Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Forward (+)

42279924 .. 42284089

Gene Structure 4166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0250700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCATCGACGGATAAGCCAGCTAACCCGGAAACCGGTAAGGAAGTTCCACCACCAAAGGCCTCGTACGGAGACACGCCTCCTCCTCCTCCAAAAGCAGTTGACTTGTTTGCAGTCGATGTGGCACTTAGGTTCTTGGTGTTTGCAGCATCACTAACAAGTGTATTGATCATGGTAACTAGCAAGCAGACAGTATTCCGAGGCCCTATCCCGTTAAAAGCCAAGTTTGATCACTCTCCTGCCTTCATATACTTTGTAGTGGCACTATCAGTTGCAGGCCTCTATGGTATTCTTACTTCACTAGCATCCCTTTCAGTCATCTGGAAGCCAATATTCTCAACCAAGTTCTTGCTCCACTTTGCATTTTGGGATGTGCTGATACTGGGTCTAGTGGCCTCTGCCACGGGTACCGCCGGGGGAGTTGCGTATATTGGATACAAGGGCAATGAACATGTGCAGTGGAACAAGGTTTGCTCTATTTTTGACAAGTACTGCAAACATCTAGCAGGCTCCCTCGCTACGTCGTTGTTTGCTTCGGTTTTGCTGGTCCTTCTGGTGTGGCTGTCAACTTTCTCACTCCACAAGAAAATTCCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

199

Amino Acids

21.47

Weight (kDa)

9.52

Isoelectric Point (pI)

20.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	38 - 181	3.4e-35	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	588
AfaI	GTAC	3 cut(s)	68, 409, 491
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	451
AgeI	ACCGGT	1 cut(s)	35
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	4 cut(s)	60, 202, 277, 393
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	203, 547
AsuC2I	CCSGG	2 cut(s)	29, 415
AvaII	GGWCC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	407
BarI	GAAGNNNNNNTAC	2 cut(s)	280, 312
BbvI	GCAGC	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	428
BclI	TGATCA	2 cut(s)	168, 229
BcnI	CCSGG	2 cut(s)	29, 415
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	4 cut(s)	180, 302, 389, 503
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	29, 415
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	203, 547
BmiI	GGNNCC	2 cut(s)	409, 511
BmrFI	CCNGG	2 cut(s)	29, 415
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	3 cut(s)	14, 158, 314
BmuI	ACTGGG	1 cut(s)	392
BpuMI	CCSGG	2 cut(s)	29, 415
BsaJI	CCNNGG	3 cut(s)	199, 402, 414
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	199, 402, 414
BseGI	GGATG	2 cut(s)	305, 376
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	3 cut(s)	72, 75, 78
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	4 cut(s)	62, 204, 279, 395
BshNI	GGYRCC	1 cut(s)	407
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	29, 36, 414
BsiWI	CGTACG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	62, 204, 279, 395
Bsp143I	GATC	2 cut(s)	168, 229
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	4 cut(s)	62, 204, 279, 395
BspLI	GGNNCC	2 cut(s)	409, 511
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	199, 402, 414
BssMI	GATC	2 cut(s)	168, 229
Bst4CI	ACNGT	1 cut(s)	193
BstC8I	GCNNGC	4 cut(s)	21, 185, 277, 508
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	305, 376
BstKTI	GATC	2 cut(s)	171, 232
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	168, 229
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	27, 413
BstV1I	GCAGC	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	4 cut(s)	62, 204, 279, 395
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	305, 376
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	4 cut(s)	21, 185, 277, 508
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	203, 547
Csp6I	GTAC	3 cut(s)	67, 408, 490
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	2 cut(s)	172, 452
CviQI	GTAC	3 cut(s)	67, 408, 490
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	170, 231
DpnII	GATC	2 cut(s)	168, 229
Eco147I	AGGCCT	2 cut(s)	62, 279
Eco47I	GGWCC	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	203
FaeI	CATG	2 cut(s)	175, 455
FaiI	YATR	6 cut(s)	173, 248, 250, 285, 429, 453
FatI	CATG	2 cut(s)	171, 451
FbaI	TGATCA	2 cut(s)	168, 229
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	292, 383
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	4 cut(s)	180, 302, 389, 503
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	4 cut(s)	62, 204, 279, 395
HapII	CCGG	3 cut(s)	29, 36, 414
Hin1II	CATG	2 cut(s)	175, 455
HincII	GTYRAC	2 cut(s)	103, 567
HindII	GTYRAC	2 cut(s)	103, 567
HpaII	CCGG	3 cut(s)	29, 36, 414
Hpy166II	GTNNAC	2 cut(s)	103, 567
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	103, 567
Hpy99I	CGWCG	2 cut(s)	13, 526
HpyAV	CCTTC	2 cut(s)	253, 560
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	6 cut(s)	113, 146, 275, 362, 457, 495
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	2 cut(s)	175, 455
KpnI	GGTACC	1 cut(s)	411
Ksp22I	TGATCA	2 cut(s)	168, 229
Kzo9I	GATC	2 cut(s)	168, 229
LmnI	GCTCC	2 cut(s)	357, 515
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	3 cut(s)	14, 158, 314
MaeI	CTAG	4 cut(s)	180, 302, 389, 503
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	170, 231
MboI	GATC	2 cut(s)	168, 229
MluCI	AATT	1 cut(s)	588
MnlI	CCTC	9 cut(s)	73, 90, 93, 96, 99, 194, 290, 406, 524
MseI	TTAA	1 cut(s)	215
MspI	CCGG	3 cut(s)	29, 36, 414
MspR9I	CCNGG	2 cut(s)	29, 415
NciI	CCSGG	2 cut(s)	29, 415
NdeII	GATC	2 cut(s)	168, 229
NlaIII	CATG	2 cut(s)	175, 455
NlaIV	GGNNCC	2 cut(s)	409, 511
NspI	RCATGY	1 cut(s)	455
PceI	AGGCCT	2 cut(s)	62, 279
PciI	ACATGT	1 cut(s)	451
Pfl23II	CGTACG	1 cut(s)	66
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	451
PspLI	CGTACG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	409, 511
PspPI	GGNCC	2 cut(s)	203, 547
RsaI	GTAC	3 cut(s)	68, 409, 491
RsaNI	GTAC	3 cut(s)	67, 408, 490
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	168, 229
Sau96I	GGNCC	2 cut(s)	203, 547
ScaI	AGTACT	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	29, 415
SetI	ASST	4 cut(s)	25, 134, 471, 524
SfaNI	GCATC	3 cut(s)	14, 158, 314
SinI	GGWCC	1 cut(s)	547
Sse9I	AATT	1 cut(s)	588
SseBI	AGGCCT	2 cut(s)	62, 279
SsiI	CCGC	1 cut(s)	411
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	4 cut(s)	180, 302, 389, 503
StuI	AGGCCT	2 cut(s)	62, 279
StyD4I	CCNGG	2 cut(s)	27, 413
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	2 cut(s)	8, 117
TasI	AATT	1 cut(s)	588
TatI	WGTACW	1 cut(s)	489
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	464
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	235, 462
TspGWI	ACGGA	2 cut(s)	26, 84
TspRI	CASTG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	588
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	4 cut(s)	180, 302, 389, 503
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.