	AGCT	7 cut(s)	26, 47, 71, 173, 214, 316, 321
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	3 cut(s)	44, 231, 368
AlwI	GGATC	3 cut(s)	91, 104, 476
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	289, 440, 443
ApoI	RAATTY	1 cut(s)	57
Asp718I	GGTACC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	208, 520
BamHI	GGATCC	1 cut(s)	96
BanI	GGYRCC	2 cut(s)	391, 517
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	301, 427, 430
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	2 cut(s)	457, 525
BcoDI	GTCTC	3 cut(s)	44, 231, 368
BisI	GCNGC	3 cut(s)	290, 441, 444
BlpI	GCTNAGC	1 cut(s)	317
BlsI	GCNGC	3 cut(s)	291, 442, 445
Bme1390I	CCNGG	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	98, 393, 519
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	358
Bpu1102I	GCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	207, 392
BsaBI	GATNNNNATC	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 497, 514
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	3 cut(s)	110, 497, 514
BseMII	CTCAG	2 cut(s)	363, 369
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	301, 427, 430
BseYI	CCCAGC	1 cut(s)	386
BshNI	GGYRCC	2 cut(s)	391, 517
BsiHKAI	GWGCWC	1 cut(s)	49
BslI	CCNNNNNNNGG	3 cut(s)	110, 497, 514
BsmAI	GTCTC	3 cut(s)	44, 231, 368
BsmI	GAATGC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	5 cut(s)	96, 457, 481, 492, 525
Bsp1720I	GCTNAGC	1 cut(s)	317
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	2 cut(s)	364, 370
BspLI	GGNNCC	3 cut(s)	98, 393, 519
BspPI	GGATC	3 cut(s)	91, 104, 476
BspT107I	GGYRCC	2 cut(s)	391, 517
BssMI	GATC	5 cut(s)	96, 457, 481, 492, 525
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	452, 475
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	317, 372, 378
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	5 cut(s)	99, 460, 484, 495, 528
BstMAI	GTCTC	3 cut(s)	44, 231, 368
BstMBI	GATC	5 cut(s)	96, 457, 481, 492, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	301, 427, 430
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	369, 457
Cac8I	GCNNGC	1 cut(s)	323
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	157, 392
CviAII	CATG	2 cut(s)	161, 344
CviQI	GTAC	2 cut(s)	157, 392
DdeI	CTNAG	3 cut(s)	317, 372, 378
DpnI	GATC	5 cut(s)	98, 459, 483, 494, 527
DpnII	GATC	5 cut(s)	96, 457, 481, 492, 525
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	2 cut(s)	164, 347
FaiI	YATR	9 cut(s)	136, 162, 182, 219, 249, 330, 345, 418, 534
FatI	CATG	2 cut(s)	160, 343
FbaI	TGATCA	2 cut(s)	457, 525
Fnu4HI	GCNGC	3 cut(s)	290, 441, 444
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	3 cut(s)	290, 441, 444
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	3 cut(s)	290, 441, 444
GsaI	CCCAGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	164, 347
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	2 cut(s)	171, 319
HinfI	GANTC	4 cut(s)	89, 259, 300, 433
HphI	GGTGA	2 cut(s)	208, 520
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	5 cut(s)	44, 64, 82, 432, 492
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	452, 475
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	3 cut(s)	317, 372, 378
Hsp92II	CATG	2 cut(s)	164, 347
HspAI	GCGC	1 cut(s)	325
KpnI	GGTACC	1 cut(s)	395
Ksp22I	TGATCA	2 cut(s)	457, 525
Kzo9I	GATC	5 cut(s)	96, 457, 481, 492, 525
LpnPI	CCDG	7 cut(s)	12, 57, 96, 99, 123, 372, 483
Lsp1109I	GCAGC	3 cut(s)	301, 427, 430
LweI	GCATC	1 cut(s)	276
MalI	GATC	5 cut(s)	98, 459, 483, 494, 527
MboI	GATC	5 cut(s)	96, 457, 481, 492, 525
MboII	GAAGA	2 cut(s)	77, 358
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	57, 306
MlyI	GAGTC	2 cut(s)	309, 427
MnlI	CCTC	4 cut(s)	87, 142, 274, 340
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	5 cut(s)	96, 457, 481, 492, 525
NlaIII	CATG	2 cut(s)	164, 347
NlaIV	GGNNCC	3 cut(s)	98, 393, 519
OliI	CACNNNNGTG	1 cut(s)	473
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	89, 259
PkrI	GCNGC	3 cut(s)	291, 442, 445
PleI	GAGTC	2 cut(s)	308, 427
PpsI	GAGTC	2 cut(s)	308, 427
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	98, 393, 519
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	158, 393
RsaNI	GTAC	2 cut(s)	157, 392
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	3 cut(s)	290, 441, 444
Sau3AI	GATC	5 cut(s)	96, 457, 481, 492, 525
SchI	GAGTC	2 cut(s)	309, 427
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	222, 407
SmoI	CTYRAG	2 cut(s)	222, 407
Sse9I	AATT	2 cut(s)	57, 306
SsiI	CCGC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	452, 475
TaqI	TCGA	2 cut(s)	13, 92
TasI	AATT	2 cut(s)	57, 306
TfiI	GAWTC	2 cut(s)	89, 259
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	2 cut(s)	376, 457
TseI	GCWGC	3 cut(s)	289, 440, 443
TspRI	CASTG	2 cut(s)	376, 457
XapI	RAATTY	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.