Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

1056753 .. 1058122

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCAAAAGCTGGTGTTTGTTGTCTCCGAGCTCAACAAGAAATTTCAGATGAAGCTGGTGTGTCAGAGCCCGATTCGAGGATCCCACCCCCACCAGGCAAGTTCTTTTCTATCTCACTATGCCTATTGCGTGAGGATGTGTACCATGTTGTCAAAGCTTTCGCTATGATAGGAGAGTGGGTGAATGCTGAAGCAAAGCTCTATACTCAAGTCTTGATGAGAGACTTTGAACATAATGGATTGAATCTTACTTTAACCAAGAGAGAGGAGATGCAGCGTGTGAGAGTCCAAGTTGATGAGCTAAGCTTGCGCTATATCCAAAATCTACGTGAGGATTTTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGAGTTTCTCAAGGAACAAATGATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

137

Amino Acids

15.8

Weight (kDa)

4.97

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	376
AclWI	GGATC	2 cut(s)	76, 89
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	143, 378
AfiI	CCNNNNNNNGG	2 cut(s)	78, 95
AgsI	TTSAA	2 cut(s)	230, 244
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	7 cut(s)	11, 32, 56, 158, 199, 301, 306
AluI	AGCT	7 cut(s)	11, 32, 56, 158, 199, 301, 306
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	3 cut(s)	29, 216, 353
AlwI	GGATC	2 cut(s)	76, 89
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	2 cut(s)	34, 72
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	29, 216, 353
BisI	GCNGC	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	83, 378
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	2 cut(s)	261, 396
BpiI	GAAGAC	1 cut(s)	343
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	192, 377
BsaAI	YACGTR	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 95
BseBI	CCWGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	78, 95
BseMII	CTCAG	2 cut(s)	348, 354
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	78, 95
BsmAI	GTCTC	3 cut(s)	29, 216, 353
BsmI	GAATGC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	34, 72
Bsp143I	GATC	1 cut(s)	81
Bsp1720I	GCTNAGC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	349, 355
BspLI	GGNNCC	2 cut(s)	83, 378
BspPI	GGATC	2 cut(s)	76, 89
BspT107I	GGYRCC	1 cut(s)	376
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	302, 357, 363
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	3 cut(s)	29, 216, 353
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	308
CfoI	GCGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	142, 377
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	9 cut(s)	11, 32, 56, 70, 158, 199, 301, 306, 371
CviKI_1	RGCY	9 cut(s)	11, 32, 56, 70, 158, 199, 301, 306, 371
CviQI	GTAC	2 cut(s)	142, 377
DdeI	CTNAG	3 cut(s)	302, 357, 363
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	34, 72
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	34, 72
FaeI	CATG	1 cut(s)	149
FaiI	YATR	6 cut(s)	121, 147, 167, 204, 234, 315
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	2 cut(s)	34, 72
Fsp4HI	GCNGC	1 cut(s)	275
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	156, 304
HinfI	GANTC	3 cut(s)	74, 244, 285
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	29, 49, 67
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	274, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	3 cut(s)	302, 357, 363
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	310
KpnI	GGTACC	1 cut(s)	380
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	4 cut(s)	42, 81, 108, 357
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	2 cut(s)	261, 396
MaeII	ACGT	1 cut(s)	328
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	34, 72
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	72, 127, 259, 325
MseI	TTAA	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	2 cut(s)	83, 378
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	74, 244
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Ppu21I	YACGTR	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	83, 378
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	143, 378
RsaNI	GTAC	2 cut(s)	142, 377
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	34, 72
SetI	ASST	8 cut(s)	13, 34, 58, 160, 201, 303, 308, 331
SfaNI	GCATC	2 cut(s)	261, 396
SmlI	CTYRAG	2 cut(s)	207, 392
SmoI	CTYRAG	2 cut(s)	207, 392
Sse9I	AATT	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	74, 244
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.