Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

54272294 .. 54277845

Gene Structure 5552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGTTCGTGACTAAGTGGCAGAATCCTCCATCTGAGAGGCTGAAGATCAATATTGATGGGGATTTCAAGGAGGAGAATGGATGTGGGGGAATTGGTGTAGTGGTCAAAGATGATATTGATCTTCAGGGCTCGAAGGTTCGAGTCGCTCTATCGGCGTCGGAGATCTTGAAATTGGCCGACCGAGTCATTTCCAAGTCAAAAGAGGTCCATGACGCTGTGGCTTCAGTTCCGCTAGATAAGGAAGTGGAGTTTCACTATTGTAGTGCAAGCGCCGAGGCCGAGCGGAGAATTGATGCACATGTTCTGACTTGCAGCATGCCTGAGGATTTGTACCGTGTTGTCAAAGCTTGTGCCACGAGAGAAGAGTGGGTGAATGCTGAAGCGAAGCACTATATTCAAGCCTTGATCTTAGACAAAGCTAAAAATGGTAAATTGAAGGTGACCCTGAAAAGTCATCATGTGGTGGCAGTACTAGAAATTTGCGAGGTCCATCTGCGCCATAAGTTTGCTCGGTTACTTGGCTATTCAAACTATGCTGACTATGCTGTTGATCTTAGAATGGCAAAGAGGCCCACAAAGGACGGGTTGGTCGACTGGGGATATCTTAAGCCATTCTTCAGGATTGACGTGCATTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

214

Amino Acids

24.27

Weight (kDa)

