Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

38632057 .. 38635523

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018869

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTCTTATCTCTCTCTCCGCTGGTTCCTCGAGTTACGAGATACTATGCCCGCCTCACTGCTTTAAGGTCCTTCTCCTTCTGCAGGATCCCACCCCCACCAGGCAAGTTCTTTTCTATCTCACTATGCCTATTGCGTGAAGATGTGTACCATGTTGTCAAAGCTTTCGCTATGATAGGAGAGTGGGTGAATGCTGAAGCAAAGCTCTATACTCAAGTCTTGATGAGAGACTTTGAACATAATGGATTGAATCTTACTTTAACCAAGAGAGATGAGATGCAGCGTGTGAGAGTCCAAATTGATGAGCTAAGCTTGCGCTATATCCAAAATCTACATGAGGATTTTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGAGTTTCTCAAAATCAAGAAAACAGAGATCTATCAGGGTAAAAATGGTCATACAAGGTCTATAAAGTTTAGAGCAACTTTTGGGACCAAGAGAGTAGAACAGCAGAACTTGTGGTTGCAGTTATGGAGACAAACAAGATGCAGTTTTTTCGGTGGCTTTTTTGGTGCTGGGGTGAGATGGCTGGACCTGGACGCATGGCAGCTCTCAAGGAATGAGGTTTTTCCTTTTGATATAATTTGGGTGATTTCTTGTAGGTGGAGAATCAGGAAGGAGTCGCAAACTTTGATGATATCCTTGCAAATTCAGATGCATTCATGGTGGCACCAGATGTTGGAACTAGCAATTGTTGAATATGTCGATGAATTGTACAAGTTCTACAAACTTGAAGAGGATGACTTGGACATTGATCAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

269

Amino Acids

32.03

Weight (kDa)

