Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

53244055 .. 53249624

Gene Structure 5570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACGGAAAGTCAAGGCGGCAACGCCGTCAAAATGCCGAAGCGGAACCATCGCCTAATAGCCGTCACCGGAGCCGCCGCTCTCATCGCTCTCGCCGTCAACCTCGGAATCACGGCCTTCAACTCTCACAGGAACAACAGAAAGAAGAAAGCTGAATTGGAAGCGCAGCAATTTCCACTTGTACAGTCTTGTTTGTTTCCAAAGATGGTGTCTACTAGTGATGATGTTCGAAAAGCAAGGGCCAAGGCCGAGTGGAGAATTGATGCACATGTTCTCACCTGCAGCATGCGTGAGGATGTGTACCGTGTTGTCAAAGCTTTTGCTACGAGAGGAGAGTGGGTGAATGCTGAAGCAAAGCACTATACTCAAGCCCTGGTAAGGAGTGAGAACATTTTTGTGTTTTCGGTGTGTAGAAGAGTAAATGCTGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

10.03

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	4 cut(s)	18, 43, 75, 78
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	183, 302
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	121
AhdI	GACNNNNNGTC	1 cut(s)	9
AhlI	ACTAGT	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	152, 317
AluI	AGCT	2 cut(s)	152, 317
AoxI	GGCC	3 cut(s)	114, 240, 246
ApeKI	GCWGC	2 cut(s)	166, 282
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	58, 268, 352
AsuII	TTCGAA	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	178, 294
BccI	CCATC	2 cut(s)	57, 199
BceAI	ACGGC	4 cut(s)	11, 47, 80, 129
BciT130I	CCWGG	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	5 cut(s)	19, 75, 78, 167, 283
BlsI	GCNGC	5 cut(s)	20, 76, 79, 168, 284
Bme1390I	CCNGG	1 cut(s)	374
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	2 cut(s)	47, 73
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	103, 243, 372
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	3 cut(s)	103, 243, 372
BseGI	GGATG	2 cut(s)	301, 434
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	178, 294
BshFI	GGCC	3 cut(s)	116, 242, 248
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	116, 242, 248
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	181
BspACI	CCGC	4 cut(s)	18, 43, 75, 78
BspANI	GGCC	3 cut(s)	116, 242, 248
BspLI	GGNNCC	2 cut(s)	47, 73
BspMAI	CTGCAG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	103, 243, 372
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	186, 305
Bst6I	CTCTTC	1 cut(s)	409
BstAUI	TGTACA	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	301, 434
BstHHI	GCGC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	272, 289
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	178, 294
BsuRI	GGCC	3 cut(s)	116, 242, 248
BtgZI	GCGATG	2 cut(s)	35, 70
BtsCI	GGATG	2 cut(s)	301, 434
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	182, 301
CviAII	CATG	2 cut(s)	269, 286
CviJI	RGCY	8 cut(s)	62, 74, 116, 152, 242, 248, 317, 371
CviKI_1	RGCY	8 cut(s)	62, 74, 116, 152, 242, 248, 317, 371
CviQI	GTAC	2 cut(s)	182, 301
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	409
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	272, 289
FaiI	YATR	3 cut(s)	270, 287, 363
FatI	CATG	2 cut(s)	268, 285
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	5 cut(s)	19, 75, 78, 167, 283
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	5 cut(s)	19, 75, 78, 167, 283
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	5 cut(s)	19, 75, 78, 167, 283
HaeIII	GGCC	3 cut(s)	116, 242, 248
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	272, 289
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	3 cut(s)	58, 268, 352
Hpy166II	GTNNAC	3 cut(s)	100, 213, 301
Hpy188I	TCNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	100, 213, 301
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	186, 305
HpyCH4V	TGCA	2 cut(s)	266, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	272, 289
HspAI	GCGC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	82, 115, 292, 359, 386, 411
Lsp1109I	GCAGC	2 cut(s)	178, 294
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	64
MbiI	CCGCTC	1 cut(s)	80
MboII	GAAGA	2 cut(s)	157, 426
MluCI	AATT	3 cut(s)	155, 170, 258
MnlI	CCTC	3 cut(s)	113, 286, 323
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	272, 289
NlaIV	GGNNCC	2 cut(s)	47, 73
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	2 cut(s)	272, 289
NspV	TTCGAA	1 cut(s)	229
PaeI	GCATGC	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	287
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	5 cut(s)	20, 76, 79, 168, 284
PscI	ACATGT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	47, 73
PspPI	GGNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	183, 302
RsaNI	GTAC	2 cut(s)	182, 301
RseI	CAYNNNNRTG	1 cut(s)	395
SatI	GCNGC	5 cut(s)	19, 75, 78, 167, 283
Sau96I	GGNCC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	4 cut(s)	105, 154, 281, 319
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
SpeI	ACTAGT	1 cut(s)	215
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	3 cut(s)	155, 170, 258
SsiI	CCGC	4 cut(s)	18, 43, 75, 78
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	186, 305
TaqI	TCGA	1 cut(s)	229
TasI	AATT	3 cut(s)	155, 170, 258
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	3 cut(s)	21, 77, 80
TfiI	GAWTC	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	166, 282
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	20
XceI	RCATGY	2 cut(s)	272, 289
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.