7.11

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	2 cut(s)	233, 286
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	5 cut(s)	65, 110, 210, 402, 604
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	335, 474
AflII	CTTAAG	1 cut(s)	608
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	5 cut(s)	70, 172, 401, 439, 531
AjiI	CACGTC	1 cut(s)	631
AluBI	AGCT	2 cut(s)	350, 422
AluI	AGCT	2 cut(s)	350, 422
AoxI	GGCC	3 cut(s)	177, 279, 572
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	2 cut(s)	275, 501
AspS9I	GGNCC	3 cut(s)	208, 490, 573
AsuHPI	GGTGA	2 cut(s)	385, 454
AvaII	GGWCC	2 cut(s)	208, 490
AxyI	CCTNAGG	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	3 cut(s)	40, 53, 501
BfaI	CTAG	2 cut(s)	236, 476
BfoI	RGCGCY	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	608
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
BmcAI	AGTACT	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	208, 490
BmgBI	CACGTC	1 cut(s)	631
BmgT120I	GGNCC	3 cut(s)	208, 490, 573
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	602
Bse21I	CCTNAGG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	27, 315
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	179, 281, 574
BsiEI	CGRYCG	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	179, 281, 574
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	5 cut(s)	48, 121, 165, 408, 553
BspACI	CCGC	2 cut(s)	233, 286
BspANI	GGCC	3 cut(s)	179, 281, 574
BspCNI	CTCAG	2 cut(s)	28, 316
BspTI	CTTAAG	1 cut(s)	608
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	5 cut(s)	48, 121, 165, 408, 553
BssNI	GRCGYC	1 cut(s)	158
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	271, 320
BstDEI	CTNAG	5 cut(s)	15, 36, 324, 412, 557
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	275, 501
BstKTI	GATC	5 cut(s)	51, 124, 168, 411, 556
BstMBI	GATC	5 cut(s)	48, 121, 165, 408, 553
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 545
BstNSI	RCATGY	2 cut(s)	305, 322
BstPI	GGTNACC	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	179, 281, 574
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	271, 320
CfoI	GCGC	2 cut(s)	275, 501
Cfr13I	GGNCC	3 cut(s)	208, 490, 573
CseI	GACGC	2 cut(s)	147, 224
Csp6I	GTAC	2 cut(s)	334, 473
CviAII	CATG	4 cut(s)	212, 302, 319, 461
CviQI	GTAC	2 cut(s)	334, 473
DdeI	CTNAG	5 cut(s)	15, 36, 324, 412, 557
DpnI	GATC	5 cut(s)	50, 123, 167, 410, 555
DpnII	GATC	5 cut(s)	48, 121, 165, 408, 553
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	208, 490
Eco57I	CTGAAG	5 cut(s)	65, 110, 210, 402, 604
Eco81I	CCTNAGG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	4 cut(s)	215, 305, 322, 464
FaiI	YATR	8 cut(s)	213, 303, 320, 396, 462, 504, 537, 546
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FatI	CATG	4 cut(s)	211, 301, 318, 460
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	316
FspBI	CTAG	2 cut(s)	236, 476
GlaI	GCGC	2 cut(s)	274, 500
GluI	GCNGC	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	179, 281, 574
HgaI	GACGC	2 cut(s)	147, 224
HhaI	GCGC	2 cut(s)	275, 501
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	4 cut(s)	215, 305, 322, 464
Hin6I	GCGC	2 cut(s)	273, 499
HinP1I	GCGC	2 cut(s)	273, 499
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	3 cut(s)	25, 144, 186
HphI	GGTGA	2 cut(s)	385, 454
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	3 cut(s)	37, 163, 309
Hpy188III	TCNNGA	3 cut(s)	10, 169, 622
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	130, 433
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	4 cut(s)	269, 299, 315, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 545
HpyF3I	CTNAG	5 cut(s)	15, 36, 324, 412, 557
HpySE526I	ACGT	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	215, 305, 322, 464
HspAI	GCGC	2 cut(s)	273, 499
Kzo9I	GATC	5 cut(s)	48, 121, 165, 408, 553
LpnPI	CCDG	5 cut(s)	113, 336, 461, 583, 607
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	236, 476
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	3 cut(s)	10, 442, 516
MalI	GATC	5 cut(s)	50, 123, 167, 410, 555
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	5 cut(s)	48, 121, 165, 408, 553
MboII	GAAGA	4 cut(s)	58, 116, 377, 610
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	5 cut(s)	93, 173, 291, 434, 480
MlyI	GAGTC	2 cut(s)	153, 195
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	33, 39, 67, 199, 271, 319, 481, 564
MseI	TTAA	1 cut(s)	609
MspCI	CTTAAG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	155, 545
NdeII	GATC	5 cut(s)	48, 121, 165, 408, 553
NlaIII	CATG	4 cut(s)	215, 305, 322, 464
NmeAIII	GCCGAG	2 cut(s)	301, 307
NmuCI	GTSAC	2 cut(s)	10, 442
NspI	RCATGY	2 cut(s)	305, 322
PaeI	GCATGC	1 cut(s)	322
PciI	ACATGT	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	317
PleI	GAGTC	2 cut(s)	152, 194
PpsI	GAGTC	2 cut(s)	152, 194
PscI	ACATGT	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	442
PspPI	GGNCC	3 cut(s)	208, 490, 573
PsuI	RGATCY	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	335, 474
RsaNI	GTAC	2 cut(s)	334, 473
SalI	GTCGAC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	5 cut(s)	48, 121, 165, 408, 553
Sau96I	GGNCC	3 cut(s)	208, 490, 573
ScaI	AGTACT	1 cut(s)	474
SchI	GAGTC	2 cut(s)	153, 195
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	7 cut(s)	141, 210, 352, 424, 444, 492, 633
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	2 cut(s)	208, 490
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	5 cut(s)	93, 173, 291, 434, 480
SsiI	CCGC	2 cut(s)	233, 286
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	2 cut(s)	236, 476
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	3 cut(s)	134, 142, 594
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	5 cut(s)	93, 173, 291, 434, 480
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TseFI	GTSAC	2 cut(s)	10, 442
TseI	GCWGC	1 cut(s)	315
Tsp45I	GTSAC	2 cut(s)	10, 442
Tth111I	GACNNNGTC	1 cut(s)	185
Vha464I	CTTAAG	1 cut(s)	608
VpaK11BI	GGWCC	2 cut(s)	208, 490
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	2 cut(s)	305, 322
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	2 cut(s)	236, 476
ZrmI	AGTACT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.