8.29

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	382
AccB1I	GGYRCC	2 cut(s)	382, 711
AccB7I	CCANNNNNTGG	1 cut(s)	721
AciI	CCGC	2 cut(s)	20, 52
AclWI	GGATC	2 cut(s)	82, 95
AcsI	RAATTY	1 cut(s)	690
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	3 cut(s)	149, 384, 758
AfiI	CCNNNNNNNGG	3 cut(s)	84, 101, 721
AgsI	TTSAA	4 cut(s)	236, 250, 740, 776
AjnI	CCWGG	2 cut(s)	100, 576
AluBI	AGCT	5 cut(s)	164, 205, 307, 312, 592
AluI	AGCT	5 cut(s)	164, 205, 307, 312, 592
Alw26I	GTCTC	3 cut(s)	222, 359, 511
AlwI	GGATC	2 cut(s)	82, 95
Ama87I	CYCGRG	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	280, 589
ApoI	RAATTY	1 cut(s)	690
Asp718I	GGTACC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	3 cut(s)	69, 474, 574
AsuHPI	GGTGA	3 cut(s)	199, 574, 643
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	3 cut(s)	69, 474, 574
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	2 cut(s)	382, 711
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	292, 601
BccI	CCATC	1 cut(s)	561
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	2 cut(s)	102, 578
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	3 cut(s)	222, 359, 511
BfaI	CTAG	2 cut(s)	728, 805
BfmI	CTRYAG	1 cut(s)	82
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	2 cut(s)	281, 590
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	2 cut(s)	282, 591
Bme1390I	CCNGG	2 cut(s)	102, 578
Bme18I	GGWCC	3 cut(s)	69, 474, 574
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	3 cut(s)	69, 474, 574
BmiI	GGNNCC	5 cut(s)	27, 89, 384, 475, 713
BmrFI	CCNGG	2 cut(s)	102, 578
BmsI	GCATC	3 cut(s)	267, 518, 687
BpiI	GAAGAC	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	198, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 101, 721
BseBI	CCWGG	2 cut(s)	102, 578
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	3 cut(s)	84, 101, 721
BseMII	CTCAG	2 cut(s)	354, 360
BseXI	GCAGC	2 cut(s)	292, 601
BseYI	CCCAGC	2 cut(s)	377, 557
BshNI	GGYRCC	2 cut(s)	382, 711
BsiHKCI	CYCGRG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	3 cut(s)	84, 101, 721
BsmAI	GTCTC	3 cut(s)	222, 359, 511
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	2 cut(s)	196, 700
BsoBI	CYCGRG	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	3 cut(s)	87, 417, 796
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	2 cut(s)	20, 52
BspCNI	CTCAG	2 cut(s)	355, 361
BspLI	GGNNCC	5 cut(s)	27, 89, 384, 475, 713
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	2 cut(s)	82, 95
BspT107I	GGYRCC	2 cut(s)	382, 711
BsrGI	TGTACA	1 cut(s)	756
BssMI	GATC	3 cut(s)	87, 417, 796
Bst2UI	CCWGG	2 cut(s)	102, 578
Bst6I	CTCTTC	1 cut(s)	771
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	52, 314
BstDEI	CTNAG	3 cut(s)	308, 363, 369
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	787
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	90, 420, 799
BstMAI	GTCTC	3 cut(s)	222, 359, 511
BstMBI	GATC	3 cut(s)	87, 417, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	2 cut(s)	102, 578
BstSCI	CCNGG	2 cut(s)	100, 576
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	292, 601
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	2 cut(s)	87, 417
BstYI	RGATCY	2 cut(s)	87, 417
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 360
Cac8I	GCNNGC	2 cut(s)	52, 314
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	3 cut(s)	69, 474, 574
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	3 cut(s)	148, 383, 757
CviAII	CATG	4 cut(s)	152, 335, 585, 705
CviJI	RGCY	8 cut(s)	164, 205, 307, 312, 377, 546, 571, 592
CviKI_1	RGCY	8 cut(s)	164, 205, 307, 312, 377, 546, 571, 592
CviQI	GTAC	3 cut(s)	148, 383, 757
DdeI	CTNAG	3 cut(s)	308, 363, 369
DpnI	GATC	3 cut(s)	89, 419, 798
DpnII	GATC	3 cut(s)	87, 417, 796
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	3 cut(s)	69, 474, 574
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	100, 576
EcoRV	GATATC	1 cut(s)	681
EcoT22I	ATGCAT	1 cut(s)	702
FaeI	CATG	4 cut(s)	155, 338, 588, 708
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	4 cut(s)	151, 334, 584, 704
FauI	CCCGC	1 cut(s)	59
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	2 cut(s)	281, 590
FokI	GGATG	1 cut(s)	794
Fsp4HI	GCNGC	2 cut(s)	281, 590
FspBI	CTAG	2 cut(s)	728, 805
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	281, 590
GsaI	CCCAGC	2 cut(s)	381, 561
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	155, 338, 588, 708
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	162, 310
HinfI	GANTC	4 cut(s)	250, 291, 651, 662
HphI	GGTGA	3 cut(s)	199, 574, 643
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	3 cut(s)	220, 406, 655
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	82, 88, 652
HpyCH4V	TGCA	6 cut(s)	84, 280, 508, 531, 688, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	308, 363, 369
Hsp92II	CATG	4 cut(s)	155, 338, 588, 708
HspAI	GCGC	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	87, 417, 796
Lsp1109I	GCAGC	2 cut(s)	292, 601
LweI	GCATC	3 cut(s)	267, 518, 687
MaeI	CTAG	2 cut(s)	728, 805
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	89, 419, 798
MboI	GATC	3 cut(s)	87, 417, 796
MboII	GAAGA	3 cut(s)	152, 349, 788
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	2 cut(s)	87, 417
MluCI	AATT	5 cut(s)	297, 624, 690, 732, 752
MlyI	GAGTC	2 cut(s)	300, 671
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	5 cut(s)	39, 65, 331, 598, 772
Mph1103I	ATGCAT	1 cut(s)	702
MseI	TTAA	2 cut(s)	65, 260
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	102, 578
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	2 cut(s)	196, 700
MvaI	CCWGG	2 cut(s)	102, 578
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	3 cut(s)	87, 417, 796
NlaIII	CATG	4 cut(s)	155, 338, 588, 708
NlaIV	GGNNCC	5 cut(s)	27, 89, 384, 475, 713
NsiI	ATGCAT	1 cut(s)	702
PaeR7I	CTCGAG	1 cut(s)	30
PctI	GAATGC	2 cut(s)	196, 700
PfeI	GAWTC	2 cut(s)	250, 651
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	2 cut(s)	282, 591
PleI	GAGTC	2 cut(s)	299, 670
PpsI	GAGTC	2 cut(s)	299, 670
PpuMI	RGGWCCY	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	100, 576
PspFI	CCCAGC	2 cut(s)	377, 557
PspGI	CCWGG	2 cut(s)	100, 576
PspN4I	GGNNCC	5 cut(s)	27, 89, 384, 475, 713
PspPI	GGNCC	3 cut(s)	69, 474, 574
PspPPI	RGGWCCY	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	87, 417
RsaI	GTAC	3 cut(s)	149, 384, 758
RsaNI	GTAC	3 cut(s)	148, 383, 757
SaqAI	TTAA	2 cut(s)	65, 260
SatI	GCNGC	2 cut(s)	281, 590
Sau3AI	GATC	3 cut(s)	87, 417, 796
Sau96I	GGNCC	3 cut(s)	69, 474, 574
SchI	GAGTC	2 cut(s)	300, 671
ScrFI	CCNGG	2 cut(s)	102, 578
SfaNI	GCATC	3 cut(s)	267, 518, 687
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	30
SinI	GGWCC	3 cut(s)	69, 474, 574
SlaI	CTCGAG	1 cut(s)	30
SmlI	CTYRAG	3 cut(s)	30, 213, 595
SmoI	CTYRAG	3 cut(s)	30, 213, 595
Sse9I	AATT	5 cut(s)	297, 624, 690, 732, 752
SsiI	CCGC	2 cut(s)	20, 52
SspMI	CTAG	2 cut(s)	728, 805
StyD4I	CCNGG	2 cut(s)	100, 576
TaqI	TCGA	2 cut(s)	31, 747
TasI	AATT	5 cut(s)	297, 624, 690, 732, 752
TatI	WGTACW	1 cut(s)	756
TfiI	GAWTC	2 cut(s)	250, 651
Tru1I	TTAA	2 cut(s)	65, 260
Tru9I	TTAA	2 cut(s)	65, 260
TscAI	CASTG	2 cut(s)	64, 367
TseI	GCWGC	2 cut(s)	280, 589
TspDTI	ATGAA	2 cut(s)	693, 765
TspRI	CASTG	2 cut(s)	64, 367
Van91I	CCANNNNNTGG	1 cut(s)	721
VpaK11BI	GGWCC	3 cut(s)	69, 474, 574
XagI	CCTNNNNNAGG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	690
XhoI	CTCGAG	1 cut(s)	30
XspI	CTAG	2 cut(s)	728, 805
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.